Wall clock time and date at job start Wed Apr 1 2020 05:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47826 * 111.00273 * 2 1 4 4 C 1.54786 * 107.03585 * 125.02011 * 3 2 1 5 5 C 1.54461 * 101.92775 * 22.81218 * 4 3 2 6 6 H 1.08998 * 109.50090 * 76.67299 * 5 4 3 7 7 C 1.49913 * 112.94469 * 198.13054 * 5 4 3 8 8 N 1.43981 * 116.17953 * 96.06459 * 7 5 4 9 9 C 1.34780 * 116.39852 * 177.25519 * 8 7 5 10 10 O 1.21367 * 119.99580 * 359.97236 * 9 8 7 11 11 C 1.49304 * 120.00140 * 179.97438 * 9 8 7 12 12 O 1.21401 * 120.00330 * 359.97438 * 11 9 8 13 13 N 1.34780 * 120.00140 * 179.97438 * 11 9 8 14 14 C 1.40291 * 120.00070 * 179.97438 * 13 11 9 15 15 C 1.40714 * 126.10258 * 359.68582 * 14 13 11 16 16 N 1.30877 * 108.37745 * 179.85423 * 15 14 13 17 17 N 1.40058 * 108.43400 * 0.40847 * 16 15 14 18 18 C 1.37297 * 126.05779 * 179.74443 * 17 16 15 19 19 H 1.07998 * 120.00687 * 179.97438 * 18 17 16 20 20 C 1.39008 * 119.99528 * 359.97438 * 18 17 16 21 21 N 1.31281 * 120.00482 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99745 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46850 * 90.00475 * 22 20 18 24 24 H 1.48504 * 109.46968 * 210.00185 * 22 20 18 25 25 H 1.48498 * 109.47347 * 329.99977 * 22 20 18 26 26 C 1.35789 * 126.09491 * 179.97438 * 14 13 11 27 27 C 1.44340 * 127.20426 * 357.22508 * 8 7 5 28 28 C 1.51576 * 113.05485 * 352.42375 * 27 8 7 29 29 C 1.49050 * 111.00141 * 120.00651 * 2 1 3 30 30 H 1.09001 * 112.31211 * 89.03728 * 29 2 1 31 31 H 1.08995 * 109.47374 * 59.87575 * 1 2 3 32 32 H 1.09006 * 109.46986 * 179.87472 * 1 2 3 33 33 H 1.09004 * 109.47134 * 299.87015 * 1 2 3 34 34 H 1.09003 * 109.92077 * 244.36889 * 3 2 1 35 35 H 1.09000 * 109.91825 * 5.47117 * 3 2 1 36 36 H 1.09007 * 110.93803 * 140.96668 * 4 3 2 37 37 H 1.09003 * 110.94355 * 264.65017 * 4 3 2 38 38 H 1.09005 * 108.13455 * 217.80333 * 7 5 4 39 39 H 1.08989 * 108.13838 * 334.31523 * 7 5 4 40 40 H 0.97005 * 119.99590 * 359.97438 * 13 11 9 41 41 H 1.08001 * 125.81224 * 359.97438 * 15 14 13 42 42 H 0.97001 * 120.00594 * 179.97438 * 21 20 18 43 43 H 1.08001 * 126.25573 * 0.02562 * 26 14 13 44 44 H 1.09002 * 108.76619 * 231.49428 * 27 8 7 45 45 H 1.09004 * 108.76304 * 113.34620 * 27 8 7 46 46 H 1.08999 * 109.05960 * 278.97318 * 28 27 8 47 47 H 1.09002 * 109.06222 * 160.05724 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3800 0.0000 4 6 2.9542 1.4990 1.2120 5 6 3.3405 0.0242 1.4600 6 1 4.0711 -0.2908 0.7150 7 6 3.9113 -0.2087 2.8265 8 7 2.9886 -0.6727 3.8297 9 6 3.5081 -0.9381 5.0447 10 8 4.6952 -0.7827 5.2442 11 6 2.6234 -1.4234 6.1451 12 8 1.4360 -1.5785 5.9457 13 7 3.1430 -1.6894 7.3599 14 6 2.3115 -2.1449 8.3941 15 6 0.9240 -2.3622 8.3075 16 7 0.4997 -2.7881 9.4701 17 7 1.5921 -2.8507 10.3444 18 6 1.5538 -3.2463 11.6586 19 1 2.4601 -3.2578 12.2458 20 6 0.3483 -3.6321 12.2333 21 7 -0.7534 -3.6186 11.5194 22 14 0.2960 -4.1697 14.0215 23 1 0.0448 -2.9888 14.8862 24 1 -0.7938 -5.1610 14.2087 25 1 1.5951 -4.7867 14.3912 26 6 2.7014 -2.4494 9.6586 27 6 1.5689 -0.8844 3.6786 28 6 1.0336 -0.3924 2.3486 29 6 2.0031 -0.6959 1.2050 30 1 2.1356 -1.7652 1.0406 31 1 -0.3634 0.5157 -0.8888 32 1 -0.3633 -1.0277 -0.0022 33 1 -0.3633 0.5118 0.8912 34 1 2.5458 1.5679 -0.9240 35 1 1.1795 2.0923 0.0977 36 1 3.8317 2.0943 0.9593 37 1 2.4374 1.9169 2.0760 38 1 4.7138 -0.9412 2.7387 39 1 4.3496 0.7264 3.1749 40 1 4.0918 -1.5659 7.5192 41 1 0.3133 -2.2062 7.4305 42 1 -1.5945 -3.8882 11.9204 43 1 3.7057 -2.3847 10.0504 44 1 1.0489 -0.3613 4.4812 45 1 1.3621 -1.9510 3.7669 46 1 0.8755 0.6846 2.4050 47 1 0.0803 -0.8806 2.1460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330221335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:22 Heat of formation + Delta-G solvation = 53.956810 kcal Electronic energy + Delta-G solvation = -30696.056043 eV Core-core repulsion = 26496.008662 eV Total energy + Delta-G solvation = -4200.047381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.43380 -40.19918 -39.43097 -37.97578 -36.33222 -34.33564 -33.42277 -33.15875 -31.47258 -30.34686 -29.67628 -28.09851 -26.76857 -25.61228 -24.65404 -23.70443 -23.02353 -21.10400 -21.07619 -20.21077 -19.49408 -18.69900 -17.83358 -17.48915 -16.66284 -16.45257 -15.96701 -15.90670 -15.52438 -15.25813 -15.03007 -14.60083 -14.35448 -14.19859 -14.02854 -13.73511 -13.67605 -13.33091 -13.20304 -13.04212 -12.94960 -12.68427 -12.08690 -11.93476 -11.75098 -11.66377 -11.57806 -11.42694 -11.30493 -11.16702 -11.06834 -10.91052 -10.85102 -10.78090 -10.56847 -10.29509 -9.25380 -8.99422 -8.87958 -8.75238 -8.55283 -8.14845 -6.79259 -6.62223 -4.29467 1.62840 2.51248 2.91711 3.02545 3.07441 3.28377 3.54141 3.65271 3.68346 3.84010 4.11923 4.20060 4.34971 4.44385 4.53316 4.69864 4.72339 4.88199 4.92281 4.96489 4.97925 5.03784 5.05987 5.14612 5.26761 5.37348 5.43470 5.48047 5.50660 5.60230 5.69244 5.79160 5.84184 5.92361 6.02374 6.18360 6.34047 6.48163 6.52788 6.66647 6.73529 6.86474 6.87468 7.05824 7.14768 7.70308 7.81576 8.08288 8.16510 8.46723 8.67686 9.29334 9.58008 10.33557 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026955 B = 0.002091 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.502048 B =13390.533335 C =14238.773963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.531 5.531 3 C 0.039 3.961 4 C -0.137 4.137 5 C -0.098 4.098 6 H 0.095 0.905 7 C 0.130 3.870 8 N -0.572 5.572 9 C 0.502 3.498 10 O -0.528 6.528 11 C 0.483 3.517 12 O -0.518 6.518 13 N -0.583 5.583 14 C -0.069 4.069 15 C -0.027 4.027 16 N -0.261 5.261 17 N -0.138 5.138 18 C -0.321 4.321 19 H 0.118 0.882 20 C 0.046 3.954 21 N -0.768 5.768 22 Si 0.936 3.064 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.263 1.263 26 C -0.078 4.078 27 C 0.115 3.885 28 C -0.159 4.159 29 C 0.079 3.921 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.409 0.591 41 H 0.178 0.822 42 H 0.276 0.724 43 H 0.149 0.851 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.268 7.897 -19.254 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.254 5.254 3 C -0.089 4.089 4 C -0.175 4.175 5 C -0.117 4.117 6 H 0.113 0.887 7 C 0.007 3.993 8 N -0.305 5.305 9 C 0.285 3.715 10 O -0.404 6.404 11 C 0.264 3.736 12 O -0.396 6.396 13 N -0.225 5.225 14 C -0.175 4.175 15 C -0.202 4.202 16 N -0.092 5.092 17 N 0.095 4.905 18 C -0.454 4.454 19 H 0.136 0.864 20 C -0.171 4.171 21 N -0.394 5.394 22 Si 0.759 3.241 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.187 1.187 26 C -0.229 4.229 27 C -0.008 4.008 28 C -0.198 4.198 29 C -0.029 4.029 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.244 0.756 41 H 0.194 0.806 42 H 0.086 0.914 43 H 0.166 0.834 44 H 0.116 0.884 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.906 7.193 -19.147 20.823 hybrid contribution 0.895 0.588 1.034 1.489 sum 4.802 7.782 -18.113 20.290 Atomic orbital electron populations 1.22636 0.87734 1.02403 1.00877 1.64228 1.08229 1.14096 1.38879 1.22965 0.97781 0.89598 0.98522 1.22896 0.99976 0.96157 0.98469 1.21552 0.97907 0.96055 0.96223 0.88666 1.20045 0.91302 1.00744 0.87172 1.46557 1.09377 1.64332 1.10272 1.20446 0.87991 0.79175 0.83888 1.90723 1.15880 1.51679 1.82117 1.19565 0.88074 0.82325 0.83627 1.90632 1.15478 1.52333 1.81175 1.42148 1.11513 1.60456 1.08379 1.17245 0.91452 1.20266 0.88488 1.24137 0.92224 1.05668 0.98192 1.78260 1.08139 1.24472 0.98284 1.44561 1.03265 1.34757 1.07920 1.19923 0.97057 1.45419 0.82979 0.86440 1.25666 0.94684 0.95927 1.00860 1.70202 0.98944 1.34316 1.35938 0.85806 0.79002 0.78891 0.80354 1.19527 1.20036 1.18730 1.21312 0.93461 1.15779 0.92357 1.21297 0.78838 1.02987 0.97632 1.22323 1.00352 1.02125 0.94957 1.22650 0.93008 0.99311 0.87900 0.87883 0.91614 0.91134 0.94386 0.90321 0.92705 0.90261 0.90992 0.91065 0.91293 0.75636 0.80552 0.91353 0.83374 0.88400 0.90493 0.91414 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 8.07 60.06 0.48 0.57 16 2 N -0.53 -4.37 5.46 -230.56 -1.26 -5.63 16 3 C 0.04 0.28 6.62 -2.37 -0.02 0.26 16 4 C -0.14 -0.98 5.69 -25.02 -0.14 -1.12 16 5 C -0.10 -0.79 2.88 -90.86 -0.26 -1.06 16 6 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 7 C 0.13 1.33 5.11 -6.91 -0.04 1.29 16 8 N -0.57 -7.13 3.20 -180.64 -0.58 -7.71 16 9 C 0.50 7.70 7.60 -11.65 -0.09 7.61 16 10 O -0.53 -8.76 16.12 5.48 0.09 -8.67 16 11 C 0.48 8.55 7.70 -11.65 -0.09 8.46 16 12 O -0.52 -9.85 9.84 5.45 0.05 -9.80 16 13 N -0.58 -10.86 5.45 -10.46 -0.06 -10.92 16 14 C -0.07 -1.56 6.90 -83.93 -0.58 -2.14 16 15 C -0.03 -0.67 10.84 -17.02 -0.18 -0.86 16 16 N -0.26 -7.38 10.39 30.81 0.32 -7.06 16 17 N -0.14 -3.73 3.73 -11.40 -0.04 -3.77 16 18 C -0.32 -8.35 10.25 -14.82 -0.15 -8.50 16 19 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 20 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 21 N -0.77 -21.01 11.81 55.50 0.66 -20.35 16 22 Si 0.94 18.58 29.55 -169.99 -5.02 13.55 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 25 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 26 C -0.08 -1.81 11.50 -16.38 -0.19 -2.00 16 27 C 0.12 1.37 4.66 -5.91 -0.03 1.34 16 28 C -0.16 -1.45 3.69 -27.47 -0.10 -1.55 16 29 C 0.08 0.68 3.76 -66.01 -0.25 0.43 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.50 8.02 -51.93 -0.42 0.08 16 33 H 0.04 0.27 5.97 -51.93 -0.31 -0.04 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.37 7.60 -51.93 -0.39 -0.03 16 36 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 37 H 0.07 0.58 7.16 -51.93 -0.37 0.21 16 38 H 0.07 0.75 7.97 -51.93 -0.41 0.33 16 39 H 0.07 0.72 7.78 -51.94 -0.40 0.31 16 40 H 0.41 6.64 8.29 -40.82 -0.34 6.30 16 41 H 0.18 4.30 5.92 -52.49 -0.31 3.98 16 42 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.15 2.90 8.06 -52.49 -0.42 2.48 16 44 H 0.10 1.34 6.29 -51.93 -0.33 1.01 16 45 H 0.08 1.00 7.42 -51.93 -0.39 0.61 16 46 H 0.07 0.62 5.84 -51.93 -0.30 0.32 16 47 H 0.09 0.73 6.71 -51.93 -0.35 0.39 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -31.29 367.50 -8.44 -39.72 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.41 Total: 11.26 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -1.73 Total: 3.83 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.96 Total: -55.44 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.14 Total: -18.46 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.29 -8.44 -39.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330221335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.679 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds