Wall clock time and date at job start Wed Apr 1 2020 05:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35856 * 126.13570 * 2 1 4 4 N 1.30161 * 109.00265 * 179.97438 * 3 2 1 5 5 C 1.35754 * 108.87189 * 0.02562 * 4 3 2 6 6 C 1.47330 * 126.24146 * 180.02562 * 5 4 3 7 7 O 1.21619 * 120.00439 * 173.23357 * 6 5 4 8 8 N 1.34773 * 119.99399 * 353.23216 * 6 5 4 9 9 C 1.48434 * 120.81015 * 173.02536 * 8 6 5 10 10 C 1.53895 * 107.38865 * 132.40935 * 9 8 6 11 11 H 1.08994 * 112.12377 * 182.62351 * 10 9 8 12 12 C 1.54551 * 108.35303 * 307.01089 * 10 9 8 13 13 C 1.54255 * 104.93855 * 89.19187 * 12 10 9 14 14 C 1.54545 * 104.94051 * 0.02562 * 13 12 10 15 15 H 1.08998 * 112.20358 * 146.47248 * 14 13 12 16 16 C 1.47151 * 120.68742 * 353.40918 * 8 6 5 17 17 N 1.48722 * 104.32327 * 24.74233 * 14 13 12 18 18 C 1.46902 * 110.99913 * 78.35686 * 17 14 13 19 19 C 1.50702 * 109.47019 * 75.21136 * 18 17 14 20 20 O 1.21290 * 119.99846 * 359.97438 * 19 18 17 21 21 N 1.34772 * 120.00344 * 180.02562 * 19 18 17 22 22 C 1.37099 * 120.00199 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99963 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00050 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00302 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00092 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46961 * 90.00233 * 26 24 22 28 28 H 1.48491 * 109.47470 * 210.00024 * 26 24 22 29 29 H 1.48504 * 109.47173 * 330.00558 * 26 24 22 30 30 C 1.35380 * 126.13962 * 180.27248 * 2 1 3 31 31 H 1.09001 * 109.47489 * 90.02572 * 1 2 3 32 32 H 1.09000 * 109.47362 * 210.02486 * 1 2 3 33 33 H 1.09000 * 109.47409 * 330.02256 * 1 2 3 34 34 H 1.07996 * 125.49277 * 359.93083 * 3 2 1 35 35 H 1.09006 * 109.56045 * 13.26741 * 9 8 6 36 36 H 1.08994 * 110.58536 * 252.13300 * 9 8 6 37 37 H 1.09000 * 110.34340 * 208.06059 * 12 10 9 38 38 H 1.08998 * 110.34305 * 330.32199 * 12 10 9 39 39 H 1.09002 * 110.34323 * 241.13378 * 13 12 10 40 40 H 1.09001 * 110.43565 * 118.91688 * 13 12 10 41 41 H 1.09002 * 109.74745 * 107.72509 * 16 8 6 42 42 H 1.09004 * 109.74953 * 347.00498 * 16 8 6 43 43 H 1.09001 * 109.47131 * 195.20687 * 18 17 14 44 44 H 1.08994 * 109.47303 * 315.21116 * 18 17 14 45 45 H 0.97006 * 119.99960 * 359.97438 * 21 19 18 46 46 H 0.96995 * 120.00288 * 180.02562 * 25 24 22 47 47 H 1.08003 * 126.55840 * 0.05350 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5099 0.7138 0.0006 5 6 3.5511 -0.6432 0.0003 6 6 4.7653 -1.4777 0.0013 7 8 4.6739 -2.6841 0.1251 8 7 5.9772 -0.9041 -0.1350 9 6 7.2183 -1.7040 0.0167 10 6 8.1321 -1.3655 -1.1744 11 1 9.0529 -1.9486 -1.1640 12 6 7.3272 -1.5679 -2.4781 13 6 6.6529 -0.2063 -2.7445 14 6 7.1100 0.6995 -1.5788 15 1 7.2273 1.7387 -1.8862 16 6 6.0993 0.5325 -0.4295 17 7 8.3930 0.0983 -1.1269 18 6 9.4933 0.4669 -2.0276 19 6 9.8912 1.8983 -1.7749 20 8 9.3146 2.5476 -0.9281 21 7 10.8871 2.4573 -2.4905 22 6 11.2488 3.7596 -2.2609 23 1 10.7359 4.3375 -1.5063 24 6 12.2759 4.3358 -2.9984 25 7 12.6223 5.5843 -2.7787 26 14 13.1644 3.3357 -4.3021 27 1 12.4726 3.4967 -5.6063 28 1 14.5654 3.8129 -4.4228 29 1 13.1614 1.9023 -3.9138 30 6 2.2634 -1.0933 -0.0052 31 1 -0.3634 -0.0005 -1.0277 32 1 -0.3634 -0.8897 0.5142 33 1 -0.3634 0.8902 0.5135 34 1 1.9257 2.1221 -0.0011 35 1 6.9723 -2.7658 0.0020 36 1 7.7229 -1.4552 0.9503 37 1 7.9952 -1.8272 -3.2995 38 1 6.5739 -2.3437 -2.3418 39 1 5.5681 -0.3132 -2.7392 40 1 6.9878 0.2044 -3.6970 41 1 6.4565 1.0606 0.4545 42 1 5.1301 0.9304 -0.7305 43 1 10.3471 -0.1853 -1.8442 44 1 9.1681 0.3575 -3.0622 45 1 11.3480 1.9382 -3.1681 46 1 13.3390 5.9866 -3.2937 47 1 1.9422 -2.1244 -0.0109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317732984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:27 Heat of formation + Delta-G solvation = 12.892291 kcal Electronic energy + Delta-G solvation = -31280.814023 eV Core-core repulsion = 27078.985951 eV Total energy + Delta-G solvation = -4201.828072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.19891 -41.91730 -40.16318 -39.29846 -36.03902 -35.69215 -34.88009 -33.71199 -32.54790 -32.30405 -30.83168 -29.28325 -28.18887 -27.20854 -25.71398 -25.35113 -23.73610 -22.20212 -21.66433 -21.20070 -21.12387 -20.25417 -19.69282 -18.35532 -17.76208 -17.60473 -17.18756 -16.78516 -16.67141 -16.41805 -16.15538 -15.88770 -15.44851 -15.14296 -15.02178 -14.97547 -14.82016 -14.74712 -14.41641 -14.31164 -13.96207 -13.68632 -13.56957 -13.45049 -13.34118 -13.24750 -12.89245 -12.50774 -12.39048 -12.28079 -12.03447 -11.94857 -11.87015 -11.45780 -11.39332 -11.29192 -10.77222 -10.48909 -10.40201 -10.20256 -9.86328 -9.57011 -9.27779 -8.38129 -5.98208 0.58148 1.31537 1.36719 1.43677 1.45554 1.74455 2.01528 2.10275 2.25060 2.48147 2.64718 3.17682 3.20032 3.36492 3.68003 3.74578 3.86146 3.91059 4.01140 4.01339 4.16265 4.21231 4.28684 4.38359 4.42928 4.48915 4.49112 4.52139 4.61759 4.68808 4.74151 4.78062 4.82312 4.86965 4.93411 5.01817 5.08003 5.15704 5.26104 5.44866 5.56248 5.62739 5.88027 5.92672 6.04888 6.16085 6.45192 6.63932 6.81221 6.92841 7.20770 7.44478 8.02748 8.79719 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.002555 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.368992 B =10956.487742 C =11833.912718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.452 5.452 3 C 0.193 3.807 4 N -0.498 5.498 5 C -0.100 4.100 6 C 0.599 3.401 7 O -0.583 6.583 8 N -0.592 5.592 9 C 0.125 3.875 10 C 0.052 3.948 11 H 0.130 0.870 12 C -0.134 4.134 13 C -0.137 4.137 14 C 0.057 3.943 15 H 0.077 0.923 16 C 0.122 3.878 17 N -0.503 5.503 18 C 0.046 3.954 19 C 0.455 3.545 20 O -0.604 6.604 21 N -0.595 5.595 22 C -0.323 4.323 23 H 0.055 0.945 24 C -0.017 4.017 25 N -0.937 5.937 26 Si 0.964 3.036 27 H -0.258 1.258 28 H -0.276 1.276 29 H -0.231 1.231 30 C 0.044 3.956 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.247 0.753 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.137 0.863 43 H 0.121 0.879 44 H 0.080 0.920 45 H 0.388 0.612 46 H 0.278 0.722 47 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.274 -18.295 -0.965 30.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.132 5.132 3 C -0.091 4.091 4 N -0.218 5.218 5 C -0.228 4.228 6 C 0.389 3.611 7 O -0.464 6.464 8 N -0.322 5.322 9 C 0.003 3.997 10 C -0.057 4.057 11 H 0.148 0.852 12 C -0.173 4.173 13 C -0.176 4.176 14 C -0.053 4.053 15 H 0.095 0.905 16 C -0.001 4.001 17 N -0.225 5.225 18 C -0.086 4.086 19 C 0.242 3.758 20 O -0.487 6.487 21 N -0.237 5.237 22 C -0.452 4.452 23 H 0.073 0.927 24 C -0.215 4.215 25 N -0.578 5.578 26 Si 0.784 3.216 27 H -0.182 1.182 28 H -0.201 1.201 29 H -0.155 1.155 30 C -0.097 4.097 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.263 0.737 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.154 0.846 43 H 0.139 0.861 44 H 0.097 0.903 45 H 0.224 0.776 46 H 0.087 0.913 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -23.870 -17.593 0.199 29.654 hybrid contribution 0.131 -0.167 -1.191 1.210 sum -23.739 -17.760 -0.992 29.664 Atomic orbital electron populations 1.22536 0.72673 1.06987 1.05559 1.45633 1.09927 1.05664 1.51984 1.26041 0.84563 0.95247 1.03260 1.70411 1.21088 1.10307 1.19958 1.20497 0.93476 0.90960 1.17844 1.17259 0.82401 0.86005 0.75460 1.90714 1.86942 1.14670 1.54103 1.48243 1.05233 1.10304 1.68431 1.22102 0.83220 0.96277 0.98074 1.23608 0.99043 0.88642 0.94396 0.85215 1.22759 0.99584 0.96886 0.98044 1.22757 1.00808 0.95654 0.98404 1.23331 0.89324 0.98302 0.94335 0.90460 1.22436 1.01584 0.79598 0.96457 1.65047 1.03250 1.06469 1.47768 1.21921 0.96885 0.92689 0.97085 1.20856 0.81622 0.90157 0.83147 1.90549 1.56189 1.65437 1.36558 1.42041 1.33644 1.11739 1.36293 1.18980 1.17653 0.87992 1.20603 0.92729 1.26096 0.97554 0.97157 1.00718 1.69807 1.30807 1.14450 1.42705 0.85378 0.78124 0.79806 0.78297 1.18216 1.20124 1.15469 1.22784 0.89489 0.94432 1.03006 0.88667 0.87981 0.86767 0.73741 0.88321 0.91197 0.89608 0.91315 0.91774 0.91314 0.94001 0.84589 0.86146 0.90259 0.77638 0.91259 0.78028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.04 11.15 127.77 1.42 1.47 16 2 N -0.45 -5.08 3.13 -551.86 -1.73 -6.80 16 3 C 0.19 2.86 12.55 180.10 2.26 5.12 16 4 N -0.50 -12.09 7.81 -188.82 -1.47 -13.57 16 5 C -0.10 -2.55 6.64 40.51 0.27 -2.28 16 6 C 0.60 17.98 7.68 86.64 0.67 18.64 16 7 O -0.58 -19.31 16.38 -4.09 -0.07 -19.38 16 8 N -0.59 -17.51 2.25 -815.55 -1.84 -19.34 16 9 C 0.13 3.34 6.05 86.31 0.52 3.86 16 10 C 0.05 1.26 3.63 45.38 0.16 1.42 16 11 H 0.13 2.46 7.97 -2.39 -0.02 2.45 16 12 C -0.13 -2.97 5.69 31.55 0.18 -2.79 16 13 C -0.14 -3.56 5.46 31.55 0.17 -3.39 16 14 C 0.06 1.85 3.22 45.41 0.15 1.99 16 15 H 0.08 3.05 7.01 -2.39 -0.02 3.03 16 16 C 0.12 3.93 5.42 86.58 0.47 4.40 16 17 N -0.50 -16.21 4.56 -831.43 -3.79 -20.00 16 18 C 0.05 1.46 5.15 85.56 0.44 1.90 16 19 C 0.45 21.05 7.43 87.66 0.65 21.70 16 20 O -0.60 -34.23 14.94 -3.06 -0.05 -34.28 16 21 N -0.59 -28.58 5.09 -306.99 -1.56 -30.14 16 22 C -0.32 -19.20 10.16 84.04 0.85 -18.34 16 23 H 0.05 3.87 7.39 -2.91 -0.02 3.84 16 24 C -0.02 -0.96 5.50 84.93 0.47 -0.50 16 25 N -0.94 -57.25 13.96 21.66 0.30 -56.95 16 26 Si 0.96 39.40 27.74 68.60 1.90 41.30 16 27 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 28 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 29 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 30 C 0.04 0.78 11.27 83.72 0.94 1.72 16 31 H 0.09 -0.13 8.14 -2.39 -0.02 -0.14 16 32 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 34 H 0.25 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.10 2.49 7.10 -2.38 -0.02 2.47 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.60 7.86 -2.39 -0.02 1.58 16 39 H 0.06 1.70 7.84 -2.39 -0.02 1.68 16 40 H 0.07 1.70 7.93 -2.39 -0.02 1.68 16 41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.14 4.24 4.46 -4.11 -0.02 4.22 16 43 H 0.12 3.15 7.96 -2.39 -0.02 3.13 16 44 H 0.08 2.17 6.98 -2.39 -0.02 2.15 16 45 H 0.39 15.47 5.76 -92.70 -0.53 14.94 16 46 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 47 H 0.20 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -88.58 375.11 1.74 -86.83 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: 0.41 Total: 37.39 kcal Atomic # 6 Polarization: 25.30 SS G_CDS: 9.63 Total: 34.93 kcal Atomic # 7 Polarization: -136.71 SS G_CDS: -10.09 Total: -146.80 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -0.11 Total: -53.66 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.90 Total: 41.30 kcal Total: -88.58 1.74 -86.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317732984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.726 kcal (2) G-P(sol) polarization free energy of solvation -88.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds