Wall clock time and date at job start Wed Apr 1 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00291 * 2 1 4 4 C 1.50696 * 109.46978 * 66.04554 * 3 2 1 5 5 O 1.21295 * 120.00238 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00076 * 180.02562 * 4 3 2 7 7 C 1.37105 * 120.00244 * 180.02562 * 6 4 3 8 8 H 1.07998 * 119.99708 * 359.97438 * 7 6 4 9 9 C 1.38945 * 120.00017 * 179.97438 * 7 6 4 10 10 N 1.31413 * 119.99901 * 359.71836 * 9 7 6 11 11 Si 1.86800 * 120.00194 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47364 * 179.72210 * 11 9 7 13 13 H 1.48508 * 109.46883 * 299.72333 * 11 9 7 14 14 H 1.48497 * 109.46870 * 59.72143 * 11 9 7 15 15 C 1.46896 * 111.00124 * 236.04407 * 2 1 3 16 16 C 1.53004 * 109.47166 * 293.95737 * 15 2 1 17 17 H 1.08997 * 110.89035 * 57.42356 * 16 15 2 18 18 C 1.55152 * 111.00564 * 181.34677 * 16 15 2 19 19 C 1.54329 * 102.94523 * 153.57257 * 18 16 15 20 20 N 1.47023 * 107.26801 * 337.81446 * 19 18 16 21 21 C 1.34775 * 125.64687 * 178.90943 * 20 19 18 22 22 O 1.21512 * 120.00057 * 180.02562 * 21 20 19 23 23 C 1.48152 * 119.99890 * 0.02654 * 21 20 19 24 24 C 1.39445 * 120.09345 * 180.02562 * 23 21 20 25 25 N 1.32079 * 119.86896 * 180.02562 * 24 23 21 26 26 C 1.32133 * 120.07428 * 0.02562 * 25 24 23 27 27 C 1.38727 * 120.19480 * 0.02562 * 26 25 24 28 28 N 1.31798 * 120.12840 * 359.71967 * 27 26 25 29 29 C 1.47427 * 108.70472 * 358.93155 * 20 19 18 30 30 H 1.08997 * 109.47316 * 59.99733 * 1 2 3 31 31 H 1.09003 * 109.47554 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46965 * 299.99908 * 1 2 3 33 33 H 1.08999 * 109.46697 * 306.04994 * 3 2 1 34 34 H 1.08993 * 109.47253 * 186.04644 * 3 2 1 35 35 H 0.97004 * 119.99652 * 359.97438 * 6 4 3 36 36 H 0.97000 * 120.00371 * 0.28325 * 10 9 7 37 37 H 1.09000 * 109.46922 * 53.94995 * 15 2 1 38 38 H 1.08995 * 109.47326 * 173.95598 * 15 2 1 39 39 H 1.08996 * 110.72576 * 271.93855 * 18 16 15 40 40 H 1.08998 * 110.71967 * 35.21353 * 18 16 15 41 41 H 1.08991 * 109.88269 * 218.39279 * 19 18 16 42 42 H 1.09002 * 110.00613 * 97.29575 * 19 18 16 43 43 H 1.07999 * 120.06574 * 0.03172 * 24 23 21 44 44 H 1.08007 * 119.90232 * 180.02562 * 26 25 24 45 45 H 1.08002 * 119.93606 * 179.97438 * 27 26 25 46 46 H 1.08998 * 110.37048 * 265.29515 * 29 20 19 47 47 H 1.08998 * 110.36410 * 142.97086 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0046 1.4456 2.1408 6 7 2.0181 3.3201 1.5233 7 6 1.6924 3.9347 2.7048 8 1 1.1301 3.3988 3.4551 9 6 2.0858 5.2470 2.9369 10 7 2.7748 5.8972 2.0261 11 14 1.6414 6.0846 4.5463 12 1 2.1795 7.4687 4.5491 13 1 0.1640 6.1275 4.6906 14 1 2.2275 5.3234 5.6787 15 6 1.9954 -0.7660 -1.1375 16 6 1.6314 -2.2427 -0.9703 17 1 0.5523 -2.3696 -0.8840 18 6 2.2003 -3.0914 -2.1378 19 6 2.3578 -4.4897 -1.5040 20 7 2.4368 -4.3024 -0.0478 21 6 2.5569 -5.2864 0.8653 22 8 2.6129 -5.0141 2.0482 23 6 2.6209 -6.7001 0.4267 24 6 2.7447 -7.7198 1.3698 25 7 2.8017 -8.9786 0.9739 26 6 2.7422 -9.2712 -0.3133 27 6 2.6201 -8.2590 -1.2540 28 7 2.5574 -7.0006 -0.8673 29 6 2.3622 -2.8601 0.2481 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.5611 1.9273 -0.8309 34 1 3.0797 1.3444 -0.1082 35 1 2.5235 3.8013 0.8495 36 1 3.0052 5.4624 1.1902 37 1 1.5610 -0.3873 -2.0627 38 1 3.0797 -0.6612 -1.1755 39 1 1.4976 -3.1224 -2.9704 40 1 3.1663 -2.7038 -2.4613 41 1 3.2711 -4.9606 -1.8673 42 1 1.4968 -5.1106 -1.7517 43 1 2.7937 -7.4808 2.4219 44 1 2.7887 -10.3016 -0.6339 45 1 2.5722 -8.5029 -2.3050 46 1 3.3634 -2.4399 0.3428 47 1 1.7903 -2.6891 1.1601 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317827184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:35 Heat of formation + Delta-G solvation = 5.111001 kcal Electronic energy + Delta-G solvation = -29708.465116 eV Core-core repulsion = 25506.299623 eV Total energy + Delta-G solvation = -4202.165494 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.73670 -40.03433 -38.79278 -37.89083 -36.22837 -34.94399 -34.17854 -32.52081 -31.84641 -31.07430 -29.55444 -27.83037 -27.09168 -25.76168 -25.00935 -24.37288 -23.47560 -22.01971 -20.56269 -20.04618 -19.51231 -18.31723 -17.86318 -17.64600 -17.28987 -16.71722 -16.12049 -16.05547 -15.68176 -15.32868 -15.13065 -15.01500 -14.54128 -14.18968 -13.86170 -13.78136 -13.61217 -13.55720 -13.36803 -13.05233 -12.81763 -12.58651 -12.30170 -12.14034 -11.86451 -11.73129 -11.44622 -11.31812 -11.19313 -11.11905 -11.05476 -10.84096 -10.65341 -10.58622 -10.18440 -9.98324 -9.82764 -9.58428 -9.48135 -8.82985 -8.49330 -8.01784 -7.89569 -6.72419 -3.85324 -0.10335 0.50424 2.37932 2.56440 3.30522 3.33571 3.37239 3.42313 3.57377 3.66733 3.83511 3.87944 3.90133 4.18025 4.32421 4.36395 4.51166 4.62186 4.63665 4.73536 4.94190 4.98750 5.04446 5.15687 5.25390 5.29642 5.45569 5.53530 5.54759 5.59392 5.64503 5.69844 5.71572 5.79457 5.86858 5.92061 6.00382 6.02732 6.06798 6.16918 6.52779 6.56582 7.07336 7.18159 7.23557 7.32297 7.79894 7.84264 8.11398 8.63546 8.84039 9.50943 9.92291 10.71086 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.001850 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.101430 B =15128.491522 C =16012.785794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.518 5.518 3 C 0.046 3.954 4 C 0.447 3.553 5 O -0.569 6.569 6 N -0.577 5.577 7 C -0.380 4.380 8 H 0.099 0.901 9 C -0.010 4.010 10 N -0.902 5.902 11 Si 1.091 2.909 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.065 3.935 16 C -0.095 4.095 17 H 0.087 0.913 18 C -0.132 4.132 19 C 0.118 3.882 20 N -0.599 5.599 21 C 0.583 3.417 22 O -0.523 6.523 23 C 0.036 3.964 24 C 0.111 3.889 25 N -0.440 5.440 26 C 0.070 3.930 27 C 0.046 3.954 28 N -0.408 5.408 29 C 0.121 3.879 30 H 0.014 0.986 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.375 0.625 36 H 0.260 0.740 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.184 0.816 44 H 0.176 0.824 45 H 0.177 0.823 46 H 0.074 0.926 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.625 -26.621 -14.968 30.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.242 5.242 3 C -0.085 4.085 4 C 0.232 3.768 5 O -0.452 6.452 6 N -0.216 5.216 7 C -0.510 4.510 8 H 0.117 0.883 9 C -0.212 4.212 10 N -0.542 5.542 11 Si 0.917 3.083 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.210 1.210 15 C -0.064 4.064 16 C -0.114 4.114 17 H 0.106 0.894 18 C -0.171 4.171 19 C -0.005 4.005 20 N -0.332 5.332 21 C 0.368 3.632 22 O -0.398 6.398 23 C -0.105 4.105 24 C -0.049 4.049 25 N -0.154 5.154 26 C -0.091 4.091 27 C -0.116 4.116 28 N -0.126 5.126 29 C -0.001 4.001 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.208 0.792 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.201 0.799 44 H 0.193 0.807 45 H 0.195 0.805 46 H 0.093 0.907 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.526 -25.686 -12.346 28.503 hybrid contribution -0.049 -0.914 -2.334 2.507 sum 0.477 -26.599 -14.680 30.385 Atomic orbital electron populations 1.22586 0.86746 1.01473 1.01968 1.61568 1.08760 1.12664 1.41181 1.21861 1.00590 0.89083 0.96965 1.19665 0.85462 0.82621 0.89020 1.90496 1.43385 1.64336 1.47016 1.41944 1.50241 1.11459 1.17937 1.20524 1.36543 0.98590 0.95302 0.88336 1.26490 0.95599 0.93634 1.05516 1.70903 1.36586 1.39169 1.07519 0.83137 0.76361 0.75958 0.72849 1.20458 1.21066 1.20989 1.22080 1.00324 0.91901 0.92056 1.22380 1.00726 0.94166 0.94171 0.89443 1.22792 1.02173 0.94278 0.97844 1.22086 1.02619 0.96772 0.79012 1.48372 1.70235 1.07154 1.07427 1.17252 0.78037 0.82906 0.84974 1.90864 1.50488 1.82683 1.15811 1.22201 1.01383 0.96207 0.90736 1.23889 0.91407 0.87368 1.02210 1.68654 1.09118 1.20009 1.17594 1.24136 0.93560 1.01996 0.89403 1.23922 0.96909 0.88515 1.02267 1.68627 1.06771 1.21023 1.16205 1.22305 1.01298 0.77120 0.99335 0.96727 0.92081 0.88580 0.93565 0.89485 0.79233 0.92821 0.94438 0.90523 0.89920 0.90332 0.90838 0.90719 0.79894 0.80705 0.80549 0.90736 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.02 60.06 0.54 0.86 16 2 N -0.52 -8.22 4.32 -244.38 -1.06 -9.28 16 3 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 4 C 0.45 10.53 7.51 -10.99 -0.08 10.44 16 5 O -0.57 -15.46 13.88 5.54 0.08 -15.38 16 6 N -0.58 -14.57 5.28 -10.96 -0.06 -14.63 16 7 C -0.38 -10.76 9.68 -14.93 -0.14 -10.91 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 C -0.01 -0.28 5.50 -17.47 -0.10 -0.38 16 10 N -0.90 -25.42 13.68 55.50 0.76 -24.66 16 11 Si 1.09 24.57 29.92 -169.99 -5.09 19.48 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 15 C 0.07 0.74 4.41 -3.82 -0.02 0.73 16 16 C -0.09 -0.97 2.90 -88.47 -0.26 -1.23 16 17 H 0.09 0.93 6.46 -51.93 -0.34 0.60 16 18 C -0.13 -0.97 6.42 -24.90 -0.16 -1.13 16 19 C 0.12 0.99 5.41 -3.06 -0.02 0.98 16 20 N -0.60 -7.01 3.33 -171.51 -0.57 -7.58 16 21 C 0.58 7.64 7.84 -12.19 -0.10 7.55 16 22 O -0.52 -8.60 16.60 5.36 0.09 -8.51 16 23 C 0.04 0.37 6.72 -82.84 -0.56 -0.18 16 24 C 0.11 1.08 10.77 -17.00 -0.18 0.89 16 25 N -0.44 -3.81 10.49 -12.71 -0.13 -3.94 16 26 C 0.07 0.38 11.23 -17.24 -0.19 0.19 16 27 C 0.05 0.24 11.22 -17.39 -0.20 0.04 16 28 N -0.41 -3.39 7.04 -9.61 -0.07 -3.46 16 29 C 0.12 1.53 6.21 -2.53 -0.02 1.51 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.84 6.28 -51.93 -0.33 0.51 16 32 H 0.10 1.90 5.88 -51.93 -0.31 1.59 16 33 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.09 1.35 7.93 -51.93 -0.41 0.94 16 35 H 0.37 8.72 6.73 -40.82 -0.27 8.44 16 36 H 0.26 7.04 6.78 -40.82 -0.28 6.76 16 37 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 38 H 0.08 0.82 7.89 -51.93 -0.41 0.41 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 41 H 0.07 0.59 7.55 -51.93 -0.39 0.20 16 42 H 0.07 0.61 7.41 -51.93 -0.38 0.22 16 43 H 0.18 1.69 7.65 -52.49 -0.40 1.29 16 44 H 0.18 0.30 8.06 -52.48 -0.42 -0.13 16 45 H 0.18 0.25 8.06 -52.49 -0.42 -0.17 16 46 H 0.07 0.97 8.00 -51.93 -0.42 0.56 16 47 H 0.09 1.42 8.04 -51.93 -0.42 1.00 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -36.13 386.60 -8.19 -44.32 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.47 Total: 7.66 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -1.50 Total: 10.14 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -1.13 Total: -63.54 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.17 Total: -23.89 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.09 Total: 19.48 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.13 -8.19 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317827184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.435 kcal (2) G-P(sol) polarization free energy of solvation -36.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds