Wall clock time and date at job start Wed Apr 1 2020 05:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47821 * 111.00175 * 2 1 4 4 C 1.54792 * 107.03583 * 234.99611 * 3 2 1 5 5 C 1.54467 * 101.92460 * 337.18042 * 4 3 2 6 6 H 1.08998 * 109.49803 * 283.32980 * 5 4 3 7 7 C 1.49897 * 112.95123 * 161.87657 * 5 4 3 8 8 N 1.43986 * 116.18419 * 263.92436 * 7 5 4 9 9 C 1.34775 * 116.40010 * 182.79271 * 8 7 5 10 10 O 1.21369 * 120.00012 * 359.97401 * 9 8 7 11 11 C 1.49308 * 120.00215 * 179.97438 * 9 8 7 12 12 O 1.21401 * 119.99993 * 0.02562 * 11 9 8 13 13 N 1.34775 * 120.00215 * 179.97438 * 11 9 8 14 14 C 1.40291 * 120.00076 * 179.97438 * 13 11 9 15 15 C 1.40718 * 126.09977 * 359.69651 * 14 13 11 16 16 N 1.30874 * 108.37368 * 179.80796 * 15 14 13 17 17 N 1.40066 * 108.43943 * 0.44342 * 16 15 14 18 18 C 1.37288 * 126.05679 * 179.69183 * 17 16 15 19 19 H 1.08003 * 120.00032 * 180.02562 * 18 17 16 20 20 C 1.39009 * 120.00151 * 0.02562 * 18 17 16 21 21 N 1.31282 * 120.00247 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99971 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46959 * 60.00483 * 22 20 18 24 24 H 1.48506 * 109.46800 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47032 * 300.00093 * 22 20 18 26 26 C 1.35786 * 126.10021 * 179.97438 * 14 13 11 27 27 C 1.44343 * 127.20194 * 2.76509 * 8 7 5 28 28 C 1.51582 * 113.05019 * 7.59204 * 27 8 7 29 29 C 1.49046 * 110.99662 * 239.99220 * 2 1 3 30 30 H 1.09001 * 112.31156 * 270.94550 * 29 2 1 31 31 H 1.08999 * 109.47121 * 59.86783 * 1 2 3 32 32 H 1.09001 * 109.47293 * 179.87171 * 1 2 3 33 33 H 1.09003 * 109.47064 * 299.86897 * 1 2 3 34 34 H 1.09006 * 109.92122 * 115.64681 * 3 2 1 35 35 H 1.09004 * 109.91905 * 354.34194 * 3 2 1 36 36 H 1.09006 * 110.93874 * 219.02644 * 4 3 2 37 37 H 1.09001 * 110.94030 * 95.33880 * 4 3 2 38 38 H 1.09003 * 108.13511 * 25.66267 * 7 5 4 39 39 H 1.08996 * 108.13901 * 142.17494 * 7 5 4 40 40 H 0.97005 * 120.00041 * 359.97438 * 13 11 9 41 41 H 1.08003 * 125.81271 * 359.97438 * 15 14 13 42 42 H 0.96995 * 120.00208 * 179.97438 * 21 20 18 43 43 H 1.08005 * 126.24920 * 359.97438 * 26 14 13 44 44 H 1.08996 * 108.76783 * 246.66942 * 27 8 7 45 45 H 1.08999 * 108.76152 * 128.51412 * 27 8 7 46 46 H 1.09001 * 109.05877 * 199.93511 * 28 27 8 47 47 H 1.09002 * 109.00660 * 80.97922 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3800 0.0000 4 6 2.9539 1.4991 -1.2123 5 6 3.3403 0.0243 -1.4603 6 1 4.0711 -0.2906 -0.7155 7 6 3.9109 -0.2087 -2.8267 8 7 2.9882 -0.6730 -3.8299 9 6 3.5078 -0.9395 -5.0445 10 8 4.6948 -0.7838 -5.2443 11 6 2.6233 -1.4264 -6.1445 12 8 1.4359 -1.5817 -5.9448 13 7 3.1428 -1.6924 -7.3593 14 6 2.3117 -2.1503 -8.3926 15 6 0.9267 -2.3818 -8.3018 16 7 0.5008 -2.7985 -9.4670 17 7 1.5928 -2.8595 -10.3420 18 6 1.5546 -3.2567 -11.6556 19 1 2.4606 -3.2667 -12.2433 20 6 0.3497 -3.6460 -12.2292 21 7 -0.7518 -3.6334 -11.5150 22 14 0.2976 -4.1859 -14.0168 23 1 1.1814 -5.3645 -14.2039 24 1 -1.0951 -4.5475 -14.3842 25 1 0.7649 -3.0742 -14.8834 26 6 2.7013 -2.4543 -9.6574 27 6 1.5686 -0.8853 -3.6785 28 6 1.0333 -0.3930 -2.3485 29 6 2.0031 -0.6959 -1.2050 30 1 2.1358 -1.7652 -1.0404 31 1 -0.3633 0.5159 -0.8888 32 1 -0.3634 -1.0277 -0.0023 33 1 -0.3633 0.5118 0.8912 34 1 2.5460 1.5678 0.9239 35 1 1.1798 2.0922 -0.1010 36 1 3.8314 2.0945 -0.9598 37 1 2.4368 1.9169 -2.0761 38 1 4.3488 0.7266 -3.1755 39 1 4.7136 -0.9408 -2.7390 40 1 4.0913 -1.5672 -7.5192 41 1 0.3182 -2.2373 -7.4212 42 1 -1.5925 -3.9048 -11.9154 43 1 3.7052 -2.3872 -10.0500 44 1 1.3621 -1.9519 -3.7665 45 1 1.0484 -0.3625 -4.4811 46 1 0.0801 -0.8813 -2.1457 47 1 0.8760 0.6841 -2.4059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330221338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:27 Heat of formation + Delta-G solvation = 53.971697 kcal Electronic energy + Delta-G solvation = -30695.945193 eV Core-core repulsion = 26495.898458 eV Total energy + Delta-G solvation = -4200.046735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.43343 -40.19863 -39.43015 -37.97484 -36.33191 -34.33509 -33.42232 -33.15815 -31.47245 -30.34712 -29.67683 -28.09722 -26.76821 -25.61131 -24.65256 -23.70363 -23.02227 -21.10314 -21.07446 -20.20980 -19.49338 -18.69876 -17.83318 -17.48805 -16.66160 -16.45261 -15.96841 -15.90486 -15.51945 -15.25728 -15.03074 -14.60124 -14.35393 -14.20049 -14.03125 -13.73815 -13.67553 -13.32924 -13.20320 -13.04249 -12.94394 -12.68513 -12.08528 -11.93538 -11.74649 -11.66366 -11.57687 -11.42418 -11.29008 -11.16387 -11.07339 -10.91176 -10.85631 -10.78053 -10.59262 -10.29005 -9.24710 -8.99324 -8.87788 -8.75245 -8.55360 -8.14818 -6.79178 -6.61989 -4.29340 1.62933 2.51285 2.92931 3.02408 3.06144 3.28508 3.54167 3.65436 3.68417 3.84203 4.11906 4.19973 4.35036 4.44530 4.53339 4.69954 4.72314 4.88226 4.92299 4.96608 4.98071 5.03822 5.06044 5.14675 5.26763 5.37339 5.43450 5.47988 5.50578 5.60242 5.69278 5.79176 5.84219 5.92395 6.02392 6.18411 6.34079 6.48182 6.52810 6.66645 6.73598 6.86367 6.87491 7.05888 7.14891 7.70345 7.81524 8.08373 8.16590 8.46819 8.67772 9.29417 9.58057 10.33736 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.002090 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.270307 B =13391.122823 C =14239.531118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.531 5.531 3 C 0.039 3.961 4 C -0.137 4.137 5 C -0.098 4.098 6 H 0.095 0.905 7 C 0.130 3.870 8 N -0.572 5.572 9 C 0.502 3.498 10 O -0.528 6.528 11 C 0.483 3.517 12 O -0.518 6.518 13 N -0.583 5.583 14 C -0.069 4.069 15 C -0.026 4.026 16 N -0.261 5.261 17 N -0.138 5.138 18 C -0.322 4.322 19 H 0.118 0.882 20 C 0.046 3.954 21 N -0.768 5.768 22 Si 0.936 3.064 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.266 1.266 26 C -0.078 4.078 27 C 0.115 3.885 28 C -0.159 4.159 29 C 0.079 3.921 30 H 0.103 0.897 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.409 0.591 41 H 0.178 0.822 42 H 0.276 0.724 43 H 0.149 0.851 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.249 7.904 19.245 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.254 5.254 3 C -0.089 4.089 4 C -0.175 4.175 5 C -0.117 4.117 6 H 0.113 0.887 7 C 0.007 3.993 8 N -0.305 5.305 9 C 0.285 3.715 10 O -0.404 6.404 11 C 0.264 3.736 12 O -0.396 6.396 13 N -0.225 5.225 14 C -0.175 4.175 15 C -0.202 4.202 16 N -0.092 5.092 17 N 0.095 4.905 18 C -0.454 4.454 19 H 0.135 0.865 20 C -0.171 4.171 21 N -0.394 5.394 22 Si 0.759 3.241 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.191 1.191 26 C -0.229 4.229 27 C -0.008 4.008 28 C -0.198 4.198 29 C -0.029 4.029 30 H 0.121 0.879 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.244 0.756 41 H 0.195 0.805 42 H 0.087 0.913 43 H 0.166 0.834 44 H 0.095 0.905 45 H 0.116 0.884 46 H 0.105 0.895 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.881 7.209 19.136 20.814 hybrid contribution 0.906 0.582 -1.038 1.496 sum 4.787 7.791 18.098 20.277 Atomic orbital electron populations 1.22634 0.87732 1.02394 1.00878 1.64227 1.08230 1.14098 1.38876 1.22971 0.97777 0.89598 0.98518 1.22902 0.99986 0.96155 0.98474 1.21552 0.97909 0.96059 0.96223 0.88668 1.20044 0.91303 1.00740 0.87176 1.46557 1.09379 1.64306 1.10295 1.20447 0.87989 0.79178 0.83888 1.90724 1.15885 1.51703 1.82094 1.19564 0.88070 0.82329 0.83630 1.90632 1.15475 1.52359 1.81158 1.42146 1.11550 1.60390 1.08403 1.17244 0.91581 1.20194 0.88447 1.24138 0.92292 1.05668 0.98118 1.78260 1.08101 1.24662 0.98144 1.44550 1.03270 1.34676 1.07974 1.19876 0.97096 1.45357 0.83084 0.86488 1.25665 0.94675 0.95924 1.00855 1.70192 0.98979 1.34187 1.36052 0.85874 0.78297 0.79558 0.80325 1.19077 1.20092 1.19093 1.21308 0.93498 1.15677 0.92439 1.21298 0.78841 1.02983 0.97632 1.22325 1.00353 1.02123 0.94956 1.22650 0.93008 0.99311 0.87902 0.87886 0.94397 0.91133 0.91612 0.90291 0.92707 0.90262 0.90994 0.91294 0.91065 0.75638 0.80550 0.91297 0.83379 0.90493 0.88406 0.89539 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 8.06 60.06 0.48 0.57 16 2 N -0.53 -4.37 5.46 -230.56 -1.26 -5.63 16 3 C 0.04 0.28 6.63 -2.37 -0.02 0.26 16 4 C -0.14 -0.98 5.69 -25.02 -0.14 -1.12 16 5 C -0.10 -0.79 2.88 -90.86 -0.26 -1.06 16 6 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 7 C 0.13 1.33 5.11 -6.92 -0.04 1.29 16 8 N -0.57 -7.14 3.20 -180.64 -0.58 -7.71 16 9 C 0.50 7.70 7.60 -11.65 -0.09 7.61 16 10 O -0.53 -8.76 16.12 5.48 0.09 -8.67 16 11 C 0.48 8.56 7.70 -11.65 -0.09 8.47 16 12 O -0.52 -9.85 9.84 5.45 0.05 -9.80 16 13 N -0.58 -10.87 5.45 -10.46 -0.06 -10.92 16 14 C -0.07 -1.56 6.90 -83.93 -0.58 -2.14 16 15 C -0.03 -0.67 10.84 -17.02 -0.18 -0.86 16 16 N -0.26 -7.39 10.39 30.81 0.32 -7.07 16 17 N -0.14 -3.72 3.73 -11.40 -0.04 -3.76 16 18 C -0.32 -8.36 10.25 -14.82 -0.15 -8.51 16 19 H 0.12 2.70 7.83 -52.48 -0.41 2.29 16 20 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 21 N -0.77 -21.01 11.81 55.50 0.66 -20.35 16 22 Si 0.94 18.57 29.55 -169.99 -5.02 13.55 16 23 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 24 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 26 C -0.08 -1.81 11.50 -16.38 -0.19 -2.00 16 27 C 0.12 1.37 4.66 -5.91 -0.03 1.34 16 28 C -0.16 -1.45 3.69 -27.47 -0.10 -1.55 16 29 C 0.08 0.68 3.75 -66.01 -0.25 0.43 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.27 5.99 -51.93 -0.31 -0.04 16 32 H 0.07 0.50 8.01 -51.93 -0.42 0.08 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.37 7.60 -51.93 -0.39 -0.03 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.58 7.16 -51.93 -0.37 0.21 16 38 H 0.07 0.72 7.79 -51.93 -0.40 0.31 16 39 H 0.07 0.75 7.97 -51.93 -0.41 0.33 16 40 H 0.41 6.64 8.29 -40.82 -0.34 6.30 16 41 H 0.18 4.30 5.92 -52.48 -0.31 3.99 16 42 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.15 2.90 8.06 -52.48 -0.42 2.48 16 44 H 0.08 1.00 7.41 -51.93 -0.39 0.61 16 45 H 0.10 1.34 6.29 -51.93 -0.33 1.01 16 46 H 0.09 0.73 6.71 -51.93 -0.35 0.39 16 47 H 0.07 0.62 5.85 -51.93 -0.30 0.32 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -31.27 367.51 -8.44 -39.71 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.41 Total: 11.30 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -1.73 Total: 3.83 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.96 Total: -55.45 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.14 Total: -18.47 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.27 -8.44 -39.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330221338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.681 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds