Wall clock time and date at job start Wed Apr 1 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34773 * 120.00688 * 2 1 4 4 O 1.21465 * 120.00540 * 174.74360 * 3 2 1 5 5 C 1.48546 * 119.99424 * 354.75169 * 3 2 1 6 6 N 1.32456 * 119.18536 * 4.75041 * 5 3 2 7 7 C 1.32111 * 120.76416 * 179.76168 * 6 5 3 8 8 C 1.38800 * 119.16510 * 0.50605 * 7 6 5 9 9 C 1.38797 * 118.50567 * 359.74732 * 8 7 6 10 10 N 1.32107 * 119.16577 * 0.02562 * 9 8 7 11 11 C 1.46507 * 119.99627 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.47060 * 175.05162 * 11 2 1 13 13 C 1.53005 * 109.46903 * 55.05790 * 11 2 1 14 14 N 1.46894 * 109.47349 * 55.00138 * 13 11 2 15 15 C 1.46897 * 111.00137 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47500 * 179.97438 * 15 14 13 17 17 O 1.21300 * 119.99723 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00404 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00177 * 180.02562 * 18 16 15 20 20 H 1.08006 * 120.00260 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00110 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99869 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00135 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47195 * 90.00142 * 23 21 19 25 25 H 1.48502 * 109.47414 * 209.99797 * 23 21 19 26 26 H 1.48498 * 109.47476 * 330.00213 * 23 21 19 27 27 C 1.52990 * 109.47325 * 295.05536 * 11 2 1 28 28 C 1.53002 * 117.50262 * 253.58712 * 27 11 2 29 29 C 1.52998 * 117.50205 * 184.92308 * 27 11 2 30 30 H 1.09004 * 109.47752 * 184.90313 * 1 2 3 31 31 H 1.09004 * 109.47004 * 304.90880 * 1 2 3 32 32 H 1.09004 * 109.47627 * 64.90303 * 1 2 3 33 33 H 1.07999 * 120.42051 * 180.25971 * 7 6 5 34 34 H 1.08000 * 120.74994 * 179.77597 * 8 7 6 35 35 H 1.08004 * 120.42104 * 180.02562 * 9 8 7 36 36 H 1.08992 * 109.47128 * 294.99663 * 13 11 2 37 37 H 1.09006 * 109.46677 * 174.99824 * 13 11 2 38 38 H 1.00900 * 110.99970 * 303.94874 * 14 13 11 39 39 H 1.08992 * 109.47283 * 300.00211 * 15 14 13 40 40 H 1.09004 * 109.46897 * 59.99815 * 15 14 13 41 41 H 0.97002 * 119.99726 * 0.02562 * 18 16 15 42 42 H 0.96995 * 119.99711 * 180.02562 * 22 21 19 43 43 H 1.09004 * 115.54978 * 39.25207 * 27 11 2 44 44 H 1.09005 * 117.49398 * 0.02562 * 28 27 11 45 45 H 1.09001 * 117.49882 * 145.01502 * 28 27 11 46 46 H 1.08998 * 117.50365 * 214.97517 * 29 27 11 47 47 H 1.08999 * 117.49757 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3498 1.1693 0.0964 5 6 1.4009 2.4509 -0.1177 6 7 0.0764 2.4360 -0.1262 7 6 -0.6113 3.5597 -0.2248 8 6 0.0714 4.7635 -0.3307 9 6 1.4592 4.7409 -0.3236 10 7 2.0836 3.5816 -0.2174 11 6 2.1974 -1.2688 -0.0006 12 1 3.2658 -1.0716 -0.0891 13 6 1.7368 -2.1230 -1.1835 14 7 1.8890 -1.3583 -2.4284 15 6 1.4560 -2.1490 -3.5882 16 6 1.6258 -1.3333 -4.8440 17 8 2.0649 -0.2045 -4.7792 18 7 1.2908 -1.8585 -6.0392 19 6 1.4458 -1.1166 -7.1816 20 1 1.8360 -0.1112 -7.1238 21 6 1.0999 -1.6578 -8.4137 22 7 0.6247 -2.8810 -8.4840 23 14 1.3104 -0.6468 -9.9702 24 1 2.6669 -0.8758 -10.5296 25 1 0.2885 -1.0547 -10.9675 26 1 1.1434 0.7939 -9.6511 27 6 1.9233 -2.0165 1.3058 28 6 3.0457 -2.0585 2.3447 29 6 2.6908 -3.3174 1.5496 30 1 -0.3635 -1.0239 0.0878 31 1 -0.3633 0.5881 0.8428 32 1 -0.3634 0.4359 -0.9306 33 1 -1.6911 3.5415 -0.2269 34 1 -0.4651 5.6969 -0.4162 35 1 2.0215 5.6595 -0.4038 36 1 0.6897 -2.3946 -1.0496 37 1 2.3429 -3.0275 -1.2362 38 1 1.3880 -0.4839 -2.3792 39 1 2.0603 -3.0534 -3.6575 40 1 0.4070 -2.4211 -3.4712 41 1 0.9400 -2.7614 -6.0910 42 1 0.3836 -3.2589 -9.3441 43 1 0.8989 -1.9600 1.6738 44 1 3.9793 -1.5529 2.0976 45 1 2.7597 -2.0299 3.3961 46 1 2.1714 -4.1167 2.0784 47 1 3.3906 -3.6409 0.7791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331339691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:20 Heat of formation + Delta-G solvation = 37.382533 kcal Electronic energy + Delta-G solvation = -30568.587410 eV Core-core repulsion = 26367.821315 eV Total energy + Delta-G solvation = -4200.766095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.49809 -39.89222 -38.24098 -37.72145 -35.78672 -34.78137 -33.91023 -33.65529 -32.46317 -31.19809 -29.68113 -27.09136 -26.56624 -25.24097 -24.77964 -24.08381 -22.80876 -22.04562 -21.25730 -19.69588 -19.12682 -18.18091 -17.86454 -17.60405 -16.74236 -16.37578 -16.24833 -15.88920 -15.39896 -15.24052 -14.99669 -14.74866 -14.45719 -14.13017 -13.96200 -13.90121 -13.68758 -13.48751 -13.27636 -12.88984 -12.59699 -12.45679 -12.13036 -11.86512 -11.64892 -11.54517 -11.47920 -11.26363 -11.17455 -11.10544 -10.98431 -10.62671 -10.37978 -10.22056 -10.17632 -10.00118 -9.95018 -9.48493 -9.45069 -8.73381 -8.38947 -8.00418 -7.92546 -6.39493 -3.79980 0.23883 0.78882 2.51336 2.59867 3.19380 3.27561 3.33568 3.53828 3.67136 3.70913 3.94189 3.97374 4.09208 4.25220 4.27583 4.58485 4.69462 4.72559 4.75871 4.82006 4.88085 5.09376 5.13046 5.15471 5.22278 5.27941 5.37908 5.40949 5.50076 5.59253 5.68372 5.73070 5.78660 5.83449 5.85757 5.99338 6.00188 6.01517 6.12326 6.29709 6.49257 6.60581 7.17537 7.24956 7.57471 7.63949 7.69279 8.08759 8.09228 8.64517 9.20687 9.57181 10.09412 10.78403 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008857 B = 0.003053 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.407199 B = 9168.547983 C =11529.320085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.588 5.588 3 C 0.589 3.411 4 O -0.498 6.498 5 C 0.289 3.711 6 N -0.488 5.488 7 C 0.140 3.860 8 C -0.211 4.211 9 C 0.146 3.854 10 N -0.466 5.466 11 C 0.175 3.825 12 H 0.111 0.889 13 C 0.054 3.946 14 N -0.666 5.666 15 C 0.052 3.948 16 C 0.441 3.559 17 O -0.581 6.581 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.165 4.165 28 C -0.174 4.174 29 C -0.170 4.170 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.175 0.825 34 H 0.153 0.847 35 H 0.176 0.824 36 H 0.032 0.968 37 H 0.086 0.914 38 H 0.348 0.652 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.018 5.793 22.579 24.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.321 5.321 3 C 0.372 3.628 4 O -0.368 6.368 5 C 0.020 3.980 6 N -0.205 5.205 7 C -0.026 4.026 8 C -0.233 4.233 9 C -0.020 4.020 10 N -0.181 5.181 11 C 0.072 3.928 12 H 0.129 0.871 13 C -0.076 4.076 14 N -0.299 5.299 15 C -0.081 4.081 16 C 0.226 3.774 17 O -0.465 6.465 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.185 4.185 28 C -0.211 4.211 29 C -0.207 4.207 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.192 0.808 34 H 0.171 0.829 35 H 0.193 0.807 36 H 0.050 0.950 37 H 0.104 0.896 38 H 0.168 0.832 39 H 0.105 0.895 40 H 0.060 0.940 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.110 0.890 46 H 0.114 0.886 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.931 5.410 22.481 23.455 hybrid contribution -1.878 0.817 -0.968 2.265 sum -5.809 6.227 21.514 23.138 Atomic orbital electron populations 1.21980 0.78280 1.01316 1.03401 1.47529 1.07683 1.04774 1.72154 1.17183 0.86153 0.81708 0.77789 1.90796 1.12746 1.85875 1.47421 1.22868 0.86910 0.93772 0.94493 1.68896 1.08306 1.30772 1.12512 1.23399 1.01363 0.87471 0.90349 1.23178 0.97018 1.01365 1.01713 1.23406 0.92129 0.96241 0.90263 1.68252 1.41342 0.98325 1.10160 1.20771 0.98738 0.81419 0.91871 0.87076 1.22273 0.99444 0.96806 0.89126 1.59996 1.62909 1.06681 1.00308 1.21669 0.98563 0.97114 0.90755 1.19836 0.84669 0.88388 0.84501 1.90542 1.49698 1.19840 1.86429 1.41850 1.56841 1.16384 1.05051 1.19700 1.40180 0.99380 0.83503 0.88016 1.25247 0.97053 0.96271 0.99373 1.69614 1.43889 1.14368 1.26548 0.85865 0.77973 0.79807 0.80690 1.20368 1.20946 1.19481 1.22557 0.97702 1.00945 0.97252 1.23019 0.99734 1.01546 0.96752 1.22949 1.03360 0.91046 1.03380 0.91690 0.90776 0.91334 0.80776 0.82945 0.80732 0.94950 0.89609 0.83217 0.89491 0.93983 0.77480 0.91919 0.87532 0.88337 0.88987 0.88621 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 7.71 59.84 0.46 1.43 16 2 N -0.59 -7.74 1.90 -174.78 -0.33 -8.07 16 3 C 0.59 9.52 7.70 -12.01 -0.09 9.43 16 4 O -0.50 -9.67 16.22 5.40 0.09 -9.58 16 5 C 0.29 4.22 7.54 -157.07 -1.18 3.03 16 6 N -0.49 -5.57 5.98 -11.12 -0.07 -5.64 16 7 C 0.14 1.13 11.30 -17.22 -0.19 0.93 16 8 C -0.21 -1.49 10.18 -39.17 -0.40 -1.89 16 9 C 0.15 1.41 11.30 -17.23 -0.19 1.21 16 10 N -0.47 -6.75 10.13 -11.12 -0.11 -6.86 16 11 C 0.18 2.20 2.45 -67.93 -0.17 2.04 16 12 H 0.11 1.70 6.74 -51.93 -0.35 1.35 16 13 C 0.05 0.69 4.76 -3.82 -0.02 0.68 16 14 N -0.67 -11.70 6.12 -115.06 -0.70 -12.41 16 15 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 16 C 0.44 10.85 7.82 -10.99 -0.09 10.76 16 17 O -0.58 -16.65 15.78 5.54 0.09 -16.57 16 18 N -0.56 -14.68 5.29 -10.96 -0.06 -14.73 16 19 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 20 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 23 Si 0.93 21.44 29.55 -169.99 -5.02 16.41 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C -0.16 -1.60 5.09 -90.63 -0.46 -2.06 16 28 C -0.17 -1.63 10.18 -26.69 -0.27 -1.90 16 29 C -0.17 -1.43 9.89 -26.69 -0.26 -1.69 16 30 H 0.06 0.56 6.38 -51.93 -0.33 0.23 16 31 H 0.07 0.70 6.92 -51.93 -0.36 0.34 16 32 H 0.07 0.80 7.19 -51.93 -0.37 0.42 16 33 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.15 0.51 8.06 -52.49 -0.42 0.08 16 35 H 0.18 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.03 0.37 7.07 -51.93 -0.37 0.00 16 37 H 0.09 1.03 7.81 -51.93 -0.41 0.62 16 38 H 0.35 6.60 7.33 -39.29 -0.29 6.31 16 39 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.11 0.93 7.40 -51.93 -0.38 0.54 16 44 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.10 0.86 7.98 -51.93 -0.41 0.44 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -36.97 395.62 -9.06 -46.03 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -6.49 Total: 14.86 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: -3.14 Total: 14.73 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -0.55 Total: -71.84 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: 0.17 Total: -26.15 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.97 -9.06 -46.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331339691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.412 kcal (2) G-P(sol) polarization free energy of solvation -36.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds