Wall clock time and date at job start Wed Apr 1 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46891 * 111.00281 * 2 1 4 4 C 1.50695 * 109.47186 * 66.04760 * 3 2 1 5 5 O 1.21286 * 120.00258 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00203 * 179.97438 * 4 3 2 7 7 C 1.37102 * 120.00342 * 180.02562 * 6 4 3 8 8 H 1.07998 * 119.99833 * 359.97438 * 7 6 4 9 9 C 1.38948 * 120.00142 * 180.02562 * 7 6 4 10 10 N 1.31418 * 119.99861 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00186 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46789 * 90.00223 * 11 9 7 13 13 H 1.48499 * 109.47253 * 210.00152 * 11 9 7 14 14 H 1.48497 * 109.46941 * 330.00257 * 11 9 7 15 15 C 1.46908 * 110.99842 * 236.04672 * 2 1 3 16 16 C 1.53005 * 109.46994 * 294.30374 * 15 2 1 17 17 H 1.09003 * 109.99833 * 52.56697 * 16 15 2 18 18 C 1.54319 * 109.88217 * 291.47250 * 16 15 2 19 19 C 1.55155 * 102.94456 * 218.39176 * 18 16 15 20 20 C 1.54690 * 101.67469 * 35.33083 * 19 18 16 21 21 N 1.47015 * 109.88189 * 173.66363 * 16 15 2 22 22 C 1.34787 * 125.64976 * 298.31995 * 21 16 15 23 23 O 1.21281 * 119.99590 * 354.97497 * 22 21 16 24 24 C 1.50697 * 119.99606 * 174.70144 * 22 21 16 25 25 C 1.53010 * 109.46618 * 180.02562 * 24 22 21 26 26 C 1.52998 * 109.46843 * 180.02562 * 25 24 22 27 27 F 1.39898 * 109.47380 * 65.00020 * 26 25 24 28 28 F 1.39900 * 109.46877 * 185.00207 * 26 25 24 29 29 H 1.08998 * 109.47757 * 179.85439 * 1 2 3 30 30 H 1.09003 * 109.47014 * 299.85248 * 1 2 3 31 31 H 1.09003 * 109.46988 * 59.84930 * 1 2 3 32 32 H 1.09008 * 109.47295 * 186.04765 * 3 2 1 33 33 H 1.09002 * 109.47182 * 306.04415 * 3 2 1 34 34 H 0.97007 * 119.99924 * 0.02562 * 6 4 3 35 35 H 0.96993 * 119.99478 * 180.02562 * 10 9 7 36 36 H 1.08994 * 109.47108 * 174.30352 * 15 2 1 37 37 H 1.09003 * 109.46787 * 54.30025 * 15 2 1 38 38 H 1.09005 * 110.72372 * 336.75329 * 18 16 15 39 39 H 1.08997 * 110.72177 * 100.02493 * 18 16 15 40 40 H 1.08992 * 111.00989 * 153.57353 * 19 18 16 41 41 H 1.09006 * 110.99999 * 277.39149 * 19 18 16 42 42 H 1.09007 * 110.39331 * 204.36325 * 20 19 18 43 43 H 1.09000 * 110.23373 * 82.11609 * 20 19 18 44 44 H 1.09000 * 109.47517 * 299.99445 * 24 22 21 45 45 H 1.08997 * 109.47221 * 60.00503 * 24 22 21 46 46 H 1.09000 * 109.46634 * 299.99876 * 25 24 22 47 47 H 1.08999 * 109.46876 * 59.99729 * 25 24 22 48 48 H 1.09001 * 109.46707 * 304.99667 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 8 1.0055 1.4453 2.1411 6 7 2.0190 3.3197 1.5237 7 6 1.6934 3.9343 2.7052 8 1 1.1304 3.3987 3.4552 9 6 2.0868 5.2466 2.9372 10 7 1.7751 5.8355 4.0700 11 14 3.0600 6.1732 1.6397 12 1 2.1233 6.8774 0.7275 13 1 3.9468 7.1645 2.3001 14 1 3.8834 5.2145 0.8600 15 6 1.9954 -0.7660 -1.1377 16 6 1.6239 -2.2413 -0.9748 17 1 0.5512 -2.3393 -0.8076 18 6 2.3980 -2.8493 0.2137 19 6 2.7509 -4.2727 -0.2931 20 6 3.0014 -4.0160 -1.7979 21 7 2.0128 -2.9907 -2.1783 22 6 1.5396 -2.7792 -3.4225 23 8 0.6548 -1.9701 -3.6053 24 6 2.1144 -3.5435 -4.5872 25 6 1.4069 -3.1179 -5.8754 26 6 1.9899 -3.8944 -7.0578 27 9 1.7018 -5.2554 -6.9096 28 9 1.4245 -3.4249 -8.2482 29 1 -0.3634 -1.0276 -0.0026 30 1 -0.3633 0.5116 0.8913 31 1 -0.3633 0.5162 -0.8887 32 1 3.0798 1.3443 -0.1083 33 1 1.5612 1.9273 -0.8309 34 1 2.5244 3.8009 0.8499 35 1 2.0494 6.7516 4.2317 36 1 3.0802 -0.6662 -1.1720 37 1 1.5657 -0.3832 -2.0634 38 1 3.3031 -2.2772 0.4177 39 1 1.7655 -2.9013 1.0998 40 1 3.6492 -4.6499 0.1955 41 1 1.9144 -4.9568 -0.1503 42 1 2.8406 -4.9292 -2.3709 43 1 4.0137 -3.6430 -1.9533 44 1 3.1801 -3.3307 -4.6712 45 1 1.9685 -4.6119 -4.4281 46 1 0.3410 -3.3304 -5.7917 47 1 1.5530 -2.0495 -6.0342 48 1 3.0702 -3.7528 -7.0881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328749637.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:24 Heat of formation + Delta-G solvation = -190.134979 kcal Electronic energy + Delta-G solvation = -30836.866077 eV Core-core repulsion = 26175.544896 eV Total energy + Delta-G solvation = -4661.321181 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -49.87459 -47.90634 -41.40445 -40.45165 -38.89613 -37.45363 -35.90218 -34.82049 -33.75628 -32.62358 -31.51183 -29.42175 -28.04845 -27.50891 -26.30056 -24.52050 -23.23258 -22.82884 -21.50399 -21.26325 -20.25071 -19.86008 -18.52214 -18.47837 -18.09209 -17.92018 -17.28003 -16.90971 -16.77002 -16.58914 -16.37232 -15.90210 -15.83106 -15.39227 -15.25685 -14.89566 -14.83206 -14.49587 -14.39717 -14.31089 -14.24443 -14.08391 -13.81321 -13.70471 -13.38766 -13.19419 -13.13546 -13.04078 -12.80554 -12.64597 -12.40643 -12.39448 -12.25047 -12.00706 -11.98669 -11.80583 -11.79608 -11.53674 -11.47425 -10.93924 -10.41208 -10.23602 -9.68293 -9.27897 -8.41151 -6.01632 1.29440 1.34778 1.43583 1.57506 1.83531 1.94793 2.22548 2.62364 2.93237 3.14483 3.22770 3.35294 3.50628 3.58113 3.66551 3.71373 3.85596 3.97106 4.08253 4.19055 4.26173 4.27067 4.32064 4.33026 4.37421 4.42465 4.51789 4.53793 4.59586 4.68716 4.75744 4.83317 4.88728 5.02091 5.04452 5.08094 5.13690 5.19754 5.35956 5.44414 5.52782 5.84582 5.96368 6.07606 6.54174 6.59703 6.88465 7.12510 7.39572 7.96580 8.76391 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015452 B = 0.002051 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.596441 B =13649.796239 C =14801.046708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.523 5.523 3 C 0.055 3.945 4 C 0.454 3.546 5 O -0.602 6.602 6 N -0.593 5.593 7 C -0.325 4.325 8 H 0.057 0.943 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.963 3.037 12 H -0.260 1.260 13 H -0.274 1.274 14 H -0.231 1.231 15 C 0.055 3.945 16 C 0.140 3.860 17 H 0.053 0.947 18 C -0.113 4.113 19 C -0.129 4.129 20 C 0.096 3.904 21 N -0.614 5.614 22 C 0.520 3.480 23 O -0.586 6.586 24 C -0.125 4.125 25 C -0.156 4.156 26 C 0.262 3.738 27 F -0.217 7.217 28 F -0.223 7.223 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.388 0.612 35 H 0.279 0.721 36 H 0.092 0.908 37 H 0.028 0.972 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.138 0.862 45 H 0.121 0.879 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.358 -23.830 -23.574 35.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.248 5.248 3 C -0.077 4.077 4 C 0.242 3.758 5 O -0.485 6.485 6 N -0.235 5.235 7 C -0.454 4.454 8 H 0.075 0.925 9 C -0.215 4.215 10 N -0.575 5.575 11 Si 0.783 3.217 12 H -0.185 1.185 13 H -0.199 1.199 14 H -0.154 1.154 15 C -0.073 4.073 16 C 0.036 3.964 17 H 0.072 0.928 18 C -0.151 4.151 19 C -0.167 4.167 20 C -0.025 4.025 21 N -0.347 5.347 22 C 0.311 3.689 23 O -0.467 6.467 24 C -0.165 4.165 25 C -0.194 4.194 26 C 0.209 3.791 27 F -0.199 7.199 28 F -0.205 7.205 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.141 0.859 33 H 0.086 0.914 34 H 0.224 0.776 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.155 0.845 45 H 0.139 0.861 46 H 0.088 0.912 47 H 0.115 0.885 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.587 -23.900 -22.646 34.293 hybrid contribution -0.679 1.582 -0.636 1.835 sum 8.907 -22.318 -23.282 33.459 Atomic orbital electron populations 1.22392 0.87479 1.01806 1.00128 1.61492 1.08231 1.12255 1.42810 1.21835 1.02804 0.89482 0.93552 1.20742 0.83005 0.81806 0.90266 1.90509 1.44006 1.65080 1.48947 1.42039 1.51798 1.12603 1.17024 1.18990 1.34626 0.96978 0.94819 0.92524 1.26100 0.98738 0.96987 0.99626 1.69804 1.47349 1.14313 1.26025 0.85384 0.78915 0.79103 0.78251 1.18499 1.19874 1.15397 1.22422 1.00636 0.93549 0.90696 1.21447 0.98956 0.90427 0.85608 0.92844 1.22516 1.00410 0.96541 0.95620 1.22806 1.03570 0.95714 0.94592 1.22633 0.92404 0.91289 0.96218 1.48710 1.43875 1.35800 1.06358 1.20917 0.81588 0.82712 0.83705 1.90736 1.32379 1.38562 1.85007 1.21586 1.03135 1.02128 0.89617 1.22365 1.01845 1.02221 0.93005 1.22303 1.00562 0.75081 0.81153 1.92968 1.95643 1.35508 1.95750 1.92966 1.88367 1.88551 1.50612 0.90967 0.92148 0.96396 0.85919 0.91372 0.77616 0.91177 0.89019 0.95349 0.90076 0.91267 0.87443 0.90788 0.87790 0.88865 0.84460 0.86118 0.91157 0.88459 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 9.02 127.69 1.15 2.20 16 2 N -0.52 -16.69 4.33 -927.04 -4.02 -20.70 16 3 C 0.05 1.78 5.45 85.56 0.47 2.25 16 4 C 0.45 20.89 7.51 87.66 0.66 21.55 16 5 O -0.60 -33.39 13.89 -3.05 -0.04 -33.43 16 6 N -0.59 -28.36 5.09 -307.00 -1.56 -29.92 16 7 C -0.32 -19.17 10.16 84.04 0.85 -18.31 16 8 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16 9 C -0.02 -0.90 5.50 84.92 0.47 -0.43 16 10 N -0.93 -56.65 13.96 21.66 0.30 -56.35 16 11 Si 0.96 39.16 27.74 68.60 1.90 41.06 16 12 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 13 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 14 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 15 C 0.06 1.37 4.38 86.30 0.38 1.75 16 16 C 0.14 2.99 2.82 45.34 0.13 3.11 16 17 H 0.05 1.43 6.20 -2.39 -0.01 1.41 16 18 C -0.11 -1.96 6.32 31.78 0.20 -1.76 16 19 C -0.13 -1.20 7.07 31.91 0.23 -0.97 16 20 C 0.10 0.67 6.64 86.78 0.58 1.24 16 21 N -0.61 -9.62 3.07 -788.49 -2.42 -12.04 16 22 C 0.52 9.35 7.56 87.65 0.66 10.01 16 23 O -0.59 -16.61 15.15 -3.03 -0.05 -16.65 16 24 C -0.13 -0.97 4.72 29.85 0.14 -0.83 16 25 C -0.16 -1.74 4.73 30.60 0.14 -1.60 16 26 C 0.26 2.25 5.29 71.98 0.38 2.63 16 27 F -0.22 -2.69 17.02 44.97 0.77 -1.92 16 28 F -0.22 -3.42 17.34 44.97 0.78 -2.64 16 29 H 0.07 2.28 6.16 -2.39 -0.01 2.26 16 30 H 0.06 2.55 5.88 -2.39 -0.01 2.54 16 31 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.12 3.21 7.94 -2.38 -0.02 3.19 16 33 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 34 H 0.39 15.47 5.76 -92.70 -0.53 14.94 16 35 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.09 1.90 7.78 -2.39 -0.02 1.88 16 37 H 0.03 0.80 6.84 -2.39 -0.02 0.79 16 38 H 0.08 1.44 7.75 -2.38 -0.02 1.42 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.07 0.72 8.14 -2.38 -0.02 0.71 16 42 H 0.10 0.21 7.51 -2.38 -0.02 0.20 16 43 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.12 0.53 7.55 -2.39 -0.02 0.51 16 46 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 47 H 0.10 1.23 8.10 -2.39 -0.02 1.21 16 48 H 0.16 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: -1.00 -85.46 391.85 2.49 -82.97 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.39 Total: 28.79 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 6.43 Total: 20.84 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -7.70 Total: -119.02 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -0.09 Total: -50.09 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 1.54 Total: -4.56 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.90 Total: 41.06 kcal Total: -85.46 2.49 -82.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328749637.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.163 kcal (2) G-P(sol) polarization free energy of solvation -85.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds