Wall clock time and date at job start Wed Apr 1 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00291 * 2 1 4 4 C 1.50696 * 109.46978 * 66.04554 * 3 2 1 5 5 O 1.21295 * 120.00238 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00076 * 180.02562 * 4 3 2 7 7 C 1.37105 * 120.00244 * 180.02562 * 6 4 3 8 8 H 1.07998 * 119.99708 * 359.97438 * 7 6 4 9 9 C 1.38945 * 120.00017 * 179.97438 * 7 6 4 10 10 N 1.31413 * 119.99901 * 359.71836 * 9 7 6 11 11 Si 1.86800 * 120.00194 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47364 * 179.72210 * 11 9 7 13 13 H 1.48508 * 109.46883 * 299.72333 * 11 9 7 14 14 H 1.48497 * 109.46870 * 59.72143 * 11 9 7 15 15 C 1.46896 * 111.00124 * 236.04407 * 2 1 3 16 16 C 1.53004 * 109.47166 * 293.95737 * 15 2 1 17 17 H 1.08997 * 110.89035 * 57.42356 * 16 15 2 18 18 C 1.55152 * 111.00564 * 181.34677 * 16 15 2 19 19 C 1.54329 * 102.94523 * 153.57257 * 18 16 15 20 20 N 1.47023 * 107.26801 * 337.81446 * 19 18 16 21 21 C 1.34775 * 125.64687 * 178.90943 * 20 19 18 22 22 O 1.21512 * 120.00057 * 180.02562 * 21 20 19 23 23 C 1.48152 * 119.99890 * 0.02654 * 21 20 19 24 24 C 1.39445 * 120.09345 * 180.02562 * 23 21 20 25 25 N 1.32079 * 119.86896 * 180.02562 * 24 23 21 26 26 C 1.32133 * 120.07428 * 0.02562 * 25 24 23 27 27 C 1.38727 * 120.19480 * 0.02562 * 26 25 24 28 28 N 1.31798 * 120.12840 * 359.71967 * 27 26 25 29 29 C 1.47427 * 108.70472 * 358.93155 * 20 19 18 30 30 H 1.08997 * 109.47316 * 59.99733 * 1 2 3 31 31 H 1.09003 * 109.47554 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46965 * 299.99908 * 1 2 3 33 33 H 1.08999 * 109.46697 * 306.04994 * 3 2 1 34 34 H 1.08993 * 109.47253 * 186.04644 * 3 2 1 35 35 H 0.97004 * 119.99652 * 359.97438 * 6 4 3 36 36 H 0.97000 * 120.00371 * 0.28325 * 10 9 7 37 37 H 1.09000 * 109.46922 * 53.94995 * 15 2 1 38 38 H 1.08995 * 109.47326 * 173.95598 * 15 2 1 39 39 H 1.08996 * 110.72576 * 271.93855 * 18 16 15 40 40 H 1.08998 * 110.71967 * 35.21353 * 18 16 15 41 41 H 1.08991 * 109.88269 * 218.39279 * 19 18 16 42 42 H 1.09002 * 110.00613 * 97.29575 * 19 18 16 43 43 H 1.07999 * 120.06574 * 0.03172 * 24 23 21 44 44 H 1.08007 * 119.90232 * 180.02562 * 26 25 24 45 45 H 1.08002 * 119.93606 * 179.97438 * 27 26 25 46 46 H 1.08998 * 110.37048 * 265.29515 * 29 20 19 47 47 H 1.08998 * 110.36410 * 142.97086 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0046 1.4456 2.1408 6 7 2.0181 3.3201 1.5233 7 6 1.6924 3.9347 2.7048 8 1 1.1301 3.3988 3.4551 9 6 2.0858 5.2470 2.9369 10 7 2.7748 5.8972 2.0261 11 14 1.6414 6.0846 4.5463 12 1 2.1795 7.4687 4.5491 13 1 0.1640 6.1275 4.6906 14 1 2.2275 5.3234 5.6787 15 6 1.9954 -0.7660 -1.1375 16 6 1.6314 -2.2427 -0.9703 17 1 0.5523 -2.3696 -0.8840 18 6 2.2003 -3.0914 -2.1378 19 6 2.3578 -4.4897 -1.5040 20 7 2.4368 -4.3024 -0.0478 21 6 2.5569 -5.2864 0.8653 22 8 2.6129 -5.0141 2.0482 23 6 2.6209 -6.7001 0.4267 24 6 2.7447 -7.7198 1.3698 25 7 2.8017 -8.9786 0.9739 26 6 2.7422 -9.2712 -0.3133 27 6 2.6201 -8.2590 -1.2540 28 7 2.5574 -7.0006 -0.8673 29 6 2.3622 -2.8601 0.2481 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.5611 1.9273 -0.8309 34 1 3.0797 1.3444 -0.1082 35 1 2.5235 3.8013 0.8495 36 1 3.0052 5.4624 1.1902 37 1 1.5610 -0.3873 -2.0627 38 1 3.0797 -0.6612 -1.1755 39 1 1.4976 -3.1224 -2.9704 40 1 3.1663 -2.7038 -2.4613 41 1 3.2711 -4.9606 -1.8673 42 1 1.4968 -5.1106 -1.7517 43 1 2.7937 -7.4808 2.4219 44 1 2.7887 -10.3016 -0.6339 45 1 2.5722 -8.5029 -2.3050 46 1 3.3634 -2.4399 0.3428 47 1 1.7903 -2.6891 1.1601 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317827184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:32 Heat of formation + Delta-G solvation = -23.266232 kcal Electronic energy + Delta-G solvation = -29709.695645 eV Core-core repulsion = 25506.299623 eV Total energy + Delta-G solvation = -4203.396023 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.37872 -40.93728 -40.42872 -39.05702 -37.51734 -36.21538 -35.54593 -33.40412 -33.11406 -32.53576 -30.43335 -29.25835 -28.07588 -26.79815 -26.14948 -25.50557 -24.46503 -23.08899 -21.38712 -21.30060 -20.96025 -19.93655 -19.03266 -18.36718 -18.17182 -17.85587 -17.22975 -16.98240 -16.93302 -16.61803 -16.38104 -15.82727 -15.62330 -15.49342 -15.30178 -15.26538 -15.03012 -14.46094 -14.14422 -14.02819 -13.80213 -13.71269 -13.42692 -13.34593 -13.05557 -12.87838 -12.69118 -12.60616 -12.47250 -12.32642 -12.00051 -11.92861 -11.91670 -11.86320 -11.57649 -11.48806 -11.44798 -10.58731 -10.32715 -10.19791 -10.08250 -9.75425 -9.19603 -8.91683 -6.05023 -0.73014 -0.04870 1.52484 1.53616 1.53701 1.70765 1.81705 2.03232 2.39087 2.66090 2.67787 2.81095 3.13380 3.17249 3.26781 3.34368 3.50831 3.64447 3.73342 3.85133 4.07177 4.09637 4.27221 4.29633 4.32711 4.37225 4.41240 4.46069 4.49650 4.51599 4.61008 4.68799 4.78251 4.81022 4.95289 5.00410 5.07288 5.19075 5.20136 5.27865 5.39430 5.60586 5.93892 5.99773 6.00903 6.19169 6.30028 6.55866 6.60210 6.77971 6.85745 7.46596 7.97218 8.56313 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.001850 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.101430 B =15128.491522 C =16012.785794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.543 5.543 3 C 0.060 3.940 4 C 0.443 3.557 5 O -0.611 6.611 6 N -0.589 5.589 7 C -0.408 4.408 8 H 0.070 0.930 9 C -0.043 4.043 10 N -0.917 5.917 11 Si 1.132 2.868 12 H -0.271 1.271 13 H -0.273 1.273 14 H -0.276 1.276 15 C 0.068 3.932 16 C -0.087 4.087 17 H 0.083 0.917 18 C -0.117 4.117 19 C 0.118 3.882 20 N -0.600 5.600 21 C 0.573 3.427 22 O -0.576 6.576 23 C 0.014 3.986 24 C 0.097 3.903 25 N -0.462 5.462 26 C 0.085 3.915 27 C 0.060 3.940 28 N -0.415 5.415 29 C 0.120 3.880 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.384 0.616 36 H 0.259 0.741 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.170 0.830 44 H 0.220 0.780 45 H 0.226 0.774 46 H 0.066 0.934 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.009 -28.537 -18.961 34.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.267 5.267 3 C -0.071 4.071 4 C 0.231 3.769 5 O -0.496 6.496 6 N -0.229 5.229 7 C -0.538 4.538 8 H 0.088 0.912 9 C -0.241 4.241 10 N -0.557 5.557 11 Si 0.952 3.048 12 H -0.196 1.196 13 H -0.199 1.199 14 H -0.201 1.201 15 C -0.059 4.059 16 C -0.106 4.106 17 H 0.102 0.898 18 C -0.155 4.155 19 C -0.004 4.004 20 N -0.331 5.331 21 C 0.361 3.639 22 O -0.456 6.456 23 C -0.124 4.124 24 C -0.060 4.060 25 N -0.176 5.176 26 C -0.077 4.077 27 C -0.104 4.104 28 N -0.133 5.133 29 C -0.003 4.003 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.218 0.782 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.188 0.812 44 H 0.236 0.764 45 H 0.242 0.758 46 H 0.084 0.916 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.919 -27.586 -16.386 32.099 hybrid contribution -0.176 -0.559 -1.214 1.348 sum 0.743 -28.145 -17.599 33.203 Atomic orbital electron populations 1.22409 0.87097 1.02071 1.00456 1.61488 1.08750 1.12102 1.44371 1.21735 1.02171 0.89743 0.93476 1.20906 0.83417 0.81871 0.90697 1.90484 1.44720 1.65179 1.49180 1.41998 1.51052 1.12331 1.17519 1.20483 1.37601 0.99322 0.96358 0.91185 1.27765 0.94713 0.93827 1.07769 1.70968 1.37327 1.39428 1.07929 0.82645 0.76879 0.75445 0.69806 1.19573 1.19858 1.20136 1.22178 1.01020 0.91516 0.91195 1.22308 1.00227 0.93878 0.94194 0.89833 1.22805 1.03435 0.92295 0.97004 1.22289 1.03429 0.97920 0.76718 1.48518 1.69250 1.06405 1.08929 1.17798 0.77185 0.84408 0.84557 1.90814 1.53005 1.83768 1.17980 1.21693 1.04284 0.94407 0.92015 1.23711 0.92424 0.88067 1.01834 1.68690 1.10142 1.19071 1.19745 1.24964 0.90429 1.04226 0.88109 1.24754 0.94184 0.87052 1.04372 1.68595 1.07151 1.22891 1.14682 1.22193 1.00496 0.78446 0.99129 0.94810 0.90490 0.93317 0.91015 0.87092 0.78154 0.92975 0.91816 0.89315 0.87144 0.88877 0.89830 0.89979 0.81243 0.76361 0.75805 0.91560 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 9.02 127.69 1.15 2.02 16 2 N -0.54 -16.77 4.32 -927.07 -4.01 -20.77 16 3 C 0.06 2.00 5.45 85.56 0.47 2.47 16 4 C 0.44 21.37 7.51 87.66 0.66 22.03 16 5 O -0.61 -34.76 13.88 -3.08 -0.04 -34.81 16 6 N -0.59 -30.42 5.28 -306.98 -1.62 -32.04 16 7 C -0.41 -23.86 9.68 84.04 0.81 -23.04 16 8 H 0.07 4.42 7.16 -2.91 -0.02 4.40 16 9 C -0.04 -2.36 5.50 84.92 0.47 -1.89 16 10 N -0.92 -51.77 13.68 21.66 0.30 -51.48 16 11 Si 1.13 49.80 29.92 68.60 2.05 51.85 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 14 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 15 C 0.07 1.37 4.41 86.31 0.38 1.75 16 16 C -0.09 -1.61 2.90 -9.40 -0.03 -1.64 16 17 H 0.08 1.64 6.46 -2.39 -0.02 1.63 16 18 C -0.12 -1.29 6.42 31.78 0.20 -1.08 16 19 C 0.12 1.72 5.41 86.73 0.47 2.18 16 20 N -0.60 -14.28 3.33 -814.85 -2.71 -16.99 16 21 C 0.57 16.12 7.84 86.88 0.68 16.80 16 22 O -0.58 -21.11 16.60 -3.75 -0.06 -21.17 16 23 C 0.01 0.31 6.72 41.89 0.28 0.59 16 24 C 0.10 1.99 10.77 84.95 0.92 2.91 16 25 N -0.46 -7.53 10.49 -194.12 -2.04 -9.57 16 26 C 0.08 0.62 11.23 84.76 0.95 1.58 16 27 C 0.06 0.38 11.22 84.81 0.95 1.34 16 28 N -0.42 -6.01 7.04 -184.33 -1.30 -7.31 16 29 C 0.12 3.14 6.21 86.86 0.54 3.68 16 30 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 2.11 6.28 -2.39 -0.01 2.10 16 32 H 0.05 2.01 5.88 -2.38 -0.01 1.99 16 33 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 34 H 0.11 3.21 7.93 -2.39 -0.02 3.19 16 35 H 0.38 18.07 6.73 -92.71 -0.62 17.44 16 36 H 0.26 14.10 6.78 -92.71 -0.63 13.47 16 37 H 0.06 1.02 8.12 -2.39 -0.02 1.00 16 38 H 0.09 1.60 7.89 -2.39 -0.02 1.58 16 39 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.82 8.04 -2.39 -0.02 0.80 16 41 H 0.08 1.09 7.55 -2.39 -0.02 1.07 16 42 H 0.08 1.10 7.41 -2.39 -0.02 1.09 16 43 H 0.17 3.69 7.65 -2.91 -0.02 3.66 16 44 H 0.22 -0.42 8.06 -2.91 -0.02 -0.45 16 45 H 0.23 -0.78 8.06 -2.91 -0.02 -0.80 16 46 H 0.07 1.80 8.00 -2.39 -0.02 1.79 16 47 H 0.05 1.66 8.04 -2.39 -0.02 1.64 16 Total: -1.00 -85.87 386.60 0.00 -85.87 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.53 Total: 26.74 kcal Atomic # 6 Polarization: 20.78 SS G_CDS: 8.90 Total: 29.68 kcal Atomic # 7 Polarization: -126.78 SS G_CDS: -11.38 Total: -138.16 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -0.11 Total: -55.98 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.85 kcal Total: -85.87 0.00 -85.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317827184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.600 kcal (2) G-P(sol) polarization free energy of solvation -85.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds