Wall clock time and date at job start Wed Apr 1 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00481 * 2 1 4 4 C 1.50703 * 109.46913 * 66.04487 * 3 2 1 5 5 O 1.21294 * 119.99863 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00088 * 180.02562 * 4 3 2 7 7 C 1.37090 * 120.00231 * 179.97438 * 6 4 3 8 8 H 1.08000 * 119.99889 * 0.02562 * 7 6 4 9 9 C 1.38953 * 120.00033 * 179.97438 * 7 6 4 10 10 N 1.31406 * 119.99953 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99809 * 180.02562 * 9 7 6 12 12 H 1.48489 * 109.47167 * 59.99942 * 11 9 7 13 13 H 1.48495 * 109.46859 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46776 * 299.99762 * 11 9 7 15 15 C 1.46899 * 111.00206 * 236.04453 * 2 1 3 16 16 C 1.53045 * 109.46239 * 298.95798 * 15 2 1 17 17 C 1.53192 * 109.31307 * 181.36738 * 16 15 2 18 18 N 1.46924 * 108.77634 * 305.36282 * 17 16 15 19 19 C 1.34776 * 120.62941 * 233.58282 * 18 17 16 20 20 O 1.21473 * 119.99688 * 184.18374 * 19 18 17 21 21 C 1.48533 * 120.00038 * 3.90825 * 19 18 17 22 22 N 1.32461 * 119.19041 * 315.38350 * 21 19 18 23 23 C 1.32107 * 120.77219 * 179.71711 * 22 21 19 24 24 C 1.38808 * 119.16156 * 0.54807 * 23 22 21 25 25 C 1.38800 * 118.50653 * 359.72372 * 24 23 22 26 26 N 1.32112 * 119.16635 * 0.02562 * 25 24 23 27 27 C 1.46921 * 118.73531 * 53.86492 * 18 17 16 28 28 C 1.53048 * 109.44976 * 59.01504 * 15 2 1 29 29 H 1.08993 * 109.47515 * 183.95032 * 1 2 3 30 30 H 1.08999 * 109.47238 * 303.95705 * 1 2 3 31 31 H 1.09002 * 109.46458 * 63.95049 * 1 2 3 32 32 H 1.08994 * 109.47441 * 186.04309 * 3 2 1 33 33 H 1.08998 * 109.47222 * 306.04917 * 3 2 1 34 34 H 0.97009 * 119.99712 * 359.97438 * 6 4 3 35 35 H 0.97006 * 119.99606 * 179.97438 * 10 9 7 36 36 H 1.08994 * 109.46557 * 178.98345 * 15 2 1 37 37 H 1.09005 * 109.49504 * 61.41503 * 16 15 2 38 38 H 1.08999 * 109.52471 * 301.33711 * 16 15 2 39 39 H 1.09004 * 109.58353 * 185.57874 * 17 16 15 40 40 H 1.08996 * 109.70202 * 65.22598 * 17 16 15 41 41 H 1.08001 * 120.42262 * 180.26907 * 23 22 21 42 42 H 1.08002 * 120.74558 * 179.75407 * 24 23 22 43 43 H 1.08000 * 120.41965 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.59230 * 65.92712 * 27 18 17 45 45 H 1.09006 * 109.58701 * 186.34587 * 27 18 17 46 46 H 1.08996 * 109.49677 * 298.57800 * 28 15 2 47 47 H 1.09001 * 109.49017 * 58.67008 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0047 1.4455 2.1408 6 7 2.0182 3.3201 1.5234 7 6 1.6916 3.9350 2.7043 8 1 1.1292 3.3991 3.4547 9 6 2.0850 5.2473 2.9364 10 7 2.7706 5.8988 2.0241 11 14 1.6406 6.0848 4.5460 12 1 2.2322 5.3274 5.6779 13 1 2.1724 7.4713 4.5457 14 1 0.1634 6.1217 4.6933 15 6 1.9955 -0.7660 -1.1375 16 6 1.5260 -2.2190 -1.0349 17 6 2.1048 -3.0223 -2.2039 18 7 1.7387 -2.3573 -3.4618 19 6 1.1177 -3.0401 -4.4440 20 8 0.8883 -2.5002 -5.5077 21 6 0.7193 -4.4546 -4.2279 22 7 1.5765 -5.2871 -3.6562 23 6 1.2527 -6.5501 -3.4439 24 6 0.0014 -7.0032 -3.8386 25 6 -0.8692 -6.1046 -4.4396 26 7 -0.4824 -4.8539 -4.6169 27 6 2.0680 -0.9355 -3.6311 28 6 1.4845 -0.1542 -2.4441 29 1 -0.3634 -1.0251 0.0708 30 1 -0.3633 0.5740 0.8524 31 1 -0.3632 0.4513 -0.9233 32 1 3.0798 1.3443 -0.1082 33 1 1.5612 1.9273 -0.8309 34 1 2.5236 3.8013 0.8496 35 1 3.0449 6.8150 2.1860 36 1 3.0849 -0.7346 -1.1235 37 1 0.4372 -2.2531 -1.0738 38 1 1.8700 -2.6474 -0.0935 39 1 1.6949 -4.0322 -2.1917 40 1 3.1904 -3.0675 -2.1169 41 1 1.9544 -7.2229 -2.9734 42 1 -0.2884 -8.0316 -3.6812 43 1 -1.8504 -6.4238 -4.7584 44 1 3.1506 -0.8117 -3.6570 45 1 1.6338 -0.5681 -4.5610 46 1 0.3962 -0.2078 -2.4697 47 1 1.7996 0.8875 -2.5055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331059045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:59 Heat of formation + Delta-G solvation = -15.724725 kcal Electronic energy + Delta-G solvation = -30302.825592 eV Core-core repulsion = 26099.756593 eV Total energy + Delta-G solvation = -4203.068999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.44568 -41.13703 -40.30715 -39.14518 -36.95721 -35.84563 -34.92367 -33.56944 -33.26713 -32.44552 -31.99512 -29.38759 -27.61047 -26.82142 -25.98094 -25.59875 -24.27018 -23.98148 -21.87657 -20.94599 -20.38737 -19.80169 -19.05288 -18.55296 -17.94322 -17.63049 -16.91675 -16.66474 -16.55314 -16.49533 -16.24419 -15.92043 -15.73916 -15.42858 -15.20528 -15.16818 -15.00611 -14.72901 -14.50766 -14.30125 -13.93292 -13.73434 -13.49074 -13.18964 -13.08108 -12.87002 -12.72486 -12.43989 -12.38123 -12.35044 -12.17697 -12.11836 -11.97180 -11.77002 -11.56578 -11.42757 -11.12771 -10.67933 -10.39078 -10.24881 -9.98004 -9.87343 -9.12561 -8.44531 -5.92861 -0.52281 0.05184 1.29111 1.40467 1.42021 1.52861 1.56718 2.08397 2.29319 2.58900 2.71701 2.83950 3.22347 3.22772 3.43099 3.64439 3.68176 3.77975 3.84497 3.99660 4.05553 4.10118 4.21714 4.26003 4.34495 4.36371 4.42151 4.52333 4.54293 4.63188 4.68879 4.75102 4.79586 4.80938 4.82163 4.95389 5.07382 5.16215 5.28317 5.29452 5.40962 5.42711 5.85971 5.90996 6.06215 6.10582 6.23237 6.63305 6.70622 6.90480 7.15351 7.59448 8.15594 8.72536 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027919 B = 0.001927 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.661847 B =14527.726518 C =14967.350527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.524 5.524 3 C 0.057 3.943 4 C 0.441 3.559 5 O -0.615 6.615 6 N -0.575 5.575 7 C -0.331 4.331 8 H 0.078 0.922 9 C -0.014 4.014 10 N -0.921 5.921 11 Si 0.992 3.008 12 H -0.272 1.272 13 H -0.271 1.271 14 H -0.273 1.273 15 C 0.087 3.913 16 C -0.120 4.120 17 C 0.112 3.888 18 N -0.586 5.586 19 C 0.584 3.416 20 O -0.560 6.560 21 C 0.264 3.736 22 N -0.501 5.501 23 C 0.136 3.864 24 C -0.183 4.183 25 C 0.131 3.869 26 N -0.518 5.518 27 C 0.120 3.880 28 C -0.163 4.163 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.112 0.888 33 H 0.066 0.934 34 H 0.396 0.604 35 H 0.277 0.723 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.217 0.783 42 H 0.201 0.799 43 H 0.205 0.795 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.656 -27.012 -13.498 30.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.246 5.246 3 C -0.074 4.074 4 C 0.229 3.771 5 O -0.501 6.501 6 N -0.213 5.213 7 C -0.461 4.461 8 H 0.096 0.904 9 C -0.214 4.214 10 N -0.562 5.562 11 Si 0.816 3.184 12 H -0.197 1.197 13 H -0.196 1.196 14 H -0.198 1.198 15 C -0.021 4.021 16 C -0.159 4.159 17 C -0.010 4.010 18 N -0.318 5.318 19 C 0.369 3.631 20 O -0.437 6.437 21 C -0.006 4.006 22 N -0.218 5.218 23 C -0.029 4.029 24 C -0.204 4.204 25 C -0.034 4.034 26 N -0.234 5.234 27 C -0.002 4.002 28 C -0.203 4.203 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.229 0.771 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.234 0.766 42 H 0.218 0.782 43 H 0.222 0.778 44 H 0.116 0.884 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.689 -26.169 -13.209 29.321 hybrid contribution -0.701 0.672 -0.220 0.996 sum -1.390 -25.497 -13.429 28.851 Atomic orbital electron populations 1.22409 0.87651 1.02108 0.99992 1.61807 1.08340 1.12166 1.42298 1.21748 1.02197 0.89718 0.93753 1.20811 0.83655 0.82200 0.90468 1.90461 1.45103 1.65396 1.49112 1.41935 1.50127 1.11601 1.17620 1.19600 1.34359 0.96376 0.95746 0.90363 1.26026 0.96354 0.96679 1.02348 1.69667 1.38098 1.12646 1.35741 0.85004 0.78543 0.77290 0.77591 1.19679 1.19570 1.19839 1.21884 1.00577 0.93239 0.86447 1.21967 1.00631 0.94106 0.99194 1.22168 1.01928 0.96835 0.80087 1.48050 1.56159 1.11330 1.16275 1.17721 0.77312 0.84207 0.83869 1.90761 1.56506 1.69546 1.26866 1.22375 0.88334 0.95101 0.94786 1.68454 1.34627 1.06036 1.12702 1.24186 0.96187 0.90609 0.91920 1.23679 0.94923 1.04480 0.97322 1.24040 1.01593 0.86584 0.91143 1.68191 1.16881 1.20864 1.17475 1.21763 1.01595 0.78091 0.98752 1.22670 1.01201 1.00774 0.95642 0.90776 0.92738 0.95549 0.86951 0.91606 0.77054 0.91374 0.88050 0.92733 0.88913 0.87862 0.88468 0.76629 0.78204 0.77821 0.88358 0.90112 0.92456 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 8.46 127.69 1.08 1.94 16 2 N -0.52 -16.34 4.49 -901.46 -4.05 -20.38 16 3 C 0.06 1.93 4.89 85.56 0.42 2.35 16 4 C 0.44 20.91 7.48 87.66 0.66 21.57 16 5 O -0.61 -33.77 13.91 -3.07 -0.04 -33.81 16 6 N -0.58 -29.54 5.29 -306.98 -1.62 -31.16 16 7 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 10 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 11 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 14 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 15 C 0.09 1.95 2.19 44.95 0.10 2.05 16 16 C -0.12 -2.39 5.11 30.67 0.16 -2.23 16 17 C 0.11 1.93 6.03 86.36 0.52 2.45 16 18 N -0.59 -12.91 2.97 -820.71 -2.43 -15.34 16 19 C 0.58 16.01 7.57 86.99 0.66 16.67 16 20 O -0.56 -19.40 16.52 -3.63 -0.06 -19.46 16 21 C 0.26 6.05 6.69 137.68 0.92 6.97 16 22 N -0.50 -8.24 7.62 -189.09 -1.44 -9.68 16 23 C 0.14 1.01 11.30 84.79 0.96 1.97 16 24 C -0.18 -0.83 10.18 22.54 0.23 -0.60 16 25 C 0.13 1.43 11.30 84.79 0.96 2.39 16 26 N -0.52 -11.41 10.34 -189.09 -1.96 -13.36 16 27 C 0.12 2.47 6.45 86.51 0.56 3.03 16 28 C -0.16 -3.53 4.67 30.82 0.14 -3.39 16 29 H 0.07 2.16 6.36 -2.39 -0.02 2.14 16 30 H 0.05 2.24 5.82 -2.39 -0.01 2.23 16 31 H 0.03 0.80 6.31 -2.39 -0.02 0.78 16 32 H 0.11 3.29 8.00 -2.39 -0.02 3.27 16 33 H 0.07 2.04 6.90 -2.39 -0.02 2.02 16 34 H 0.40 19.29 7.90 -92.70 -0.73 18.56 16 35 H 0.28 14.10 8.31 -92.70 -0.77 13.33 16 36 H 0.10 2.01 8.03 -2.39 -0.02 1.99 16 37 H 0.05 1.23 6.50 -2.38 -0.02 1.21 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.10 1.74 4.76 -2.39 -0.01 1.72 16 40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.22 -0.25 8.06 -2.91 -0.02 -0.27 16 42 H 0.20 -0.94 8.06 -2.91 -0.02 -0.97 16 43 H 0.21 0.76 8.06 -2.91 -0.02 0.74 16 44 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.08 1.92 7.03 -2.38 -0.02 1.90 16 46 H 0.06 1.43 6.47 -2.39 -0.02 1.42 16 47 H 0.09 1.81 6.69 -2.39 -0.02 1.79 16 Total: -1.00 -81.58 377.37 -0.36 -81.94 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.29 Total: 28.82 kcal Atomic # 6 Polarization: 28.18 SS G_CDS: 8.64 Total: 36.82 kcal Atomic # 7 Polarization: -128.31 SS G_CDS: -11.22 Total: -139.52 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -0.10 Total: -53.28 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -81.58 -0.36 -81.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331059045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.218 kcal (2) G-P(sol) polarization free energy of solvation -81.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds