Wall clock time and date at job start Wed Apr 1 2020 05:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00632 * 2 1 4 4 C 1.38411 * 119.99806 * 179.97438 * 2 1 3 5 5 N 1.32515 * 119.21636 * 0.02562 * 4 2 1 6 6 C 1.32260 * 120.74024 * 180.02562 * 5 4 2 7 7 C 1.38626 * 119.19566 * 0.02562 * 6 5 4 8 8 C 1.38588 * 118.55798 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.39765 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47268 * 94.99950 * 9 8 7 11 11 C 1.34772 * 120.00159 * 179.97438 * 10 9 8 12 12 O 1.21352 * 120.00064 * 0.02562 * 11 10 9 13 13 C 1.49454 * 120.00405 * 180.02562 * 11 10 9 14 14 O 1.21350 * 119.99305 * 354.49244 * 13 11 10 15 15 N 1.34774 * 120.00256 * 174.49104 * 13 11 10 16 16 C 1.46497 * 120.00048 * 185.59480 * 15 13 11 17 17 C 1.52996 * 109.47108 * 185.19403 * 16 15 13 18 18 C 1.50699 * 115.54797 * 57.83876 * 17 16 15 19 19 H 1.07999 * 120.00144 * 264.64997 * 18 17 16 20 20 C 1.37874 * 120.00002 * 84.65644 * 18 17 16 21 21 N 1.31511 * 120.00567 * 1.96570 * 20 18 17 22 22 Si 1.86812 * 119.99796 * 181.96940 * 20 18 17 23 23 H 1.48497 * 109.47110 * 89.99555 * 22 20 18 24 24 H 1.48499 * 109.46987 * 209.99777 * 22 20 18 25 25 H 1.48499 * 109.46964 * 329.99514 * 22 20 18 26 26 C 1.53002 * 117.49950 * 272.16773 * 17 16 15 27 27 C 1.52999 * 117.49633 * 203.50582 * 17 16 15 28 28 N 1.32283 * 119.19639 * 359.73145 * 8 7 6 29 29 H 1.09004 * 109.46722 * 90.00036 * 1 2 3 30 30 H 1.09000 * 109.46894 * 330.00244 * 1 2 3 31 31 H 1.08993 * 109.47584 * 210.00370 * 1 2 3 32 32 H 1.09000 * 109.47203 * 89.99118 * 3 2 1 33 33 H 1.08995 * 109.46902 * 209.99918 * 3 2 1 34 34 H 1.09001 * 109.46547 * 329.99848 * 3 2 1 35 35 H 1.07991 * 120.40162 * 179.97438 * 6 5 4 36 36 H 1.07994 * 120.72250 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.46724 * 215.00126 * 9 8 7 38 38 H 1.08998 * 109.47035 * 334.99789 * 9 8 7 39 39 H 0.97003 * 119.99862 * 0.02562 * 10 9 8 40 40 H 0.97003 * 119.99716 * 5.59076 * 15 13 11 41 41 H 1.08998 * 109.46791 * 305.19786 * 16 15 13 42 42 H 1.08998 * 109.46901 * 65.19420 * 16 15 13 43 43 H 0.96998 * 120.00426 * 185.02159 * 21 20 18 44 44 H 1.08992 * 117.49744 * 359.97438 * 26 17 16 45 45 H 1.08997 * 117.49836 * 145.02090 * 26 17 16 46 46 H 1.09013 * 117.49585 * 214.97532 * 27 17 16 47 47 H 1.08996 * 117.50262 * 359.97411 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1570 -1.1987 0.0005 5 7 1.4787 -2.3371 0.0005 6 6 2.1093 -3.4997 0.0015 7 6 3.4955 -3.5172 0.0032 8 6 4.1732 -2.3083 0.0031 9 6 5.6800 -2.2789 0.0043 10 7 6.1670 -2.1497 -1.3714 11 6 7.4915 -2.1020 -1.6157 12 8 8.2808 -2.1665 -0.6962 13 6 7.9884 -1.9696 -3.0190 14 8 7.2056 -2.0055 -3.9455 15 7 9.3056 -1.8102 -3.2553 16 6 9.7800 -1.5579 -4.6181 17 6 11.3099 -1.5453 -4.6314 18 6 11.9745 -2.8023 -4.1322 19 1 12.2957 -2.8712 -3.1033 20 6 12.1728 -3.8642 -4.9889 21 7 11.8172 -3.7661 -6.2512 22 14 12.9467 -5.4425 -4.3565 23 1 11.8816 -6.3555 -3.8695 24 1 13.6982 -6.1002 -5.4556 25 1 13.8755 -5.1263 -3.2419 26 6 12.0080 -0.2146 -4.3432 27 6 12.0002 -0.7832 -5.7644 28 7 3.4816 -1.1807 -0.0039 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3634 -0.8899 0.5138 32 1 2.3792 1.5834 1.0277 33 1 3.1500 1.1382 -0.5138 34 1 1.6085 2.0283 -0.5139 35 1 1.5511 -4.4242 0.0019 36 1 4.0354 -4.4524 0.0036 37 1 6.0263 -1.4299 0.5936 38 1 6.0611 -3.2028 0.4393 39 1 5.5361 -2.0977 -2.1063 40 1 9.9395 -1.8625 -2.5229 41 1 9.4173 -2.3439 -5.2804 42 1 9.4058 -0.5930 -4.9603 43 1 11.8889 -4.5362 -6.8366 44 1 11.3773 0.6518 -4.1445 45 1 12.9482 -0.2484 -3.7928 46 1 12.9355 -1.1909 -6.1484 47 1 11.3645 -0.2913 -6.5006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329551167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:31 Heat of formation + Delta-G solvation = 5.181427 kcal Electronic energy + Delta-G solvation = -29391.306943 eV Core-core repulsion = 25189.144503 eV Total energy + Delta-G solvation = -4202.162440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.13936 -41.56807 -39.71136 -38.46011 -37.90015 -36.54329 -35.10104 -34.36065 -33.96307 -32.41165 -29.62240 -28.94872 -28.17997 -27.31329 -26.75254 -24.84688 -23.70368 -22.90963 -22.53523 -21.45299 -21.23846 -19.74537 -18.76040 -18.33108 -17.97213 -17.82902 -17.06630 -16.84348 -16.64633 -16.53431 -16.37946 -16.14096 -15.74970 -15.49670 -15.35012 -15.12897 -14.79641 -14.64913 -14.44415 -14.03600 -13.83132 -13.61361 -13.47182 -13.45176 -13.16827 -12.93593 -12.86885 -12.84178 -12.79259 -12.36748 -12.00794 -11.96841 -11.82409 -11.43515 -11.25364 -10.97727 -10.74666 -10.44397 -10.41819 -10.19127 -10.14470 -9.88776 -8.89361 -8.10777 -6.23434 -0.08236 0.21704 0.36475 1.40304 1.41704 1.44518 1.52320 1.69737 2.15702 2.42512 2.63550 2.89371 2.97044 3.18060 3.41872 3.45791 3.59996 3.60295 4.08423 4.21899 4.27847 4.32731 4.40238 4.47988 4.51756 4.52444 4.55344 4.64429 4.68177 4.75648 4.78451 4.92291 4.93278 4.93851 4.99109 5.03631 5.29425 5.32070 5.36508 5.54821 5.68164 5.77402 5.84189 5.85891 5.92109 6.35964 6.37771 6.41138 6.72380 6.83703 7.00403 7.22743 7.46353 8.96725 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.002064 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.885919 B =13560.548417 C =14391.661908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.600 5.600 3 C 0.102 3.898 4 C 0.541 3.459 5 N -0.578 5.578 6 C 0.193 3.807 7 C -0.266 4.266 8 C 0.186 3.814 9 C 0.174 3.826 10 N -0.683 5.683 11 C 0.522 3.478 12 O -0.533 6.533 13 C 0.496 3.504 14 O -0.559 6.559 15 N -0.665 5.665 16 C 0.173 3.827 17 C -0.004 4.004 18 C -0.503 4.503 19 H 0.059 0.941 20 C 0.027 3.973 21 N -0.904 5.904 22 Si 0.944 3.056 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.266 1.266 26 C -0.180 4.180 27 C -0.149 4.149 28 N -0.575 5.575 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.206 0.794 36 H 0.172 0.828 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.415 0.585 40 H 0.416 0.584 41 H 0.042 0.958 42 H 0.056 0.944 43 H 0.259 0.741 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.375 5.186 14.608 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.317 5.317 3 C -0.041 4.041 4 C 0.185 3.815 5 N -0.301 5.301 6 C 0.025 3.975 7 C -0.292 4.292 8 C 0.039 3.961 9 C 0.051 3.949 10 N -0.337 5.337 11 C 0.302 3.698 12 O -0.409 6.409 13 C 0.277 3.723 14 O -0.439 6.439 15 N -0.315 5.315 16 C 0.050 3.950 17 C -0.005 4.005 18 C -0.541 4.541 19 H 0.077 0.923 20 C -0.174 4.174 21 N -0.541 5.541 22 Si 0.771 3.229 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.190 1.190 26 C -0.218 4.218 27 C -0.187 4.187 28 N -0.299 5.299 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.222 0.778 36 H 0.190 0.810 37 H 0.108 0.892 38 H 0.131 0.869 39 H 0.251 0.749 40 H 0.253 0.747 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.111 0.889 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.896 6.155 14.430 27.755 hybrid contribution 0.984 -1.723 -0.234 1.998 sum -21.912 4.432 14.197 26.483 Atomic orbital electron populations 1.21735 0.76150 1.03946 1.02113 1.46209 1.06801 1.01891 1.76777 1.21703 0.97291 0.82992 1.02108 1.19556 0.85153 0.87374 0.89375 1.67980 1.41382 0.98471 1.22297 1.23624 0.91979 0.95844 0.86060 1.22745 0.96872 1.00251 1.09333 1.21257 0.95452 0.88624 0.90806 1.20336 0.86690 1.05271 0.82614 1.45513 1.05859 1.72067 1.10234 1.19877 0.83474 0.77744 0.88667 1.90763 1.55577 1.48977 1.45590 1.20286 0.83706 0.78772 0.89565 1.90710 1.55972 1.51340 1.45882 1.45734 1.06368 1.67274 1.12106 1.20824 0.94736 0.98383 0.81062 1.19093 0.89096 0.91191 1.01088 1.20637 1.38661 0.98680 0.96123 0.92291 1.25642 0.95653 1.01332 0.94778 1.70088 1.48664 1.30403 1.04988 0.85762 0.78700 0.80425 0.78038 1.20671 1.21326 1.19049 1.23061 1.02504 0.97156 0.99033 1.22401 1.01803 1.03600 0.90869 1.67627 1.07399 1.32396 1.22452 0.92792 0.88938 0.90861 0.92494 0.91818 0.88960 0.77771 0.81000 0.89186 0.86851 0.74859 0.74714 0.93937 0.92631 0.93185 0.88935 0.89908 0.91756 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.21 10.44 127.77 1.33 2.54 16 2 N -0.60 -10.52 3.37 -761.04 -2.57 -13.08 16 3 C 0.10 1.43 10.44 127.77 1.33 2.76 16 4 C 0.54 11.75 8.17 261.48 2.14 13.88 16 5 N -0.58 -11.30 9.11 -197.98 -1.80 -13.11 16 6 C 0.19 2.74 11.30 84.72 0.96 3.70 16 7 C -0.27 -3.90 9.83 22.45 0.22 -3.67 16 8 C 0.19 3.60 6.19 42.58 0.26 3.87 16 9 C 0.17 3.44 6.03 85.63 0.52 3.95 16 10 N -0.68 -16.96 5.54 -468.14 -2.59 -19.55 16 11 C 0.52 16.49 7.89 87.27 0.69 17.18 16 12 O -0.53 -18.41 16.49 -3.25 -0.05 -18.47 16 13 C 0.50 18.63 7.88 87.27 0.69 19.31 16 14 O -0.56 -23.16 16.46 -3.25 -0.05 -23.22 16 15 N -0.67 -26.50 5.37 -464.43 -2.49 -28.99 16 16 C 0.17 7.67 5.57 86.38 0.48 8.15 16 17 C 0.00 -0.18 1.51 -52.93 -0.08 -0.26 16 18 C -0.50 -25.92 8.38 25.60 0.21 -25.71 16 19 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 20 C 0.03 1.43 5.43 84.65 0.46 1.89 16 21 N -0.90 -50.58 12.72 21.45 0.27 -50.31 16 22 Si 0.94 42.75 29.54 68.60 2.03 44.78 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 26 C -0.18 -7.14 9.94 30.62 0.30 -6.84 16 27 C -0.15 -6.63 9.26 30.62 0.28 -6.35 16 28 N -0.57 -12.98 9.05 -186.04 -1.68 -14.66 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.09 0.62 8.07 -2.39 -0.02 0.60 16 31 H 0.07 0.97 7.33 -2.39 -0.02 0.95 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 1.14 7.33 -2.39 -0.02 1.13 16 34 H 0.09 0.83 8.07 -2.39 -0.02 0.81 16 35 H 0.21 1.27 8.06 -2.92 -0.02 1.25 16 36 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.11 1.88 8.06 -2.39 -0.02 1.86 16 39 H 0.42 10.29 7.95 -92.71 -0.74 9.55 16 40 H 0.42 16.22 7.73 -92.71 -0.72 15.50 16 41 H 0.04 2.17 8.09 -2.39 -0.02 2.15 16 42 H 0.06 2.28 8.11 -2.39 -0.02 2.26 16 43 H 0.26 14.02 8.32 -92.71 -0.77 13.25 16 44 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 45 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.06 3.14 8.14 -2.38 -0.02 3.12 16 47 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -68.06 407.21 0.41 -67.64 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.44 Total: 34.57 kcal Atomic # 6 Polarization: 24.60 SS G_CDS: 9.80 Total: 34.41 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -10.87 Total: -139.71 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -0.11 Total: -41.69 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -68.06 0.41 -67.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329551167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.826 kcal (2) G-P(sol) polarization free energy of solvation -68.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds