Wall clock time and date at job start Wed Apr 1 2020 05:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00092 * 2 1 4 4 N 1.46498 * 109.47630 * 124.99736 * 3 2 1 5 5 C 1.46497 * 120.00137 * 264.87860 * 4 3 2 6 6 C 1.50706 * 109.47166 * 263.12747 * 5 4 3 7 7 H 1.07994 * 119.99843 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99760 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00270 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99774 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47127 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47279 * 119.99562 * 10 8 6 13 13 H 1.48497 * 109.47118 * 240.00121 * 10 8 6 14 14 C 1.34769 * 119.99837 * 84.87847 * 4 3 2 15 15 O 1.21365 * 120.00127 * 4.00096 * 14 4 3 16 16 C 1.49345 * 119.99878 * 184.28629 * 14 4 3 17 17 O 1.21376 * 120.00051 * 354.36738 * 16 14 4 18 18 N 1.34778 * 119.99835 * 174.37523 * 16 14 4 19 19 C 1.39931 * 119.99918 * 179.97438 * 18 16 14 20 20 C 1.40706 * 125.94385 * 359.71907 * 19 18 16 21 21 C 1.34468 * 107.75285 * 179.79031 * 20 19 18 22 22 N 1.35567 * 107.98820 * 0.52280 * 21 20 19 23 23 N 1.31536 * 125.94967 * 180.02562 * 19 18 16 24 24 C 1.46664 * 123.57261 * 179.51136 * 22 21 20 25 25 C 1.53380 * 108.23916 * 343.55266 * 24 22 21 26 26 N 1.46975 * 109.72800 * 49.85438 * 25 24 22 27 27 C 1.46904 * 110.99851 * 165.18172 * 26 25 24 28 28 C 1.47362 * 111.12982 * 289.22312 * 26 25 24 29 29 H 1.07995 * 120.00331 * 0.02562 * 1 2 3 30 30 H 1.08008 * 119.99396 * 179.97438 * 1 2 3 31 31 H 1.08008 * 120.00678 * 179.97438 * 2 1 3 32 32 H 1.09007 * 109.46671 * 4.99948 * 3 2 1 33 33 H 1.09003 * 109.47465 * 245.00613 * 3 2 1 34 34 H 1.09007 * 109.47133 * 23.12247 * 5 4 3 35 35 H 1.08995 * 109.47652 * 143.12558 * 5 4 3 36 36 H 0.97001 * 119.99754 * 180.02562 * 9 8 6 37 37 H 0.96994 * 120.00309 * 359.97438 * 18 16 14 38 38 H 1.08002 * 126.12614 * 359.94079 * 20 19 18 39 39 H 1.08990 * 109.71083 * 103.23210 * 24 22 21 40 40 H 1.09002 * 109.70885 * 223.86311 * 24 22 21 41 41 H 1.09004 * 109.42692 * 289.77870 * 25 24 22 42 42 H 1.09000 * 109.43215 * 169.93438 * 25 24 22 43 43 H 1.09001 * 109.46866 * 188.06896 * 27 26 25 44 44 H 1.08994 * 109.47344 * 308.07367 * 27 26 25 45 45 H 1.09000 * 109.46826 * 68.07366 * 27 26 25 46 46 H 1.08995 * 109.75014 * 290.33248 * 28 26 25 47 47 H 1.08997 * 109.79043 * 169.62248 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5970 1.9664 2.3909 6 6 3.1312 3.3749 2.4341 7 1 3.7088 3.7589 1.6063 8 6 2.8835 4.1728 3.5309 9 7 2.1805 3.7049 4.5391 10 14 3.5462 5.9184 3.5847 11 1 4.2997 6.2006 2.3365 12 1 2.4158 6.8736 3.7076 13 1 4.4506 6.0688 4.7529 14 6 4.2144 0.7732 1.0135 15 8 4.5706 0.3123 -0.0512 16 6 5.1264 0.7154 2.1948 17 8 4.8112 1.2611 3.2321 18 7 6.2995 0.0575 2.1088 19 6 7.1543 0.0038 3.2154 20 6 6.9182 0.5937 4.4708 21 6 7.9693 0.3116 5.2606 22 7 8.8518 -0.4205 4.5374 23 7 8.3209 -0.6021 3.2614 24 6 10.1305 -0.9049 5.0678 25 6 10.4498 -0.1174 6.3446 26 7 9.2826 -0.1258 7.2377 27 6 9.6534 0.3036 8.5928 28 6 8.1949 0.7093 6.6983 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3584 2.1316 0.0896 33 1 2.6212 1.4027 -0.9314 34 1 1.5094 1.9881 2.4601 35 1 3.0030 1.3980 3.2277 36 1 2.0059 4.2665 5.3106 37 1 6.5513 -0.3788 1.2799 38 1 6.0474 1.1679 4.7509 39 1 10.0533 -1.9668 5.3006 40 1 10.9180 -0.7458 4.3311 41 1 10.6990 0.9112 6.0835 42 1 11.2978 -0.5774 6.8519 43 1 8.8092 0.1524 9.2655 44 1 10.5041 -0.2829 8.9397 45 1 9.9219 1.3599 8.5784 46 1 8.4778 1.7607 6.7494 47 1 7.2836 0.5449 7.2731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329815251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:47 Heat of formation + Delta-G solvation = 54.650581 kcal Electronic energy + Delta-G solvation = -30870.997165 eV Core-core repulsion = 26670.979868 eV Total energy + Delta-G solvation = -4200.017296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.79278 -41.71978 -39.74841 -38.64159 -37.52486 -35.89129 -35.02491 -33.92471 -33.79550 -32.16241 -29.68487 -29.41054 -28.07383 -27.85230 -25.81612 -25.12961 -24.41278 -23.30499 -22.10951 -21.17857 -20.78017 -19.94192 -18.81303 -18.30802 -18.19676 -17.85281 -17.19258 -17.05591 -16.81993 -16.63377 -16.16879 -16.02039 -15.82660 -15.76351 -15.63579 -15.11457 -14.75730 -14.49741 -14.27600 -14.14453 -14.06309 -13.56030 -13.48429 -13.35738 -13.06785 -12.86763 -12.82288 -12.75404 -12.56370 -12.45662 -12.35713 -12.25561 -11.87466 -11.78761 -11.72679 -11.59039 -10.69187 -10.46105 -10.08257 -9.94351 -9.65059 -9.47248 -9.26669 -8.12578 -6.21724 0.20479 0.81528 0.84785 1.30313 1.38876 1.41119 1.51293 1.64621 1.78952 2.30910 2.42860 2.63818 2.69234 3.20785 3.25619 3.43172 3.54986 3.91648 4.02518 4.08760 4.16736 4.18927 4.36810 4.46328 4.47228 4.49165 4.56385 4.60970 4.66944 4.72740 4.77455 4.80436 4.83446 4.97177 5.02744 5.06881 5.39387 5.50232 5.60483 5.68103 5.75644 5.78189 5.82812 5.83903 5.91942 6.06135 6.12999 6.26788 6.61827 6.78848 6.82627 7.02503 7.44632 8.95753 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010162 B = 0.003384 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.802590 B = 8273.114115 C =10190.056972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.185 4.185 3 C 0.138 3.862 4 N -0.557 5.557 5 C 0.239 3.761 6 C -0.526 4.526 7 H 0.044 0.956 8 C 0.027 3.973 9 N -0.916 5.916 10 Si 0.949 3.051 11 H -0.275 1.275 12 H -0.273 1.273 13 H -0.282 1.282 14 C 0.513 3.487 15 O -0.556 6.556 16 C 0.500 3.500 17 O -0.460 6.460 18 N -0.610 5.610 19 C 0.286 3.714 20 C -0.285 4.285 21 C 0.099 3.901 22 N -0.358 5.358 23 N -0.330 5.330 24 C 0.134 3.866 25 C 0.040 3.960 26 N -0.556 5.556 27 C 0.025 3.975 28 C 0.120 3.880 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.264 0.736 37 H 0.428 0.572 38 H 0.151 0.849 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.048 0.952 42 H 0.139 0.861 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.036 0.964 46 H 0.073 0.927 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.527 -8.635 4.608 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.204 4.204 3 C 0.017 3.983 4 N -0.287 5.287 5 C 0.120 3.880 6 C -0.565 4.565 7 H 0.062 0.938 8 C -0.173 4.173 9 N -0.556 5.556 10 Si 0.775 3.225 11 H -0.200 1.200 12 H -0.198 1.198 13 H -0.208 1.208 14 C 0.295 3.705 15 O -0.438 6.438 16 C 0.281 3.719 17 O -0.329 6.329 18 N -0.262 5.262 19 C 0.032 3.968 20 C -0.315 4.315 21 C -0.030 4.030 22 N -0.144 5.144 23 N -0.161 5.161 24 C 0.014 3.986 25 C -0.088 4.088 26 N -0.281 5.281 27 C -0.122 4.122 28 C -0.009 4.009 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.266 0.734 38 H 0.169 0.831 39 H 0.117 0.883 40 H 0.130 0.870 41 H 0.066 0.934 42 H 0.157 0.843 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.055 0.945 46 H 0.091 0.909 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.117 -9.597 4.393 17.627 hybrid contribution -0.188 2.044 -0.104 2.055 sum 13.929 -7.554 4.289 16.416 Atomic orbital electron populations 1.24069 0.94913 1.03306 0.97448 1.23147 0.96849 0.97753 1.02683 1.20780 0.91776 0.96906 0.88864 1.48225 1.12464 1.51577 1.16412 1.19685 0.95247 0.92660 0.80446 1.21436 1.33941 0.97982 1.03152 0.93785 1.25477 0.95237 1.01726 0.94892 1.70024 1.40115 1.37837 1.07628 0.85651 0.78366 0.80659 0.77805 1.19973 1.19822 1.20781 1.19579 0.83232 0.80153 0.87575 1.90655 1.75326 1.49359 1.28427 1.20409 0.82207 0.79730 0.89590 1.90853 1.71384 1.40287 1.30333 1.42171 1.16816 1.53428 1.13776 1.19240 0.90805 0.98037 0.88713 1.21288 1.03789 1.13384 0.93059 1.21239 0.90486 0.95611 0.95702 1.48529 1.17304 1.42020 1.06515 1.77124 1.09992 1.28115 1.00867 1.22348 0.80412 1.00418 0.95424 1.22648 0.94256 0.99963 0.91974 1.62175 1.08332 1.53282 1.04287 1.22485 1.02906 0.99450 0.87336 1.21001 0.97417 0.95947 0.86509 0.87541 0.86214 0.87886 0.88835 0.89551 0.96011 0.92598 0.92680 0.73384 0.83115 0.88254 0.86977 0.93392 0.84321 0.90602 0.88741 0.94536 0.90941 0.87243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 14.32 67.79 0.97 -3.12 16 2 C -0.19 -5.76 9.80 25.65 0.25 -5.51 16 3 C 0.14 4.98 5.80 85.63 0.50 5.47 16 4 N -0.56 -24.38 2.47 -832.20 -2.06 -26.44 16 5 C 0.24 12.22 4.74 85.64 0.41 12.63 16 6 C -0.53 -29.13 8.37 25.60 0.21 -28.91 16 7 H 0.04 2.48 7.81 -2.91 -0.02 2.46 16 8 C 0.03 1.48 5.46 84.65 0.46 1.94 16 9 N -0.92 -53.10 13.29 21.45 0.28 -52.81 16 10 Si 0.95 44.35 29.54 68.60 2.03 46.37 16 11 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 14 C 0.51 22.24 7.62 87.24 0.66 22.91 16 15 O -0.56 -23.64 16.12 -3.29 -0.05 -23.69 16 16 C 0.50 21.87 7.74 87.24 0.67 22.55 16 17 O -0.46 -22.87 9.52 -3.33 -0.03 -22.90 16 18 N -0.61 -23.29 5.43 -308.53 -1.68 -24.96 16 19 C 0.29 11.00 8.11 133.39 1.08 12.08 16 20 C -0.28 -11.01 9.56 22.01 0.21 -10.80 16 21 C 0.10 3.03 6.68 41.17 0.27 3.31 16 22 N -0.36 -10.24 4.06 -333.73 -1.36 -11.60 16 23 N -0.33 -11.43 12.66 -54.24 -0.69 -12.12 16 24 C 0.13 2.29 7.53 86.48 0.65 2.94 16 25 C 0.04 0.51 5.54 86.42 0.48 0.99 16 26 N -0.56 -9.22 4.92 -924.46 -4.55 -13.77 16 27 C 0.03 0.27 9.63 127.69 1.23 1.50 16 28 C 0.12 2.70 5.87 85.52 0.50 3.21 16 29 H 0.11 2.57 7.84 -2.91 -0.02 2.55 16 30 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.10 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.09 3.26 7.68 -2.38 -0.02 3.25 16 33 H 0.09 3.03 7.53 -2.39 -0.02 3.01 16 34 H 0.02 1.15 8.02 -2.38 -0.02 1.13 16 35 H 0.06 3.14 5.37 -2.46 -0.01 3.13 16 36 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.43 14.50 8.30 -92.71 -0.77 13.73 16 38 H 0.15 6.71 5.92 -2.91 -0.02 6.70 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.05 0.65 8.07 -2.38 -0.02 0.63 16 42 H 0.14 0.76 7.86 -2.39 -0.02 0.74 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.09 0.62 7.92 -2.39 -0.02 0.60 16 45 H 0.04 0.37 8.11 -2.39 -0.02 0.35 16 46 H 0.07 1.52 8.11 -2.39 -0.02 1.50 16 47 H 0.11 2.44 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -71.89 391.63 0.70 -71.19 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.23 Total: 29.57 kcal Atomic # 6 Polarization: 32.60 SS G_CDS: 8.57 Total: 41.17 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -10.04 Total: -141.70 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -0.08 Total: -46.60 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -71.89 0.70 -71.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329815251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.840 kcal (2) G-P(sol) polarization free energy of solvation -71.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds