Wall clock time and date at job start Wed Apr 1 2020 05:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35856 * 126.13570 * 2 1 4 4 N 1.30161 * 109.00265 * 179.97438 * 3 2 1 5 5 C 1.35754 * 108.87189 * 0.02562 * 4 3 2 6 6 C 1.47330 * 126.24146 * 180.02562 * 5 4 3 7 7 O 1.21619 * 120.00439 * 173.23357 * 6 5 4 8 8 N 1.34773 * 119.99399 * 353.23216 * 6 5 4 9 9 C 1.48434 * 120.81015 * 173.02536 * 8 6 5 10 10 C 1.53895 * 107.38865 * 132.40935 * 9 8 6 11 11 H 1.08994 * 112.12377 * 182.62351 * 10 9 8 12 12 C 1.54551 * 108.35303 * 307.01089 * 10 9 8 13 13 C 1.54255 * 104.93855 * 89.19187 * 12 10 9 14 14 C 1.54545 * 104.94051 * 0.02562 * 13 12 10 15 15 H 1.08998 * 112.20358 * 146.47248 * 14 13 12 16 16 C 1.47151 * 120.68742 * 353.40918 * 8 6 5 17 17 N 1.48722 * 104.32327 * 24.74233 * 14 13 12 18 18 C 1.46902 * 110.99913 * 78.35686 * 17 14 13 19 19 C 1.50702 * 109.47019 * 75.21136 * 18 17 14 20 20 O 1.21290 * 119.99846 * 359.97438 * 19 18 17 21 21 N 1.34772 * 120.00344 * 180.02562 * 19 18 17 22 22 C 1.37099 * 120.00199 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99963 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00050 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00302 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00092 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46961 * 90.00233 * 26 24 22 28 28 H 1.48491 * 109.47470 * 210.00024 * 26 24 22 29 29 H 1.48504 * 109.47173 * 330.00558 * 26 24 22 30 30 C 1.35380 * 126.13962 * 180.27248 * 2 1 3 31 31 H 1.09001 * 109.47489 * 90.02572 * 1 2 3 32 32 H 1.09000 * 109.47362 * 210.02486 * 1 2 3 33 33 H 1.09000 * 109.47409 * 330.02256 * 1 2 3 34 34 H 1.07996 * 125.49277 * 359.93083 * 3 2 1 35 35 H 1.09006 * 109.56045 * 13.26741 * 9 8 6 36 36 H 1.08994 * 110.58536 * 252.13300 * 9 8 6 37 37 H 1.09000 * 110.34340 * 208.06059 * 12 10 9 38 38 H 1.08998 * 110.34305 * 330.32199 * 12 10 9 39 39 H 1.09002 * 110.34323 * 241.13378 * 13 12 10 40 40 H 1.09001 * 110.43565 * 118.91688 * 13 12 10 41 41 H 1.09002 * 109.74745 * 107.72509 * 16 8 6 42 42 H 1.09004 * 109.74953 * 347.00498 * 16 8 6 43 43 H 1.09001 * 109.47131 * 195.20687 * 18 17 14 44 44 H 1.08994 * 109.47303 * 315.21116 * 18 17 14 45 45 H 0.97006 * 119.99960 * 359.97438 * 21 19 18 46 46 H 0.96995 * 120.00288 * 180.02562 * 25 24 22 47 47 H 1.08003 * 126.55840 * 0.05350 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5099 0.7138 0.0006 5 6 3.5511 -0.6432 0.0003 6 6 4.7653 -1.4777 0.0013 7 8 4.6739 -2.6841 0.1251 8 7 5.9772 -0.9041 -0.1350 9 6 7.2183 -1.7040 0.0167 10 6 8.1321 -1.3655 -1.1744 11 1 9.0529 -1.9486 -1.1640 12 6 7.3272 -1.5679 -2.4781 13 6 6.6529 -0.2063 -2.7445 14 6 7.1100 0.6995 -1.5788 15 1 7.2273 1.7387 -1.8862 16 6 6.0993 0.5325 -0.4295 17 7 8.3930 0.0983 -1.1269 18 6 9.4933 0.4669 -2.0276 19 6 9.8912 1.8983 -1.7749 20 8 9.3146 2.5476 -0.9281 21 7 10.8871 2.4573 -2.4905 22 6 11.2488 3.7596 -2.2609 23 1 10.7359 4.3375 -1.5063 24 6 12.2759 4.3358 -2.9984 25 7 12.6223 5.5843 -2.7787 26 14 13.1644 3.3357 -4.3021 27 1 12.4726 3.4967 -5.6063 28 1 14.5654 3.8129 -4.4228 29 1 13.1614 1.9023 -3.9138 30 6 2.2634 -1.0933 -0.0052 31 1 -0.3634 -0.0005 -1.0277 32 1 -0.3634 -0.8897 0.5142 33 1 -0.3634 0.8902 0.5135 34 1 1.9257 2.1221 -0.0011 35 1 6.9723 -2.7658 0.0020 36 1 7.7229 -1.4552 0.9503 37 1 7.9952 -1.8272 -3.2995 38 1 6.5739 -2.3437 -2.3418 39 1 5.5681 -0.3132 -2.7392 40 1 6.9878 0.2044 -3.6970 41 1 6.4565 1.0606 0.4545 42 1 5.1301 0.9304 -0.7305 43 1 10.3471 -0.1853 -1.8442 44 1 9.1681 0.3575 -3.0622 45 1 11.3480 1.9382 -3.1681 46 1 13.3390 5.9866 -3.2937 47 1 1.9422 -2.1244 -0.0109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317732984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:28 Heat of formation + Delta-G solvation = 39.663554 kcal Electronic energy + Delta-G solvation = -31279.653134 eV Core-core repulsion = 27078.985951 eV Total energy + Delta-G solvation = -4200.667183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.49525 -40.75391 -38.69065 -37.76824 -34.82294 -34.16868 -33.78711 -31.63228 -31.42811 -31.01954 -30.06852 -28.18629 -27.45127 -25.74835 -24.58717 -23.75696 -22.75276 -21.55762 -20.48260 -20.17568 -19.29310 -18.79058 -18.22406 -17.43086 -16.65449 -16.36199 -15.98598 -15.84545 -15.46281 -14.92533 -14.82417 -14.62399 -14.40188 -14.09505 -13.99722 -13.88398 -13.44062 -13.37959 -13.28049 -13.18332 -13.08534 -12.46695 -12.36187 -12.32852 -12.08250 -11.85214 -11.36344 -11.25566 -11.11120 -10.87907 -10.68981 -10.55269 -10.33205 -10.24135 -10.08863 -9.92236 -9.56282 -9.49112 -8.96312 -8.70641 -8.33441 -8.11329 -8.02775 -6.25495 -3.76319 1.38376 2.18905 2.27580 3.06692 3.10270 3.11568 3.18487 3.47464 3.82475 3.96729 4.15035 4.18104 4.18976 4.46033 4.56360 4.65061 4.72308 4.83628 4.88671 4.93584 5.07566 5.14137 5.20954 5.27551 5.39991 5.52047 5.61485 5.63060 5.68909 5.70536 5.87207 5.90651 5.94012 5.95940 5.99280 6.02371 6.09460 6.20925 6.36630 6.47453 6.61287 6.83615 7.10163 7.18459 7.46779 7.64068 7.65938 8.21120 8.27270 8.67183 9.01978 9.49301 9.91756 10.87883 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.002555 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.368992 B =10956.487742 C =11833.912718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.462 5.462 3 C 0.185 3.815 4 N -0.455 5.455 5 C -0.056 4.056 6 C 0.602 3.398 7 O -0.559 6.559 8 N -0.590 5.590 9 C 0.129 3.871 10 C 0.046 3.954 11 H 0.102 0.898 12 C -0.144 4.144 13 C -0.147 4.147 14 C 0.058 3.942 15 H 0.112 0.888 16 C 0.109 3.891 17 N -0.477 5.477 18 C 0.032 3.968 19 C 0.456 3.544 20 O -0.556 6.556 21 N -0.595 5.595 22 C -0.301 4.301 23 H 0.119 0.881 24 C 0.040 3.960 25 N -0.884 5.884 26 Si 0.879 3.121 27 H -0.272 1.272 28 H -0.277 1.277 29 H -0.270 1.270 30 C 0.029 3.971 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.213 0.787 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.131 0.869 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.369 0.631 46 H 0.272 0.728 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.311 -15.241 1.238 27.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.144 5.144 3 C -0.098 4.098 4 N -0.174 5.174 5 C -0.185 4.185 6 C 0.390 3.610 7 O -0.438 6.438 8 N -0.321 5.321 9 C 0.007 3.993 10 C -0.064 4.064 11 H 0.120 0.880 12 C -0.183 4.183 13 C -0.186 4.186 14 C -0.051 4.051 15 H 0.130 0.870 16 C -0.014 4.014 17 N -0.200 5.200 18 C -0.100 4.100 19 C 0.241 3.759 20 O -0.437 6.437 21 N -0.235 5.235 22 C -0.430 4.430 23 H 0.137 0.863 24 C -0.163 4.163 25 N -0.524 5.524 26 Si 0.705 3.295 27 H -0.198 1.198 28 H -0.203 1.203 29 H -0.195 1.195 30 C -0.109 4.109 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.229 0.771 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.148 0.852 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.202 0.798 46 H 0.083 0.917 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -22.867 -14.516 2.398 27.191 hybrid contribution 0.047 -1.238 -2.042 2.388 sum -22.820 -15.754 0.356 27.732 Atomic orbital electron populations 1.22147 0.75877 1.05149 1.04049 1.45368 1.08206 1.06946 1.53846 1.25410 0.85356 0.93666 1.05361 1.70588 1.18538 1.10276 1.17993 1.20590 0.93142 0.90489 1.14250 1.16907 0.81802 0.85983 0.76293 1.90752 1.86511 1.13747 1.52783 1.48233 1.04688 1.10825 1.68343 1.22028 0.83325 0.96014 0.97968 1.23508 0.97882 0.90705 0.94308 0.87988 1.22823 0.99512 0.98041 0.97920 1.22861 1.00814 0.95442 0.99465 1.23488 0.88952 0.99621 0.93056 0.86978 1.22667 1.01498 0.79135 0.98066 1.65112 1.03327 1.04217 1.47296 1.22015 0.95443 0.97017 0.95532 1.19646 0.83303 0.87998 0.84923 1.90563 1.54971 1.63482 1.34656 1.42225 1.32827 1.13180 1.35302 1.19419 1.16749 0.85998 1.20795 0.86291 1.25023 0.97239 0.95875 0.98123 1.69620 1.29912 1.11928 1.40989 0.86687 0.80361 0.80043 0.82382 1.19763 1.20265 1.19515 1.22551 0.90173 0.93132 1.05074 0.90088 0.89332 0.88946 0.77101 0.89098 0.90338 0.91867 0.91169 0.91527 0.91911 0.90687 0.85215 0.89409 0.92972 0.79842 0.91724 0.79654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.14 11.15 59.84 0.67 0.80 16 2 N -0.46 -3.09 3.13 -125.78 -0.39 -3.48 16 3 C 0.19 1.50 12.55 -89.91 -1.13 0.37 16 4 N -0.45 -5.45 7.81 -11.03 -0.09 -5.54 16 5 C -0.06 -0.71 6.64 -83.09 -0.55 -1.26 16 6 C 0.60 8.89 7.68 -12.56 -0.10 8.80 16 7 O -0.56 -9.23 16.38 5.26 0.09 -9.15 16 8 N -0.59 -8.54 2.25 -171.75 -0.39 -8.92 16 9 C 0.13 1.74 6.05 -2.51 -0.02 1.73 16 10 C 0.05 0.60 3.63 -65.40 -0.24 0.37 16 11 H 0.10 1.17 7.97 -51.93 -0.41 0.76 16 12 C -0.14 -1.80 5.69 -25.26 -0.14 -1.94 16 13 C -0.15 -2.00 5.46 -25.26 -0.14 -2.13 16 14 C 0.06 0.93 3.22 -65.39 -0.21 0.72 16 15 H 0.11 2.08 7.01 -51.93 -0.36 1.71 16 16 C 0.11 1.65 5.42 -3.19 -0.02 1.64 16 17 N -0.48 -7.87 4.56 -214.15 -0.98 -8.84 16 18 C 0.03 0.55 5.15 -4.97 -0.03 0.52 16 19 C 0.46 10.45 7.43 -10.99 -0.08 10.37 16 20 O -0.56 -14.91 14.94 5.55 0.08 -14.83 16 21 N -0.60 -14.34 5.09 -10.96 -0.06 -14.39 16 22 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 23 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 24 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 25 N -0.88 -26.08 13.96 55.50 0.77 -25.31 16 26 Si 0.88 19.64 27.74 -169.99 -4.71 14.93 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 30 C 0.03 0.28 11.27 -16.64 -0.19 0.09 16 31 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 32 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 33 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 34 H 0.21 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.09 1.18 7.10 -51.93 -0.37 0.82 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.90 7.86 -51.93 -0.41 0.50 16 39 H 0.07 0.90 7.84 -51.93 -0.41 0.50 16 40 H 0.06 0.84 7.93 -51.93 -0.41 0.43 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.13 1.90 4.46 -52.80 -0.24 1.67 16 43 H 0.09 1.34 7.96 -51.93 -0.41 0.92 16 44 H 0.05 0.81 6.98 -51.93 -0.36 0.45 16 45 H 0.37 7.86 5.76 -40.82 -0.24 7.62 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 47 H 0.19 1.40 8.06 -52.48 -0.42 0.97 16 LS Contribution 375.11 15.07 5.65 5.65 Total: -1.00 -36.92 375.11 -8.99 -45.91 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.56 Total: 11.63 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: -2.41 Total: 12.34 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: -1.12 Total: -66.49 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.17 Total: -23.98 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.92 -8.99 -45.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317732984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.575 kcal (2) G-P(sol) polarization free energy of solvation -36.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds