Wall clock time and date at job start Wed Apr 1 2020 06:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46891 * 111.00281 * 2 1 4 4 C 1.50695 * 109.47186 * 66.04760 * 3 2 1 5 5 O 1.21286 * 120.00258 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00203 * 179.97438 * 4 3 2 7 7 C 1.37102 * 120.00342 * 180.02562 * 6 4 3 8 8 H 1.07998 * 119.99833 * 359.97438 * 7 6 4 9 9 C 1.38948 * 120.00142 * 180.02562 * 7 6 4 10 10 N 1.31418 * 119.99861 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00186 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46789 * 90.00223 * 11 9 7 13 13 H 1.48499 * 109.47253 * 210.00152 * 11 9 7 14 14 H 1.48497 * 109.46941 * 330.00257 * 11 9 7 15 15 C 1.46908 * 110.99842 * 236.04672 * 2 1 3 16 16 C 1.53005 * 109.46994 * 294.30374 * 15 2 1 17 17 H 1.09003 * 109.99833 * 52.56697 * 16 15 2 18 18 C 1.54319 * 109.88217 * 291.47250 * 16 15 2 19 19 C 1.55155 * 102.94456 * 218.39176 * 18 16 15 20 20 C 1.54690 * 101.67469 * 35.33083 * 19 18 16 21 21 N 1.47015 * 109.88189 * 173.66363 * 16 15 2 22 22 C 1.34787 * 125.64976 * 298.31995 * 21 16 15 23 23 O 1.21281 * 119.99590 * 354.97497 * 22 21 16 24 24 C 1.50697 * 119.99606 * 174.70144 * 22 21 16 25 25 C 1.53010 * 109.46618 * 180.02562 * 24 22 21 26 26 C 1.52998 * 109.46843 * 180.02562 * 25 24 22 27 27 F 1.39898 * 109.47380 * 65.00020 * 26 25 24 28 28 F 1.39900 * 109.46877 * 185.00207 * 26 25 24 29 29 H 1.08998 * 109.47757 * 179.85439 * 1 2 3 30 30 H 1.09003 * 109.47014 * 299.85248 * 1 2 3 31 31 H 1.09003 * 109.46988 * 59.84930 * 1 2 3 32 32 H 1.09008 * 109.47295 * 186.04765 * 3 2 1 33 33 H 1.09002 * 109.47182 * 306.04415 * 3 2 1 34 34 H 0.97007 * 119.99924 * 0.02562 * 6 4 3 35 35 H 0.96993 * 119.99478 * 180.02562 * 10 9 7 36 36 H 1.08994 * 109.47108 * 174.30352 * 15 2 1 37 37 H 1.09003 * 109.46787 * 54.30025 * 15 2 1 38 38 H 1.09005 * 110.72372 * 336.75329 * 18 16 15 39 39 H 1.08997 * 110.72177 * 100.02493 * 18 16 15 40 40 H 1.08992 * 111.00989 * 153.57353 * 19 18 16 41 41 H 1.09006 * 110.99999 * 277.39149 * 19 18 16 42 42 H 1.09007 * 110.39331 * 204.36325 * 20 19 18 43 43 H 1.09000 * 110.23373 * 82.11609 * 20 19 18 44 44 H 1.09000 * 109.47517 * 299.99445 * 24 22 21 45 45 H 1.08997 * 109.47221 * 60.00503 * 24 22 21 46 46 H 1.09000 * 109.46634 * 299.99876 * 25 24 22 47 47 H 1.08999 * 109.46876 * 59.99729 * 25 24 22 48 48 H 1.09001 * 109.46707 * 304.99667 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 8 1.0055 1.4453 2.1411 6 7 2.0190 3.3197 1.5237 7 6 1.6934 3.9343 2.7052 8 1 1.1304 3.3987 3.4552 9 6 2.0868 5.2466 2.9372 10 7 1.7751 5.8355 4.0700 11 14 3.0600 6.1732 1.6397 12 1 2.1233 6.8774 0.7275 13 1 3.9468 7.1645 2.3001 14 1 3.8834 5.2145 0.8600 15 6 1.9954 -0.7660 -1.1377 16 6 1.6239 -2.2413 -0.9748 17 1 0.5512 -2.3393 -0.8076 18 6 2.3980 -2.8493 0.2137 19 6 2.7509 -4.2727 -0.2931 20 6 3.0014 -4.0160 -1.7979 21 7 2.0128 -2.9907 -2.1783 22 6 1.5396 -2.7792 -3.4225 23 8 0.6548 -1.9701 -3.6053 24 6 2.1144 -3.5435 -4.5872 25 6 1.4069 -3.1179 -5.8754 26 6 1.9899 -3.8944 -7.0578 27 9 1.7018 -5.2554 -6.9096 28 9 1.4245 -3.4249 -8.2482 29 1 -0.3634 -1.0276 -0.0026 30 1 -0.3633 0.5116 0.8913 31 1 -0.3633 0.5162 -0.8887 32 1 3.0798 1.3443 -0.1083 33 1 1.5612 1.9273 -0.8309 34 1 2.5244 3.8009 0.8499 35 1 2.0494 6.7516 4.2317 36 1 3.0802 -0.6662 -1.1720 37 1 1.5657 -0.3832 -2.0634 38 1 3.3031 -2.2772 0.4177 39 1 1.7655 -2.9013 1.0998 40 1 3.6492 -4.6499 0.1955 41 1 1.9144 -4.9568 -0.1503 42 1 2.8406 -4.9292 -2.3709 43 1 4.0137 -3.6430 -1.9533 44 1 3.1801 -3.3307 -4.6712 45 1 1.9685 -4.6119 -4.4281 46 1 0.3410 -3.3304 -5.7917 47 1 1.5530 -2.0495 -6.0342 48 1 3.0702 -3.7528 -7.0881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328749637.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:27 Heat of formation + Delta-G solvation = -163.940768 kcal Electronic energy + Delta-G solvation = -30835.730211 eV Core-core repulsion = 26175.544896 eV Total energy + Delta-G solvation = -4660.185315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.38150 -47.39351 -40.63459 -38.77941 -37.94914 -36.18064 -34.28305 -33.87896 -31.94315 -31.66306 -30.58552 -27.95028 -27.50465 -26.35199 -24.65751 -23.67154 -22.49654 -21.97510 -20.71203 -19.39473 -19.16234 -18.23361 -18.07103 -17.83446 -17.44700 -16.91464 -16.23884 -15.93927 -15.73073 -15.30550 -15.10614 -14.84533 -14.58998 -14.32178 -14.14583 -13.91698 -13.75775 -13.60145 -13.48813 -13.29391 -13.16885 -12.97375 -12.74413 -12.61544 -12.48615 -12.38875 -11.96330 -11.83266 -11.69575 -11.47378 -11.37478 -11.35991 -11.33387 -11.01223 -10.94691 -10.77785 -10.58534 -10.15219 -9.96536 -9.52416 -8.99446 -8.51381 -8.16599 -7.91705 -6.29873 -3.81014 2.27735 2.51388 3.03308 3.07731 3.15677 3.35088 3.71844 3.76115 3.94119 3.99940 4.08194 4.11633 4.22539 4.27746 4.53890 4.57056 4.68539 4.76500 4.81721 4.83731 4.89202 5.09279 5.16425 5.22068 5.27915 5.30174 5.45152 5.49228 5.54284 5.59707 5.68106 5.70670 5.77254 5.85764 5.87968 5.96629 6.00763 6.10678 6.19387 6.56600 7.14103 7.21702 7.32172 7.60228 7.83072 8.16217 8.61975 8.96847 9.44134 9.85556 10.83300 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015452 B = 0.002051 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.596441 B =13649.796239 C =14801.046708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.512 5.512 3 C 0.044 3.956 4 C 0.455 3.545 5 O -0.558 6.558 6 N -0.592 5.592 7 C -0.303 4.303 8 H 0.120 0.880 9 C 0.040 3.960 10 N -0.882 5.882 11 Si 0.879 3.121 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.046 3.954 16 C 0.140 3.860 17 H 0.081 0.919 18 C -0.113 4.113 19 C -0.137 4.137 20 C 0.098 3.902 21 N -0.615 5.615 22 C 0.529 3.471 23 O -0.533 6.533 24 C -0.137 4.137 25 C -0.158 4.158 26 C 0.262 3.738 27 F -0.207 7.207 28 F -0.205 7.205 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.017 0.983 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.104 0.896 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.639 -22.465 -20.258 30.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.237 5.237 3 C -0.087 4.087 4 C 0.241 3.759 5 O -0.440 6.440 6 N -0.232 5.232 7 C -0.432 4.432 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.522 5.522 11 Si 0.706 3.294 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.083 4.083 16 C 0.037 3.963 17 H 0.099 0.901 18 C -0.151 4.151 19 C -0.175 4.175 20 C -0.025 4.025 21 N -0.350 5.350 22 C 0.317 3.683 23 O -0.410 6.410 24 C -0.177 4.177 25 C -0.196 4.196 26 C 0.209 3.791 27 F -0.188 7.188 28 F -0.186 7.186 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.035 0.965 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.202 0.798 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.115 0.885 47 H 0.122 0.878 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.840 -22.478 -19.315 30.207 hybrid contribution 0.593 1.255 -1.782 2.258 sum 6.433 -21.223 -21.097 30.609 Atomic orbital electron populations 1.22595 0.86542 1.01541 1.02082 1.61535 1.08891 1.12430 1.40806 1.21889 1.00614 0.89273 0.96950 1.19613 0.85023 0.82393 0.88911 1.90516 1.42594 1.64086 1.46788 1.42219 1.51007 1.12038 1.17936 1.19420 1.33605 0.96206 0.93923 0.86261 1.25037 0.97935 0.96522 0.96736 1.69623 1.45907 1.13536 1.23166 0.86677 0.80498 0.80534 0.81711 1.19688 1.20198 1.19513 1.22426 0.99937 0.93047 0.92933 1.21607 1.00137 0.90926 0.83621 0.90103 1.22586 1.01262 0.94211 0.97044 1.22802 1.02648 0.98091 0.93990 1.22340 0.92407 0.91097 0.96639 1.48609 1.43551 1.35625 1.07245 1.20087 0.82342 0.83164 0.82690 1.90756 1.29964 1.36054 1.84181 1.21561 1.01663 1.01985 0.92498 1.22431 1.03050 1.02356 0.91759 1.21934 0.98554 0.76095 0.82543 1.92990 1.95397 1.34670 1.95779 1.93003 1.87804 1.88325 1.49473 0.92152 0.88465 0.96459 0.89449 0.93389 0.79764 0.91656 0.91007 0.93858 0.89938 0.89328 0.89614 0.90666 0.90581 0.91082 0.88175 0.88038 0.88519 0.87771 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.02 60.06 0.54 0.88 16 2 N -0.51 -8.29 4.33 -244.37 -1.06 -9.35 16 3 C 0.04 0.76 5.45 -4.98 -0.03 0.74 16 4 C 0.45 10.35 7.51 -10.99 -0.08 10.27 16 5 O -0.56 -14.73 13.89 5.55 0.08 -14.65 16 6 N -0.59 -14.18 5.09 -10.97 -0.06 -14.23 16 7 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 9 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 10 N -0.88 -25.83 13.96 55.50 0.77 -25.06 16 11 Si 0.88 19.48 27.74 -169.99 -4.71 14.76 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 15 C 0.05 0.60 4.38 -3.82 -0.02 0.58 16 16 C 0.14 1.56 2.82 -66.96 -0.19 1.38 16 17 H 0.08 1.05 6.20 -51.93 -0.32 0.73 16 18 C -0.11 -1.06 6.32 -24.90 -0.16 -1.22 16 19 C -0.14 -0.85 7.07 -24.70 -0.17 -1.02 16 20 C 0.10 0.55 6.64 -2.65 -0.02 0.54 16 21 N -0.62 -5.58 3.07 -163.16 -0.50 -6.08 16 22 C 0.53 5.25 7.56 -10.98 -0.08 5.16 16 23 O -0.53 -7.54 15.15 5.56 0.08 -7.46 16 24 C -0.14 -0.77 4.72 -27.88 -0.13 -0.90 16 25 C -0.16 -1.01 4.73 -26.73 -0.13 -1.14 16 26 C 0.26 1.47 5.29 37.16 0.20 1.67 16 27 F -0.21 -1.53 17.02 2.25 0.04 -1.49 16 28 F -0.20 -1.70 17.34 2.25 0.04 -1.67 16 29 H 0.06 0.90 6.16 -51.93 -0.32 0.58 16 30 H 0.10 1.93 5.88 -51.93 -0.31 1.63 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 1.31 7.94 -51.92 -0.41 0.90 16 33 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 34 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.07 0.86 7.78 -51.93 -0.40 0.46 16 37 H 0.04 0.64 6.84 -51.93 -0.36 0.28 16 38 H 0.08 0.82 7.75 -51.93 -0.40 0.42 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.28 7.51 -51.92 -0.39 -0.11 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 0.44 7.55 -51.93 -0.39 0.05 16 46 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 47 H 0.10 0.71 8.10 -51.93 -0.42 0.29 16 48 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 391.85 15.07 5.91 5.91 Total: -1.00 -35.15 391.85 -7.24 -42.39 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.32 Total: 7.70 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -0.51 Total: 9.23 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.84 Total: -54.72 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: 0.16 Total: -22.11 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.16 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.15 -7.24 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328749637.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.548 kcal (2) G-P(sol) polarization free energy of solvation -35.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds