Wall clock time and date at job start Wed Apr 1 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00632 * 2 1 4 4 C 1.38411 * 119.99806 * 179.97438 * 2 1 3 5 5 N 1.32515 * 119.21636 * 0.02562 * 4 2 1 6 6 C 1.32260 * 120.74024 * 180.02562 * 5 4 2 7 7 C 1.38626 * 119.19566 * 0.02562 * 6 5 4 8 8 C 1.38588 * 118.55798 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.39765 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47268 * 94.99950 * 9 8 7 11 11 C 1.34772 * 120.00159 * 179.97438 * 10 9 8 12 12 O 1.21352 * 120.00064 * 0.02562 * 11 10 9 13 13 C 1.49454 * 120.00405 * 180.02562 * 11 10 9 14 14 O 1.21350 * 119.99305 * 354.49244 * 13 11 10 15 15 N 1.34774 * 120.00256 * 174.49104 * 13 11 10 16 16 C 1.46497 * 120.00048 * 185.59480 * 15 13 11 17 17 C 1.52996 * 109.47108 * 185.19403 * 16 15 13 18 18 C 1.50699 * 115.54797 * 57.83876 * 17 16 15 19 19 H 1.07999 * 120.00144 * 264.64997 * 18 17 16 20 20 C 1.37874 * 120.00002 * 84.65644 * 18 17 16 21 21 N 1.31511 * 120.00567 * 1.96570 * 20 18 17 22 22 Si 1.86812 * 119.99796 * 181.96940 * 20 18 17 23 23 H 1.48497 * 109.47110 * 89.99555 * 22 20 18 24 24 H 1.48499 * 109.46987 * 209.99777 * 22 20 18 25 25 H 1.48499 * 109.46964 * 329.99514 * 22 20 18 26 26 C 1.53002 * 117.49950 * 272.16773 * 17 16 15 27 27 C 1.52999 * 117.49633 * 203.50582 * 17 16 15 28 28 N 1.32283 * 119.19639 * 359.73145 * 8 7 6 29 29 H 1.09004 * 109.46722 * 90.00036 * 1 2 3 30 30 H 1.09000 * 109.46894 * 330.00244 * 1 2 3 31 31 H 1.08993 * 109.47584 * 210.00370 * 1 2 3 32 32 H 1.09000 * 109.47203 * 89.99118 * 3 2 1 33 33 H 1.08995 * 109.46902 * 209.99918 * 3 2 1 34 34 H 1.09001 * 109.46547 * 329.99848 * 3 2 1 35 35 H 1.07991 * 120.40162 * 179.97438 * 6 5 4 36 36 H 1.07994 * 120.72250 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.46724 * 215.00126 * 9 8 7 38 38 H 1.08998 * 109.47035 * 334.99789 * 9 8 7 39 39 H 0.97003 * 119.99862 * 0.02562 * 10 9 8 40 40 H 0.97003 * 119.99716 * 5.59076 * 15 13 11 41 41 H 1.08998 * 109.46791 * 305.19786 * 16 15 13 42 42 H 1.08998 * 109.46901 * 65.19420 * 16 15 13 43 43 H 0.96998 * 120.00426 * 185.02159 * 21 20 18 44 44 H 1.08992 * 117.49744 * 359.97438 * 26 17 16 45 45 H 1.08997 * 117.49836 * 145.02090 * 26 17 16 46 46 H 1.09013 * 117.49585 * 214.97532 * 27 17 16 47 47 H 1.08996 * 117.50262 * 359.97411 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1570 -1.1987 0.0005 5 7 1.4787 -2.3371 0.0005 6 6 2.1093 -3.4997 0.0015 7 6 3.4955 -3.5172 0.0032 8 6 4.1732 -2.3083 0.0031 9 6 5.6800 -2.2789 0.0043 10 7 6.1670 -2.1497 -1.3714 11 6 7.4915 -2.1020 -1.6157 12 8 8.2808 -2.1665 -0.6962 13 6 7.9884 -1.9696 -3.0190 14 8 7.2056 -2.0055 -3.9455 15 7 9.3056 -1.8102 -3.2553 16 6 9.7800 -1.5579 -4.6181 17 6 11.3099 -1.5453 -4.6314 18 6 11.9745 -2.8023 -4.1322 19 1 12.2957 -2.8712 -3.1033 20 6 12.1728 -3.8642 -4.9889 21 7 11.8172 -3.7661 -6.2512 22 14 12.9467 -5.4425 -4.3565 23 1 11.8816 -6.3555 -3.8695 24 1 13.6982 -6.1002 -5.4556 25 1 13.8755 -5.1263 -3.2419 26 6 12.0080 -0.2146 -4.3432 27 6 12.0002 -0.7832 -5.7644 28 7 3.4816 -1.1807 -0.0039 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3634 -0.8899 0.5138 32 1 2.3792 1.5834 1.0277 33 1 3.1500 1.1382 -0.5138 34 1 1.6085 2.0283 -0.5139 35 1 1.5511 -4.4242 0.0019 36 1 4.0354 -4.4524 0.0036 37 1 6.0263 -1.4299 0.5936 38 1 6.0611 -3.2028 0.4393 39 1 5.5361 -2.0977 -2.1063 40 1 9.9395 -1.8625 -2.5229 41 1 9.4173 -2.3439 -5.2804 42 1 9.4058 -0.5930 -4.9603 43 1 11.8889 -4.5362 -6.8366 44 1 11.3773 0.6518 -4.1445 45 1 12.9482 -0.2484 -3.7928 46 1 12.9355 -1.1909 -6.1484 47 1 11.3645 -0.2913 -6.5006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329551167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:33 Heat of formation + Delta-G solvation = 25.173316 kcal Electronic energy + Delta-G solvation = -29390.440030 eV Core-core repulsion = 25189.144503 eV Total energy + Delta-G solvation = -4201.295527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.39081 -40.20747 -38.25255 -37.20669 -36.71762 -35.54165 -33.81065 -33.18215 -31.97896 -31.66940 -28.85757 -27.94767 -26.75118 -26.12474 -25.40632 -23.73884 -22.74842 -21.77121 -21.16757 -20.00620 -19.54768 -18.32518 -18.05406 -17.38553 -16.67633 -16.11047 -16.00217 -15.86600 -15.67305 -15.25004 -14.92951 -14.81590 -14.65842 -14.43131 -14.10365 -14.10144 -13.82750 -13.18161 -13.11303 -12.94693 -12.79728 -12.67740 -12.59482 -12.32788 -11.91045 -11.61777 -11.39031 -11.28224 -11.03468 -10.98909 -10.92254 -10.58210 -10.53054 -10.25944 -9.63991 -9.45758 -9.32108 -9.22650 -9.07803 -8.52905 -8.42592 -8.25185 -8.12602 -6.09358 -4.18366 0.67313 0.88790 1.77436 2.29449 2.68217 3.27595 3.34875 3.37476 3.56387 3.59451 3.66848 4.07300 4.08852 4.27917 4.36448 4.73222 4.84269 4.91082 4.92331 4.95128 5.03217 5.15999 5.19719 5.28204 5.32615 5.36561 5.41931 5.46898 5.50633 5.92618 5.96417 6.10401 6.26944 6.40049 6.41936 6.45131 6.54843 6.67135 6.75193 6.99270 7.05712 7.07667 7.16937 7.33767 7.48064 7.80589 7.81418 7.93459 8.13875 8.30742 8.54618 8.83790 9.49558 10.98680 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.002064 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.885919 B =13560.548417 C =14391.661908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.593 5.593 3 C 0.101 3.899 4 C 0.562 3.438 5 N -0.566 5.566 6 C 0.194 3.806 7 C -0.272 4.272 8 C 0.202 3.798 9 C 0.171 3.829 10 N -0.701 5.701 11 C 0.513 3.487 12 O -0.516 6.516 13 C 0.497 3.503 14 O -0.539 6.539 15 N -0.663 5.663 16 C 0.159 3.841 17 C 0.021 3.979 18 C -0.499 4.499 19 H 0.062 0.938 20 C 0.074 3.926 21 N -0.875 5.875 22 Si 0.890 3.110 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.211 4.211 27 C -0.142 4.142 28 N -0.553 5.553 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.171 0.829 36 H 0.149 0.851 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.413 0.587 40 H 0.414 0.586 41 H 0.078 0.922 42 H 0.043 0.957 43 H 0.261 0.739 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.233 5.216 13.113 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.310 5.310 3 C -0.042 4.042 4 C 0.207 3.793 5 N -0.288 5.288 6 C 0.026 3.974 7 C -0.298 4.298 8 C 0.053 3.947 9 C 0.047 3.953 10 N -0.356 5.356 11 C 0.294 3.706 12 O -0.391 6.391 13 C 0.276 3.724 14 O -0.418 6.418 15 N -0.312 5.312 16 C 0.037 3.963 17 C 0.021 3.979 18 C -0.536 4.536 19 H 0.080 0.920 20 C -0.131 4.131 21 N -0.511 5.511 22 Si 0.717 3.283 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.248 4.248 27 C -0.180 4.180 28 N -0.276 5.276 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.188 0.812 36 H 0.166 0.834 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.249 0.751 40 H 0.250 0.750 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.728 6.171 12.907 26.015 hybrid contribution 0.720 -1.754 0.209 1.907 sum -21.008 4.417 13.117 25.158 Atomic orbital electron populations 1.21632 0.77451 1.03132 1.01793 1.45892 1.05847 1.01998 1.77265 1.21664 0.97771 0.82974 1.01794 1.19210 0.84988 0.86421 0.88710 1.67899 1.41037 0.98000 1.21899 1.22972 0.91645 0.95270 0.87469 1.22478 0.96592 1.00094 1.10628 1.21238 0.95814 0.87962 0.89677 1.20203 0.86138 1.04545 0.84429 1.45563 1.07138 1.73992 1.08876 1.20502 0.82539 0.77167 0.90387 1.90763 1.54973 1.47550 1.45793 1.19814 0.84332 0.79880 0.88359 1.90724 1.55611 1.50686 1.44762 1.45812 1.05716 1.66782 1.12917 1.21172 0.95524 0.99110 0.80540 1.19033 0.88493 0.90612 0.99792 1.20365 1.39265 0.97634 0.96356 0.92001 1.24983 0.94917 0.98625 0.94526 1.69983 1.47137 1.29897 1.04107 0.86626 0.79529 0.83572 0.78555 1.20585 1.21230 1.19728 1.23066 1.02667 0.97965 1.01080 1.22479 1.02666 1.03045 0.89781 1.67664 1.06905 1.31581 1.21473 0.92937 0.91280 0.90152 0.92928 0.89899 0.91210 0.81225 0.83358 0.88844 0.88618 0.75066 0.74965 0.90347 0.93904 0.92867 0.91583 0.90197 0.89478 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 10.44 59.85 0.62 1.29 16 2 N -0.59 -5.45 3.37 -191.90 -0.65 -6.09 16 3 C 0.10 0.75 10.44 59.85 0.62 1.37 16 4 C 0.56 6.30 8.17 -322.80 -2.64 3.66 16 5 N -0.57 -5.89 9.11 -13.93 -0.13 -6.02 16 6 C 0.19 1.60 11.30 -17.22 -0.19 1.40 16 7 C -0.27 -2.29 9.83 -39.31 -0.39 -2.67 16 8 C 0.20 2.08 6.19 -82.27 -0.51 1.57 16 9 C 0.17 1.81 6.03 -5.19 -0.03 1.78 16 10 N -0.70 -9.08 5.54 -61.91 -0.34 -9.43 16 11 C 0.51 8.33 7.89 -11.59 -0.09 8.24 16 12 O -0.52 -9.21 16.49 5.49 0.09 -9.12 16 13 C 0.50 9.41 7.88 -11.58 -0.09 9.32 16 14 O -0.54 -11.18 16.46 5.50 0.09 -11.09 16 15 N -0.66 -13.30 5.37 -60.73 -0.33 -13.62 16 16 C 0.16 3.52 5.57 -4.05 -0.02 3.49 16 17 C 0.02 0.50 1.51 -155.66 -0.23 0.27 16 18 C -0.50 -12.85 8.38 -34.44 -0.29 -13.14 16 19 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 20 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 21 N -0.88 -24.09 12.72 55.43 0.71 -23.39 16 22 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.21 -4.35 9.94 -26.69 -0.27 -4.61 16 27 C -0.14 -3.18 9.26 -26.69 -0.25 -3.43 16 28 N -0.55 -6.40 9.05 -10.15 -0.09 -6.49 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 31 H 0.08 0.57 7.33 -51.93 -0.38 0.19 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.74 7.33 -51.93 -0.38 0.36 16 34 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 35 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.10 0.90 8.06 -51.93 -0.42 0.48 16 39 H 0.41 5.31 7.95 -40.82 -0.32 4.98 16 40 H 0.41 8.17 7.73 -40.82 -0.32 7.85 16 41 H 0.08 1.96 8.09 -51.93 -0.42 1.54 16 42 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 43 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 46 H 0.09 2.10 8.14 -51.92 -0.42 1.68 16 47 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 407.21 15.07 6.14 6.14 Total: -1.00 -31.62 407.21 -10.23 -41.85 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -6.85 Total: 11.14 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: -3.85 Total: 10.40 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -0.83 Total: -65.04 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.18 Total: -20.21 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.62 -10.23 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329551167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.020 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds