Wall clock time and date at job start Wed Apr 1 2020 05:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00092 * 2 1 4 4 N 1.46498 * 109.47630 * 124.99736 * 3 2 1 5 5 C 1.46497 * 120.00137 * 264.87860 * 4 3 2 6 6 C 1.50706 * 109.47166 * 263.12747 * 5 4 3 7 7 H 1.07994 * 119.99843 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99760 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00270 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99774 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47127 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47279 * 119.99562 * 10 8 6 13 13 H 1.48497 * 109.47118 * 240.00121 * 10 8 6 14 14 C 1.34769 * 119.99837 * 84.87847 * 4 3 2 15 15 O 1.21365 * 120.00127 * 4.00096 * 14 4 3 16 16 C 1.49345 * 119.99878 * 184.28629 * 14 4 3 17 17 O 1.21376 * 120.00051 * 354.36738 * 16 14 4 18 18 N 1.34778 * 119.99835 * 174.37523 * 16 14 4 19 19 C 1.39931 * 119.99918 * 179.97438 * 18 16 14 20 20 C 1.40706 * 125.94385 * 359.71907 * 19 18 16 21 21 C 1.34468 * 107.75285 * 179.79031 * 20 19 18 22 22 N 1.35567 * 107.98820 * 0.52280 * 21 20 19 23 23 N 1.31536 * 125.94967 * 180.02562 * 19 18 16 24 24 C 1.46664 * 123.57261 * 179.51136 * 22 21 20 25 25 C 1.53380 * 108.23916 * 343.55266 * 24 22 21 26 26 N 1.46975 * 109.72800 * 49.85438 * 25 24 22 27 27 C 1.46904 * 110.99851 * 165.18172 * 26 25 24 28 28 C 1.47362 * 111.12982 * 289.22312 * 26 25 24 29 29 H 1.07995 * 120.00331 * 0.02562 * 1 2 3 30 30 H 1.08008 * 119.99396 * 179.97438 * 1 2 3 31 31 H 1.08008 * 120.00678 * 179.97438 * 2 1 3 32 32 H 1.09007 * 109.46671 * 4.99948 * 3 2 1 33 33 H 1.09003 * 109.47465 * 245.00613 * 3 2 1 34 34 H 1.09007 * 109.47133 * 23.12247 * 5 4 3 35 35 H 1.08995 * 109.47652 * 143.12558 * 5 4 3 36 36 H 0.97001 * 119.99754 * 180.02562 * 9 8 6 37 37 H 0.96994 * 120.00309 * 359.97438 * 18 16 14 38 38 H 1.08002 * 126.12614 * 359.94079 * 20 19 18 39 39 H 1.08990 * 109.71083 * 103.23210 * 24 22 21 40 40 H 1.09002 * 109.70885 * 223.86311 * 24 22 21 41 41 H 1.09004 * 109.42692 * 289.77870 * 25 24 22 42 42 H 1.09000 * 109.43215 * 169.93438 * 25 24 22 43 43 H 1.09001 * 109.46866 * 188.06896 * 27 26 25 44 44 H 1.08994 * 109.47344 * 308.07367 * 27 26 25 45 45 H 1.09000 * 109.46826 * 68.07366 * 27 26 25 46 46 H 1.08995 * 109.75014 * 290.33248 * 28 26 25 47 47 H 1.08997 * 109.79043 * 169.62248 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5970 1.9664 2.3909 6 6 3.1312 3.3749 2.4341 7 1 3.7088 3.7589 1.6063 8 6 2.8835 4.1728 3.5309 9 7 2.1805 3.7049 4.5391 10 14 3.5462 5.9184 3.5847 11 1 4.2997 6.2006 2.3365 12 1 2.4158 6.8736 3.7076 13 1 4.4506 6.0688 4.7529 14 6 4.2144 0.7732 1.0135 15 8 4.5706 0.3123 -0.0512 16 6 5.1264 0.7154 2.1948 17 8 4.8112 1.2611 3.2321 18 7 6.2995 0.0575 2.1088 19 6 7.1543 0.0038 3.2154 20 6 6.9182 0.5937 4.4708 21 6 7.9693 0.3116 5.2606 22 7 8.8518 -0.4205 4.5374 23 7 8.3209 -0.6021 3.2614 24 6 10.1305 -0.9049 5.0678 25 6 10.4498 -0.1174 6.3446 26 7 9.2826 -0.1258 7.2377 27 6 9.6534 0.3036 8.5928 28 6 8.1949 0.7093 6.6983 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3584 2.1316 0.0896 33 1 2.6212 1.4027 -0.9314 34 1 1.5094 1.9881 2.4601 35 1 3.0030 1.3980 3.2277 36 1 2.0059 4.2665 5.3106 37 1 6.5513 -0.3788 1.2799 38 1 6.0474 1.1679 4.7509 39 1 10.0533 -1.9668 5.3006 40 1 10.9180 -0.7458 4.3311 41 1 10.6990 0.9112 6.0835 42 1 11.2978 -0.5774 6.8519 43 1 8.8092 0.1524 9.2655 44 1 10.5041 -0.2829 8.9397 45 1 9.9219 1.3599 8.5784 46 1 8.4778 1.7607 6.7494 47 1 7.2836 0.5449 7.2731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329815251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:48 Heat of formation + Delta-G solvation = 77.096553 kcal Electronic energy + Delta-G solvation = -30870.023834 eV Core-core repulsion = 26670.979868 eV Total energy + Delta-G solvation = -4199.043966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.51160 -40.12572 -38.31869 -37.55904 -35.89445 -34.50126 -33.30107 -32.85946 -32.06925 -31.01438 -28.58959 -27.53019 -27.00440 -26.48522 -24.61598 -23.73366 -22.74209 -22.29262 -20.68532 -19.79091 -19.56594 -18.61465 -17.09260 -16.93501 -16.54355 -16.47780 -15.95631 -15.67643 -15.27621 -15.14406 -15.07101 -14.92625 -14.52979 -14.46994 -14.17057 -13.75432 -13.57833 -13.02780 -12.90950 -12.78523 -12.69753 -12.47177 -12.28652 -12.03002 -11.80468 -11.73886 -11.60952 -11.49581 -11.12321 -10.90886 -10.83824 -10.48927 -10.46428 -10.35958 -9.99653 -9.65887 -9.22075 -8.94511 -8.71543 -8.45104 -8.26303 -7.99583 -7.81185 -6.02858 -4.05566 1.75057 2.14767 2.21275 2.49441 3.09590 3.11221 3.29701 3.37442 3.42081 3.43198 3.95125 4.12361 4.27267 4.42568 4.49498 4.60703 4.79864 4.96822 5.06467 5.09911 5.17544 5.22509 5.28569 5.33557 5.39164 5.46570 5.47077 5.52961 5.56066 5.82369 5.89518 5.96898 6.09241 6.22905 6.42281 6.49201 6.52432 6.61477 6.85507 6.99147 7.01775 7.18128 7.29904 7.44099 7.47689 7.86554 8.01394 8.11770 8.19680 8.36293 8.64264 8.96723 9.57544 11.05783 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010162 B = 0.003384 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.802590 B = 8273.114115 C =10190.056972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C 0.141 3.859 4 N -0.554 5.554 5 C 0.220 3.780 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.071 3.929 9 N -0.888 5.888 10 Si 0.892 3.108 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.513 3.487 15 O -0.557 6.557 16 C 0.501 3.499 17 O -0.429 6.429 18 N -0.623 5.623 19 C 0.308 3.692 20 C -0.248 4.248 21 C 0.085 3.915 22 N -0.367 5.367 23 N -0.322 5.322 24 C 0.148 3.852 25 C 0.037 3.963 26 N -0.546 5.546 27 C 0.025 3.975 28 C 0.119 3.881 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.261 0.739 37 H 0.420 0.580 38 H 0.180 0.820 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.031 0.969 46 H 0.064 0.936 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.898 -8.323 3.924 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.179 4.179 3 C 0.018 3.982 4 N -0.283 5.283 5 C 0.102 3.898 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.132 4.132 9 N -0.527 5.527 10 Si 0.720 3.280 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.295 3.705 15 O -0.438 6.438 16 C 0.281 3.719 17 O -0.295 6.295 18 N -0.275 5.275 19 C 0.053 3.947 20 C -0.279 4.279 21 C -0.042 4.042 22 N -0.153 5.153 23 N -0.152 5.152 24 C 0.026 3.974 25 C -0.092 4.092 26 N -0.271 5.271 27 C -0.123 4.123 28 C -0.010 4.010 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.257 0.743 38 H 0.197 0.803 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.050 0.950 46 H 0.082 0.918 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.455 -9.250 3.746 15.960 hybrid contribution 0.237 2.045 0.077 2.061 sum 12.693 -7.205 3.823 15.087 Atomic orbital electron populations 1.23796 0.95701 1.01744 1.01188 1.23328 0.96146 0.99079 0.99304 1.20606 0.92073 0.95363 0.90140 1.48259 1.11784 1.51797 1.16473 1.20168 0.96514 0.93688 0.79455 1.21284 1.34226 0.96852 1.03451 0.92670 1.24786 0.94993 0.98205 0.95201 1.69934 1.39130 1.36488 1.07127 0.86549 0.78726 0.84706 0.78060 1.19922 1.21056 1.20957 1.19536 0.83216 0.80201 0.87516 1.90670 1.75362 1.49265 1.28495 1.20372 0.81683 0.79783 0.90031 1.90847 1.70534 1.38660 1.29447 1.42371 1.17516 1.54280 1.13297 1.19130 0.90144 0.96799 0.88666 1.21459 1.03006 1.11471 0.91926 1.20865 0.91651 0.97236 0.94436 1.48024 1.16331 1.43370 1.07578 1.77207 1.10596 1.28256 0.99114 1.21788 0.82212 0.99399 0.94020 1.22525 0.93849 0.99917 0.92914 1.62153 1.08202 1.53741 1.02966 1.22405 1.02076 0.98739 0.89036 1.20959 0.96077 0.95155 0.88823 0.88309 0.88697 0.87572 0.89068 0.89771 0.94892 0.90515 0.92909 0.74287 0.80332 0.89481 0.88924 0.93314 0.88122 0.90531 0.90962 0.95032 0.91774 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 14.32 29.02 0.42 -2.13 16 2 C -0.16 -2.51 9.80 -36.02 -0.35 -2.87 16 3 C 0.14 2.51 5.80 -5.19 -0.03 2.48 16 4 N -0.55 -11.75 2.47 -176.98 -0.44 -12.19 16 5 C 0.22 5.41 4.74 -5.19 -0.02 5.38 16 6 C -0.52 -13.98 8.37 -34.44 -0.29 -14.27 16 7 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 8 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 9 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 10 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.51 10.79 7.62 -11.64 -0.09 10.70 16 15 O -0.56 -11.66 16.12 5.48 0.09 -11.57 16 16 C 0.50 10.43 7.74 -11.63 -0.09 10.34 16 17 O -0.43 -10.03 9.52 5.47 0.05 -9.98 16 18 N -0.62 -11.40 5.43 -11.46 -0.06 -11.46 16 19 C 0.31 5.72 8.11 -154.24 -1.25 4.46 16 20 C -0.25 -4.58 9.56 -39.98 -0.38 -4.96 16 21 C 0.08 1.30 6.68 -82.19 -0.55 0.75 16 22 N -0.37 -5.43 4.06 -56.84 -0.23 -5.66 16 23 N -0.32 -5.57 12.66 31.51 0.40 -5.17 16 24 C 0.15 1.46 7.53 -3.76 -0.03 1.43 16 25 C 0.04 0.30 5.54 -3.59 -0.02 0.28 16 26 N -0.55 -5.23 4.92 -243.55 -1.20 -6.42 16 27 C 0.03 0.17 9.63 60.07 0.58 0.75 16 28 C 0.12 1.38 5.87 -4.64 -0.03 1.36 16 29 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 30 H 0.09 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 32 H 0.09 1.58 7.68 -51.92 -0.40 1.18 16 33 H 0.08 1.46 7.53 -51.93 -0.39 1.07 16 34 H 0.03 0.84 8.02 -51.93 -0.42 0.42 16 35 H 0.08 2.04 5.37 -51.94 -0.28 1.76 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.42 6.90 8.30 -40.82 -0.34 6.57 16 38 H 0.18 3.66 5.92 -52.49 -0.31 3.35 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.41 8.07 -51.93 -0.42 -0.01 16 42 H 0.10 0.52 7.86 -51.93 -0.41 0.11 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.38 7.92 -51.93 -0.41 -0.03 16 45 H 0.03 0.21 8.11 -51.93 -0.42 -0.22 16 46 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 47 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 391.63 15.07 5.90 5.90 Total: -1.00 -32.50 391.63 -8.72 -41.22 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.71 Total: 7.88 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: -2.24 Total: 15.56 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -0.79 Total: -65.38 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: 0.14 Total: -21.55 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.50 -8.72 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329815251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.313 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds