Wall clock time and date at job start Wed Apr 1 2020 05:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47821 * 111.00175 * 2 1 4 4 C 1.54792 * 107.03583 * 234.99611 * 3 2 1 5 5 C 1.54467 * 101.92460 * 337.18042 * 4 3 2 6 6 H 1.08998 * 109.49803 * 283.32980 * 5 4 3 7 7 C 1.49897 * 112.95123 * 161.87657 * 5 4 3 8 8 N 1.43986 * 116.18419 * 263.92436 * 7 5 4 9 9 C 1.34775 * 116.40010 * 182.79271 * 8 7 5 10 10 O 1.21369 * 120.00012 * 359.97401 * 9 8 7 11 11 C 1.49308 * 120.00215 * 179.97438 * 9 8 7 12 12 O 1.21401 * 119.99993 * 0.02562 * 11 9 8 13 13 N 1.34775 * 120.00215 * 179.97438 * 11 9 8 14 14 C 1.40291 * 120.00076 * 179.97438 * 13 11 9 15 15 C 1.40718 * 126.09977 * 359.69651 * 14 13 11 16 16 N 1.30874 * 108.37368 * 179.80796 * 15 14 13 17 17 N 1.40066 * 108.43943 * 0.44342 * 16 15 14 18 18 C 1.37288 * 126.05679 * 179.69183 * 17 16 15 19 19 H 1.08003 * 120.00032 * 180.02562 * 18 17 16 20 20 C 1.39009 * 120.00151 * 0.02562 * 18 17 16 21 21 N 1.31282 * 120.00247 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99971 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46959 * 60.00483 * 22 20 18 24 24 H 1.48506 * 109.46800 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47032 * 300.00093 * 22 20 18 26 26 C 1.35786 * 126.10021 * 179.97438 * 14 13 11 27 27 C 1.44343 * 127.20194 * 2.76509 * 8 7 5 28 28 C 1.51582 * 113.05019 * 7.59204 * 27 8 7 29 29 C 1.49046 * 110.99662 * 239.99220 * 2 1 3 30 30 H 1.09001 * 112.31156 * 270.94550 * 29 2 1 31 31 H 1.08999 * 109.47121 * 59.86783 * 1 2 3 32 32 H 1.09001 * 109.47293 * 179.87171 * 1 2 3 33 33 H 1.09003 * 109.47064 * 299.86897 * 1 2 3 34 34 H 1.09006 * 109.92122 * 115.64681 * 3 2 1 35 35 H 1.09004 * 109.91905 * 354.34194 * 3 2 1 36 36 H 1.09006 * 110.93874 * 219.02644 * 4 3 2 37 37 H 1.09001 * 110.94030 * 95.33880 * 4 3 2 38 38 H 1.09003 * 108.13511 * 25.66267 * 7 5 4 39 39 H 1.08996 * 108.13901 * 142.17494 * 7 5 4 40 40 H 0.97005 * 120.00041 * 359.97438 * 13 11 9 41 41 H 1.08003 * 125.81271 * 359.97438 * 15 14 13 42 42 H 0.96995 * 120.00208 * 179.97438 * 21 20 18 43 43 H 1.08005 * 126.24920 * 359.97438 * 26 14 13 44 44 H 1.08996 * 108.76783 * 246.66942 * 27 8 7 45 45 H 1.08999 * 108.76152 * 128.51412 * 27 8 7 46 46 H 1.09001 * 109.05877 * 199.93511 * 28 27 8 47 47 H 1.09002 * 109.00660 * 80.97922 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3800 0.0000 4 6 2.9539 1.4991 -1.2123 5 6 3.3403 0.0243 -1.4603 6 1 4.0711 -0.2906 -0.7155 7 6 3.9109 -0.2087 -2.8267 8 7 2.9882 -0.6730 -3.8299 9 6 3.5078 -0.9395 -5.0445 10 8 4.6948 -0.7838 -5.2443 11 6 2.6233 -1.4264 -6.1445 12 8 1.4359 -1.5817 -5.9448 13 7 3.1428 -1.6924 -7.3593 14 6 2.3117 -2.1503 -8.3926 15 6 0.9267 -2.3818 -8.3018 16 7 0.5008 -2.7985 -9.4670 17 7 1.5928 -2.8595 -10.3420 18 6 1.5546 -3.2567 -11.6556 19 1 2.4606 -3.2667 -12.2433 20 6 0.3497 -3.6460 -12.2292 21 7 -0.7518 -3.6334 -11.5150 22 14 0.2976 -4.1859 -14.0168 23 1 1.1814 -5.3645 -14.2039 24 1 -1.0951 -4.5475 -14.3842 25 1 0.7649 -3.0742 -14.8834 26 6 2.7013 -2.4543 -9.6574 27 6 1.5686 -0.8853 -3.6785 28 6 1.0333 -0.3930 -2.3485 29 6 2.0031 -0.6959 -1.2050 30 1 2.1358 -1.7652 -1.0404 31 1 -0.3633 0.5159 -0.8888 32 1 -0.3634 -1.0277 -0.0023 33 1 -0.3633 0.5118 0.8912 34 1 2.5460 1.5678 0.9239 35 1 1.1798 2.0922 -0.1010 36 1 3.8314 2.0945 -0.9598 37 1 2.4368 1.9169 -2.0761 38 1 4.3488 0.7266 -3.1755 39 1 4.7136 -0.9408 -2.7390 40 1 4.0913 -1.5672 -7.5192 41 1 0.3182 -2.2373 -7.4212 42 1 -1.5925 -3.9048 -11.9154 43 1 3.7052 -2.3872 -10.0500 44 1 1.3621 -1.9519 -3.7665 45 1 1.0484 -0.3625 -4.4811 46 1 0.0801 -0.8813 -2.1457 47 1 0.8760 0.6841 -2.4059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330221338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:25 Heat of formation + Delta-G solvation = 31.293264 kcal Electronic energy + Delta-G solvation = -30696.928604 eV Core-core repulsion = 26495.898458 eV Total energy + Delta-G solvation = -4201.030146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.53192 -41.64865 -40.79064 -39.40926 -37.42516 -35.93431 -34.97800 -34.13834 -32.33885 -32.28578 -30.44002 -29.86365 -27.70103 -27.03373 -25.95374 -24.58290 -24.14796 -22.90658 -21.69047 -21.66106 -21.22629 -19.55278 -19.39473 -18.86678 -17.93547 -17.58391 -17.44626 -16.93804 -16.70217 -16.57791 -16.22508 -15.87508 -15.66730 -15.26599 -15.17769 -15.08736 -14.91564 -14.77851 -14.36959 -14.07759 -13.87291 -13.56392 -13.50286 -13.30427 -12.94168 -12.91093 -12.80418 -12.65402 -12.33852 -12.32142 -12.13623 -12.12423 -11.95483 -11.79128 -11.59651 -11.48339 -11.05165 -10.86488 -10.34216 -10.13830 -9.79252 -9.25154 -8.60780 -8.48807 -6.26294 0.25781 1.25283 1.30225 1.41431 1.56740 1.71800 2.01039 2.11002 2.42459 2.52467 2.82888 2.90765 3.07618 3.40300 3.44777 3.56360 3.79358 3.88513 3.93725 4.16810 4.22917 4.34464 4.39859 4.46604 4.50735 4.52778 4.61842 4.65601 4.69876 4.82176 4.85104 4.87787 4.94132 4.96083 4.98281 5.05034 5.08080 5.23146 5.24342 5.27331 5.32163 5.49315 5.78098 5.91074 5.92950 6.07451 6.21512 6.40955 6.66459 6.74455 7.06551 7.41268 7.63371 8.50149 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.002090 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.270307 B =13391.122823 C =14239.531118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.538 5.538 3 C 0.039 3.961 4 C -0.132 4.132 5 C -0.094 4.094 6 H 0.109 0.891 7 C 0.128 3.872 8 N -0.558 5.558 9 C 0.507 3.493 10 O -0.538 6.538 11 C 0.484 3.516 12 O -0.530 6.530 13 N -0.583 5.583 14 C -0.055 4.055 15 C -0.046 4.046 16 N -0.308 5.308 17 N -0.163 5.163 18 C -0.354 4.354 19 H 0.141 0.859 20 C -0.005 4.005 21 N -0.821 5.821 22 Si 1.019 2.981 23 H -0.254 1.254 24 H -0.277 1.277 25 H -0.254 1.254 26 C -0.076 4.076 27 C 0.118 3.882 28 C -0.148 4.148 29 C 0.080 3.920 30 H 0.100 0.900 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.422 0.578 41 H 0.178 0.822 42 H 0.278 0.722 43 H 0.186 0.814 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.892 8.612 20.103 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.261 5.261 3 C -0.088 4.088 4 C -0.170 4.170 5 C -0.113 4.113 6 H 0.127 0.873 7 C 0.006 3.994 8 N -0.290 5.290 9 C 0.289 3.711 10 O -0.416 6.416 11 C 0.266 3.734 12 O -0.408 6.408 13 N -0.228 5.228 14 C -0.161 4.161 15 C -0.222 4.222 16 N -0.140 5.140 17 N 0.068 4.932 18 C -0.485 4.485 19 H 0.158 0.842 20 C -0.217 4.217 21 N -0.448 5.448 22 Si 0.837 3.163 23 H -0.178 1.178 24 H -0.202 1.202 25 H -0.178 1.178 26 C -0.227 4.227 27 C -0.005 4.005 28 C -0.187 4.187 29 C -0.029 4.029 30 H 0.117 0.883 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.259 0.741 41 H 0.195 0.805 42 H 0.088 0.912 43 H 0.203 0.797 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.111 0.889 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.551 7.940 20.050 22.267 hybrid contribution 0.438 0.438 -1.083 1.247 sum 5.988 8.378 18.967 21.582 Atomic orbital electron populations 1.22663 0.87237 1.02552 1.01286 1.64249 1.08788 1.14825 1.38265 1.23019 0.97958 0.89035 0.98810 1.22882 1.00531 0.95477 0.98150 1.21537 0.97895 0.96836 0.95004 0.87275 1.20248 0.90857 1.00736 0.87536 1.46629 1.09882 1.62704 1.09757 1.19913 0.87331 0.79724 0.84115 1.90725 1.15930 1.52678 1.82313 1.20133 0.88237 0.81137 0.83878 1.90639 1.16446 1.52245 1.81517 1.42083 1.11808 1.60964 1.07940 1.17271 0.91009 1.18520 0.89291 1.24263 0.93798 1.06439 0.97674 1.78155 1.10097 1.26299 0.99402 1.44821 1.03723 1.36070 1.08539 1.20599 0.98534 1.46026 0.83312 0.84193 1.26871 0.93809 0.95187 1.05824 1.70364 0.99821 1.36117 1.38531 0.84657 0.78269 0.79545 0.73786 1.17778 1.20191 1.17794 1.21995 0.94350 1.14001 0.92370 1.21199 0.78388 1.02066 0.98821 1.22251 1.00725 1.02178 0.93517 1.22619 0.93089 0.99349 0.87810 0.88252 0.94461 0.91155 0.90741 0.89441 0.92277 0.88702 0.91941 0.90981 0.90900 0.74081 0.80538 0.91241 0.79661 0.91671 0.90302 0.88856 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 8.06 127.69 1.03 1.17 16 2 N -0.54 -7.69 5.46 -883.35 -4.83 -12.52 16 3 C 0.04 0.46 6.63 86.74 0.57 1.03 16 4 C -0.13 -1.56 5.69 31.70 0.18 -1.38 16 5 C -0.09 -1.30 2.88 -10.95 -0.03 -1.33 16 6 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 7 C 0.13 2.37 5.11 85.85 0.44 2.81 16 8 N -0.56 -13.34 3.20 -843.78 -2.70 -16.04 16 9 C 0.51 15.11 7.60 87.23 0.66 15.77 16 10 O -0.54 -17.13 16.12 -3.31 -0.05 -17.18 16 11 C 0.48 17.08 7.70 87.23 0.67 17.75 16 12 O -0.53 -20.51 9.84 -3.41 -0.03 -20.54 16 13 N -0.58 -21.44 5.45 -305.34 -1.66 -23.11 16 14 C -0.05 -2.49 6.90 37.82 0.26 -2.23 16 15 C -0.05 -2.42 10.84 85.44 0.93 -1.49 16 16 N -0.31 -18.09 10.39 -56.44 -0.59 -18.68 16 17 N -0.16 -8.96 3.73 -189.98 -0.71 -9.67 16 18 C -0.35 -18.49 10.25 84.02 0.86 -17.63 16 19 H 0.14 6.34 7.83 -2.91 -0.02 6.32 16 20 C 0.00 -0.24 5.50 84.96 0.47 0.22 16 21 N -0.82 -46.48 11.81 21.66 0.26 -46.22 16 22 Si 1.02 37.97 29.55 68.60 2.03 40.00 16 23 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 24 H -0.28 -10.22 7.11 99.48 0.71 -9.51 16 25 H -0.25 -8.87 7.11 99.48 0.71 -8.17 16 26 C -0.08 -3.53 11.50 83.41 0.96 -2.57 16 27 C 0.12 2.76 4.66 86.32 0.40 3.16 16 28 C -0.15 -2.53 3.69 30.12 0.11 -2.42 16 29 C 0.08 1.22 3.75 44.83 0.17 1.39 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 0.47 5.99 -2.39 -0.01 0.46 16 32 H 0.07 0.89 8.01 -2.39 -0.02 0.87 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.06 0.65 7.60 -2.39 -0.02 0.63 16 36 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.06 0.87 7.16 -2.39 -0.02 0.86 16 38 H 0.07 1.35 7.79 -2.39 -0.02 1.33 16 39 H 0.07 1.38 7.97 -2.39 -0.02 1.36 16 40 H 0.42 13.19 8.29 -92.70 -0.77 12.42 16 41 H 0.18 8.98 5.92 -2.91 -0.02 8.96 16 42 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 43 H 0.19 6.89 8.06 -2.91 -0.02 6.87 16 44 H 0.06 1.70 7.41 -2.39 -0.02 1.68 16 45 H 0.08 2.19 6.29 -2.39 -0.02 2.17 16 46 H 0.09 1.49 6.71 -2.39 -0.02 1.48 16 47 H 0.07 1.20 5.85 -2.39 -0.01 1.18 16 Total: -1.00 -69.51 367.51 -0.35 -69.86 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: 0.25 Total: 39.84 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 7.68 Total: 14.27 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -10.23 Total: -126.24 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.09 Total: -37.72 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -69.51 -0.35 -69.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330221338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.150 kcal (2) G-P(sol) polarization free energy of solvation -69.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds