Wall clock time and date at job start Wed Apr 1 2020 05:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47826 * 111.00273 * 2 1 4 4 C 1.54786 * 107.03585 * 125.02011 * 3 2 1 5 5 C 1.54461 * 101.92775 * 22.81218 * 4 3 2 6 6 H 1.08998 * 109.50090 * 76.67299 * 5 4 3 7 7 C 1.49913 * 112.94469 * 198.13054 * 5 4 3 8 8 N 1.43981 * 116.17953 * 96.06459 * 7 5 4 9 9 C 1.34780 * 116.39852 * 177.25519 * 8 7 5 10 10 O 1.21367 * 119.99580 * 359.97236 * 9 8 7 11 11 C 1.49304 * 120.00140 * 179.97438 * 9 8 7 12 12 O 1.21401 * 120.00330 * 359.97438 * 11 9 8 13 13 N 1.34780 * 120.00140 * 179.97438 * 11 9 8 14 14 C 1.40291 * 120.00070 * 179.97438 * 13 11 9 15 15 C 1.40714 * 126.10258 * 359.68582 * 14 13 11 16 16 N 1.30877 * 108.37745 * 179.85423 * 15 14 13 17 17 N 1.40058 * 108.43400 * 0.40847 * 16 15 14 18 18 C 1.37297 * 126.05779 * 179.74443 * 17 16 15 19 19 H 1.07998 * 120.00687 * 179.97438 * 18 17 16 20 20 C 1.39008 * 119.99528 * 359.97438 * 18 17 16 21 21 N 1.31281 * 120.00482 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99745 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46850 * 90.00475 * 22 20 18 24 24 H 1.48504 * 109.46968 * 210.00185 * 22 20 18 25 25 H 1.48498 * 109.47347 * 329.99977 * 22 20 18 26 26 C 1.35789 * 126.09491 * 179.97438 * 14 13 11 27 27 C 1.44340 * 127.20426 * 357.22508 * 8 7 5 28 28 C 1.51576 * 113.05485 * 352.42375 * 27 8 7 29 29 C 1.49050 * 111.00141 * 120.00651 * 2 1 3 30 30 H 1.09001 * 112.31211 * 89.03728 * 29 2 1 31 31 H 1.08995 * 109.47374 * 59.87575 * 1 2 3 32 32 H 1.09006 * 109.46986 * 179.87472 * 1 2 3 33 33 H 1.09004 * 109.47134 * 299.87015 * 1 2 3 34 34 H 1.09003 * 109.92077 * 244.36889 * 3 2 1 35 35 H 1.09000 * 109.91825 * 5.47117 * 3 2 1 36 36 H 1.09007 * 110.93803 * 140.96668 * 4 3 2 37 37 H 1.09003 * 110.94355 * 264.65017 * 4 3 2 38 38 H 1.09005 * 108.13455 * 217.80333 * 7 5 4 39 39 H 1.08989 * 108.13838 * 334.31523 * 7 5 4 40 40 H 0.97005 * 119.99590 * 359.97438 * 13 11 9 41 41 H 1.08001 * 125.81224 * 359.97438 * 15 14 13 42 42 H 0.97001 * 120.00594 * 179.97438 * 21 20 18 43 43 H 1.08001 * 126.25573 * 0.02562 * 26 14 13 44 44 H 1.09002 * 108.76619 * 231.49428 * 27 8 7 45 45 H 1.09004 * 108.76304 * 113.34620 * 27 8 7 46 46 H 1.08999 * 109.05960 * 278.97318 * 28 27 8 47 47 H 1.09002 * 109.06222 * 160.05724 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3800 0.0000 4 6 2.9542 1.4990 1.2120 5 6 3.3405 0.0242 1.4600 6 1 4.0711 -0.2908 0.7150 7 6 3.9113 -0.2087 2.8265 8 7 2.9886 -0.6727 3.8297 9 6 3.5081 -0.9381 5.0447 10 8 4.6952 -0.7827 5.2442 11 6 2.6234 -1.4234 6.1451 12 8 1.4360 -1.5785 5.9457 13 7 3.1430 -1.6894 7.3599 14 6 2.3115 -2.1449 8.3941 15 6 0.9240 -2.3622 8.3075 16 7 0.4997 -2.7881 9.4701 17 7 1.5921 -2.8507 10.3444 18 6 1.5538 -3.2463 11.6586 19 1 2.4601 -3.2578 12.2458 20 6 0.3483 -3.6321 12.2333 21 7 -0.7534 -3.6186 11.5194 22 14 0.2960 -4.1697 14.0215 23 1 0.0448 -2.9888 14.8862 24 1 -0.7938 -5.1610 14.2087 25 1 1.5951 -4.7867 14.3912 26 6 2.7014 -2.4494 9.6586 27 6 1.5689 -0.8844 3.6786 28 6 1.0336 -0.3924 2.3486 29 6 2.0031 -0.6959 1.2050 30 1 2.1356 -1.7652 1.0406 31 1 -0.3634 0.5157 -0.8888 32 1 -0.3633 -1.0277 -0.0022 33 1 -0.3633 0.5118 0.8912 34 1 2.5458 1.5679 -0.9240 35 1 1.1795 2.0923 0.0977 36 1 3.8317 2.0943 0.9593 37 1 2.4374 1.9169 2.0760 38 1 4.7138 -0.9412 2.7387 39 1 4.3496 0.7264 3.1749 40 1 4.0918 -1.5659 7.5192 41 1 0.3133 -2.2062 7.4305 42 1 -1.5945 -3.8882 11.9204 43 1 3.7057 -2.3847 10.0504 44 1 1.0489 -0.3613 4.4812 45 1 1.3621 -1.9510 3.7669 46 1 0.8755 0.6846 2.4050 47 1 0.0803 -0.8806 2.1460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330221335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:19 Heat of formation + Delta-G solvation = 31.267550 kcal Electronic energy + Delta-G solvation = -30697.039923 eV Core-core repulsion = 26496.008662 eV Total energy + Delta-G solvation = -4201.031261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.53197 -41.64893 -40.79075 -39.40957 -37.42496 -35.93447 -34.97832 -34.13847 -32.33857 -32.28534 -30.43941 -29.86427 -27.70147 -27.03476 -25.95485 -24.58330 -24.14865 -22.90718 -21.69223 -21.66149 -21.22645 -19.55300 -19.39518 -18.86683 -17.93590 -17.58341 -17.45177 -16.93752 -16.70227 -16.57735 -16.22475 -15.87515 -15.66269 -15.26285 -15.17872 -15.08699 -14.91982 -14.77872 -14.36991 -14.07852 -13.87219 -13.56337 -13.50852 -13.30524 -12.95467 -12.91218 -12.81205 -12.65317 -12.33861 -12.32182 -12.12809 -12.08505 -11.96162 -11.79418 -11.59620 -11.48342 -11.06513 -10.86647 -10.34241 -10.13892 -9.79195 -9.25067 -8.60797 -8.49035 -6.26399 0.25752 1.25317 1.29003 1.41496 1.58216 1.71291 2.01004 2.10571 2.42459 2.52446 2.82893 2.90743 3.07492 3.40292 3.44811 3.56457 3.79317 3.88583 3.93666 4.16749 4.23005 4.34339 4.39855 4.46541 4.50670 4.52788 4.61884 4.65570 4.69914 4.82306 4.85100 4.87806 4.94179 4.96106 4.98369 5.05072 5.08063 5.23150 5.24362 5.27294 5.32159 5.49342 5.78110 5.91116 5.93020 6.07447 6.21499 6.40925 6.66415 6.74442 7.06536 7.41235 7.63358 8.50134 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026955 B = 0.002091 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.502048 B =13390.533335 C =14238.773963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.538 5.538 3 C 0.039 3.961 4 C -0.132 4.132 5 C -0.093 4.093 6 H 0.109 0.891 7 C 0.128 3.872 8 N -0.558 5.558 9 C 0.507 3.493 10 O -0.538 6.538 11 C 0.484 3.516 12 O -0.530 6.530 13 N -0.583 5.583 14 C -0.054 4.054 15 C -0.046 4.046 16 N -0.308 5.308 17 N -0.164 5.164 18 C -0.353 4.353 19 H 0.141 0.859 20 C -0.005 4.005 21 N -0.821 5.821 22 Si 1.019 2.981 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.245 1.245 26 C -0.076 4.076 27 C 0.118 3.882 28 C -0.148 4.148 29 C 0.080 3.920 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.422 0.578 41 H 0.178 0.822 42 H 0.278 0.722 43 H 0.186 0.814 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.932 8.588 -20.120 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.261 5.261 3 C -0.088 4.088 4 C -0.170 4.170 5 C -0.113 4.113 6 H 0.127 0.873 7 C 0.006 3.994 8 N -0.290 5.290 9 C 0.289 3.711 10 O -0.416 6.416 11 C 0.266 3.734 12 O -0.408 6.408 13 N -0.228 5.228 14 C -0.161 4.161 15 C -0.222 4.222 16 N -0.139 5.139 17 N 0.068 4.932 18 C -0.484 4.484 19 H 0.158 0.842 20 C -0.217 4.217 21 N -0.448 5.448 22 Si 0.838 3.162 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.168 1.168 26 C -0.227 4.227 27 C -0.005 4.005 28 C -0.187 4.187 29 C -0.029 4.029 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.259 0.741 41 H 0.195 0.805 42 H 0.087 0.913 43 H 0.203 0.797 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.598 7.907 -20.069 22.285 hybrid contribution 0.418 0.451 1.082 1.244 sum 6.015 8.358 -18.987 21.600 Atomic orbital electron populations 1.22664 0.87239 1.02564 1.01282 1.64250 1.08787 1.14822 1.38270 1.23013 0.97965 0.89036 0.98814 1.22877 1.00520 0.95481 0.98144 1.21538 0.97891 0.96831 0.95005 0.87274 1.20249 0.90857 1.00741 0.87530 1.46628 1.09879 1.62731 1.09735 1.19912 0.87332 0.79722 0.84115 1.90725 1.15925 1.52654 1.82336 1.20134 0.88241 0.81131 0.83877 1.90639 1.16450 1.52221 1.81533 1.42085 1.11771 1.61033 1.07912 1.17272 0.90879 1.18591 0.89331 1.24263 0.93732 1.06427 0.97753 1.78155 1.10137 1.26109 0.99542 1.44831 1.03721 1.36153 1.08482 1.20636 0.98473 1.46086 0.83201 0.84183 1.26870 0.93824 0.95197 1.05821 1.70369 0.99807 1.36228 1.38446 0.84595 0.79542 0.78386 0.73723 1.18887 1.20113 1.16834 1.21998 0.94314 1.14095 0.92286 1.21198 0.78387 1.02068 0.98821 1.22249 1.00723 1.02183 0.93519 1.22619 0.93090 0.99349 0.87807 0.88250 0.90743 0.91156 0.94449 0.89478 0.92272 0.88701 0.91937 0.90899 0.90979 0.74078 0.80541 0.91251 0.79655 0.90293 0.91675 0.91111 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 8.07 127.69 1.03 1.17 16 2 N -0.54 -7.69 5.46 -883.36 -4.83 -12.52 16 3 C 0.04 0.46 6.62 86.73 0.57 1.03 16 4 C -0.13 -1.55 5.69 31.70 0.18 -1.37 16 5 C -0.09 -1.29 2.88 -10.95 -0.03 -1.33 16 6 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 7 C 0.13 2.37 5.11 85.85 0.44 2.81 16 8 N -0.56 -13.33 3.20 -843.78 -2.70 -16.03 16 9 C 0.51 15.10 7.60 87.22 0.66 15.76 16 10 O -0.54 -17.12 16.12 -3.30 -0.05 -17.17 16 11 C 0.48 17.07 7.70 87.22 0.67 17.74 16 12 O -0.53 -20.50 9.84 -3.41 -0.03 -20.53 16 13 N -0.58 -21.43 5.45 -305.34 -1.66 -23.09 16 14 C -0.05 -2.48 6.90 37.82 0.26 -2.22 16 15 C -0.05 -2.42 10.84 85.44 0.93 -1.49 16 16 N -0.31 -18.08 10.39 -56.44 -0.59 -18.67 16 17 N -0.16 -8.97 3.73 -189.97 -0.71 -9.68 16 18 C -0.35 -18.44 10.25 84.02 0.86 -17.58 16 19 H 0.14 6.36 7.83 -2.91 -0.02 6.34 16 20 C -0.01 -0.26 5.50 84.96 0.47 0.21 16 21 N -0.82 -46.48 11.81 21.66 0.26 -46.23 16 22 Si 1.02 38.01 29.55 68.60 2.03 40.04 16 23 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 24 H -0.28 -10.19 7.11 99.48 0.71 -9.49 16 25 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 26 C -0.08 -3.52 11.50 83.41 0.96 -2.56 16 27 C 0.12 2.76 4.66 86.31 0.40 3.16 16 28 C -0.15 -2.53 3.69 30.12 0.11 -2.42 16 29 C 0.08 1.22 3.76 44.83 0.17 1.39 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.89 8.02 -2.38 -0.02 0.87 16 33 H 0.04 0.47 5.97 -2.38 -0.01 0.46 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.65 7.60 -2.39 -0.02 0.63 16 36 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.06 0.87 7.16 -2.39 -0.02 0.86 16 38 H 0.07 1.38 7.97 -2.38 -0.02 1.36 16 39 H 0.07 1.35 7.78 -2.39 -0.02 1.33 16 40 H 0.42 13.18 8.29 -92.70 -0.77 12.41 16 41 H 0.18 8.98 5.92 -2.91 -0.02 8.96 16 42 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 43 H 0.19 6.89 8.06 -2.91 -0.02 6.87 16 44 H 0.08 2.19 6.29 -2.39 -0.02 2.17 16 45 H 0.06 1.70 7.42 -2.39 -0.02 1.68 16 46 H 0.07 1.20 5.84 -2.39 -0.01 1.18 16 47 H 0.09 1.49 6.71 -2.39 -0.02 1.47 16 Total: -1.00 -69.53 367.50 -0.35 -69.88 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: 0.25 Total: 39.71 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 7.68 Total: 14.30 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -10.23 Total: -126.23 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -0.09 Total: -37.70 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -69.53 -0.35 -69.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330221335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.145 kcal (2) G-P(sol) polarization free energy of solvation -69.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds