Wall clock time and date at job start Wed Apr 1 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34773 * 120.00688 * 2 1 4 4 O 1.21465 * 120.00540 * 174.74360 * 3 2 1 5 5 C 1.48546 * 119.99424 * 354.75169 * 3 2 1 6 6 N 1.32456 * 119.18536 * 4.75041 * 5 3 2 7 7 C 1.32111 * 120.76416 * 179.76168 * 6 5 3 8 8 C 1.38800 * 119.16510 * 0.50605 * 7 6 5 9 9 C 1.38797 * 118.50567 * 359.74732 * 8 7 6 10 10 N 1.32107 * 119.16577 * 0.02562 * 9 8 7 11 11 C 1.46507 * 119.99627 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.47060 * 175.05162 * 11 2 1 13 13 C 1.53005 * 109.46903 * 55.05790 * 11 2 1 14 14 N 1.46894 * 109.47349 * 55.00138 * 13 11 2 15 15 C 1.46897 * 111.00137 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47500 * 179.97438 * 15 14 13 17 17 O 1.21300 * 119.99723 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00404 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00177 * 180.02562 * 18 16 15 20 20 H 1.08006 * 120.00260 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00110 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99869 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00135 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47195 * 90.00142 * 23 21 19 25 25 H 1.48502 * 109.47414 * 209.99797 * 23 21 19 26 26 H 1.48498 * 109.47476 * 330.00213 * 23 21 19 27 27 C 1.52990 * 109.47325 * 295.05536 * 11 2 1 28 28 C 1.53002 * 117.50262 * 253.58712 * 27 11 2 29 29 C 1.52998 * 117.50205 * 184.92308 * 27 11 2 30 30 H 1.09004 * 109.47752 * 184.90313 * 1 2 3 31 31 H 1.09004 * 109.47004 * 304.90880 * 1 2 3 32 32 H 1.09004 * 109.47627 * 64.90303 * 1 2 3 33 33 H 1.07999 * 120.42051 * 180.25971 * 7 6 5 34 34 H 1.08000 * 120.74994 * 179.77597 * 8 7 6 35 35 H 1.08004 * 120.42104 * 180.02562 * 9 8 7 36 36 H 1.08992 * 109.47128 * 294.99663 * 13 11 2 37 37 H 1.09006 * 109.46677 * 174.99824 * 13 11 2 38 38 H 1.00900 * 110.99970 * 303.94874 * 14 13 11 39 39 H 1.08992 * 109.47283 * 300.00211 * 15 14 13 40 40 H 1.09004 * 109.46897 * 59.99815 * 15 14 13 41 41 H 0.97002 * 119.99726 * 0.02562 * 18 16 15 42 42 H 0.96995 * 119.99711 * 180.02562 * 22 21 19 43 43 H 1.09004 * 115.54978 * 39.25207 * 27 11 2 44 44 H 1.09005 * 117.49398 * 0.02562 * 28 27 11 45 45 H 1.09001 * 117.49882 * 145.01502 * 28 27 11 46 46 H 1.08998 * 117.50365 * 214.97517 * 29 27 11 47 47 H 1.08999 * 117.49757 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3498 1.1693 0.0964 5 6 1.4009 2.4509 -0.1177 6 7 0.0764 2.4360 -0.1262 7 6 -0.6113 3.5597 -0.2248 8 6 0.0714 4.7635 -0.3307 9 6 1.4592 4.7409 -0.3236 10 7 2.0836 3.5816 -0.2174 11 6 2.1974 -1.2688 -0.0006 12 1 3.2658 -1.0716 -0.0891 13 6 1.7368 -2.1230 -1.1835 14 7 1.8890 -1.3583 -2.4284 15 6 1.4560 -2.1490 -3.5882 16 6 1.6258 -1.3333 -4.8440 17 8 2.0649 -0.2045 -4.7792 18 7 1.2908 -1.8585 -6.0392 19 6 1.4458 -1.1166 -7.1816 20 1 1.8360 -0.1112 -7.1238 21 6 1.0999 -1.6578 -8.4137 22 7 0.6247 -2.8810 -8.4840 23 14 1.3104 -0.6468 -9.9702 24 1 2.6669 -0.8758 -10.5296 25 1 0.2885 -1.0547 -10.9675 26 1 1.1434 0.7939 -9.6511 27 6 1.9233 -2.0165 1.3058 28 6 3.0457 -2.0585 2.3447 29 6 2.6908 -3.3174 1.5496 30 1 -0.3635 -1.0239 0.0878 31 1 -0.3633 0.5881 0.8428 32 1 -0.3634 0.4359 -0.9306 33 1 -1.6911 3.5415 -0.2269 34 1 -0.4651 5.6969 -0.4162 35 1 2.0215 5.6595 -0.4038 36 1 0.6897 -2.3946 -1.0496 37 1 2.3429 -3.0275 -1.2362 38 1 1.3880 -0.4839 -2.3792 39 1 2.0603 -3.0534 -3.6575 40 1 0.4070 -2.4211 -3.4712 41 1 0.9400 -2.7614 -6.0910 42 1 0.3836 -3.2589 -9.3441 43 1 0.8989 -1.9600 1.6738 44 1 3.9793 -1.5529 2.0976 45 1 2.7597 -2.0299 3.3961 46 1 2.1714 -4.1167 2.0784 47 1 3.3906 -3.6409 0.7791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331339691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:17 Heat of formation + Delta-G solvation = 9.910133 kcal Electronic energy + Delta-G solvation = -30569.778703 eV Core-core repulsion = 26367.821315 eV Total energy + Delta-G solvation = -4201.957388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.35189 -40.90059 -40.12461 -38.77238 -36.86136 -36.16328 -35.66715 -34.66995 -33.33407 -33.21109 -30.83727 -28.26063 -27.87584 -26.47483 -25.64092 -25.46633 -23.76239 -22.93289 -22.14001 -21.20250 -20.48761 -19.92311 -19.09413 -18.50702 -17.90171 -17.68360 -17.21477 -17.00210 -16.74968 -16.48959 -16.19778 -15.94506 -15.66964 -15.54390 -15.37940 -14.93676 -14.85208 -14.54755 -14.47225 -14.20425 -13.90073 -13.55491 -13.40752 -13.23244 -13.07213 -12.98388 -12.76418 -12.45377 -12.40283 -12.20046 -12.13900 -12.05160 -11.97045 -11.54414 -11.38006 -11.07281 -10.93730 -10.72299 -10.40598 -10.26251 -10.04389 -9.73233 -9.32904 -8.49220 -5.98133 -0.58739 0.08956 1.35547 1.39351 1.50740 1.52067 1.62709 2.01826 2.26844 2.67692 2.80213 2.85543 3.00508 3.17703 3.21659 3.43115 3.66371 3.76784 3.86949 3.92536 4.07390 4.10392 4.12689 4.24144 4.28654 4.33057 4.38333 4.43911 4.50657 4.56376 4.70648 4.74828 4.77888 4.83568 4.87551 5.03640 5.06590 5.25606 5.30409 5.31486 5.37927 5.53915 5.85252 5.88851 6.07610 6.13838 6.29404 6.57885 6.77588 7.03619 7.10063 7.52846 8.09428 8.68156 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008857 B = 0.003053 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.407199 B = 9168.547983 C =11529.320085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.580 5.580 3 C 0.575 3.425 4 O -0.553 6.553 5 C 0.255 3.745 6 N -0.489 5.489 7 C 0.130 3.870 8 C -0.182 4.182 9 C 0.125 3.875 10 N -0.514 5.514 11 C 0.176 3.824 12 H 0.074 0.926 13 C 0.059 3.941 14 N -0.689 5.689 15 C 0.067 3.933 16 C 0.434 3.566 17 O -0.629 6.629 18 N -0.569 5.569 19 C -0.336 4.336 20 H 0.074 0.926 21 C -0.010 4.010 22 N -0.917 5.917 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.266 1.266 26 H -0.275 1.275 27 C -0.164 4.164 28 C -0.184 4.184 29 C -0.152 4.152 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.218 0.782 34 H 0.201 0.799 35 H 0.203 0.797 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.337 0.663 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.398 0.602 42 H 0.279 0.721 43 H 0.126 0.874 44 H 0.075 0.925 45 H 0.107 0.893 46 H 0.120 0.880 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 5.336 23.021 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.312 5.312 3 C 0.359 3.641 4 O -0.429 6.429 5 C -0.014 4.014 6 N -0.207 5.207 7 C -0.035 4.035 8 C -0.203 4.203 9 C -0.040 4.040 10 N -0.230 5.230 11 C 0.072 3.928 12 H 0.092 0.908 13 C -0.070 4.070 14 N -0.322 5.322 15 C -0.065 4.065 16 C 0.222 3.778 17 O -0.516 6.516 18 N -0.207 5.207 19 C -0.466 4.466 20 H 0.092 0.908 21 C -0.210 4.210 22 N -0.558 5.558 23 Si 0.815 3.185 24 H -0.197 1.197 25 H -0.191 1.191 26 H -0.199 1.199 27 C -0.184 4.184 28 C -0.221 4.221 29 C -0.190 4.190 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.235 0.765 34 H 0.218 0.782 35 H 0.220 0.780 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.155 0.845 39 H 0.126 0.874 40 H 0.091 0.909 41 H 0.232 0.768 42 H 0.088 0.912 43 H 0.144 0.856 44 H 0.093 0.907 45 H 0.125 0.875 46 H 0.138 0.862 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.894 4.899 22.937 24.447 hybrid contribution -1.033 1.053 -1.093 1.836 sum -7.927 5.952 21.844 23.988 Atomic orbital electron populations 1.22088 0.76384 1.02909 1.03234 1.47653 1.08789 1.04191 1.70580 1.17722 0.85937 0.83222 0.77175 1.90736 1.14937 1.86862 1.50356 1.22517 0.88097 0.93138 0.97649 1.68862 1.06789 1.32523 1.12519 1.24259 1.03196 0.86924 0.89167 1.23688 0.95868 1.02967 0.97791 1.24045 0.94000 0.95711 0.90253 1.68147 1.43335 0.99778 1.11747 1.20726 0.96799 0.81594 0.93641 0.90804 1.22364 1.01331 0.96484 0.86863 1.59976 1.63432 1.06860 1.01890 1.21542 1.00833 0.96274 0.87835 1.20956 0.82733 0.88243 0.85887 1.90512 1.51440 1.22276 1.87349 1.41889 1.57193 1.16445 1.05129 1.19628 1.42495 0.99109 0.85369 0.90804 1.26014 0.95952 0.97344 1.01678 1.69664 1.43317 1.15081 1.27751 0.84952 0.78471 0.77988 0.77057 1.19743 1.19079 1.19949 1.22476 0.98663 1.01611 0.95631 1.23022 0.98832 1.02568 0.97636 1.23038 1.02469 0.90828 1.02642 0.89274 0.89675 0.92519 0.76516 0.78217 0.78047 0.92150 0.88302 0.84469 0.87410 0.90944 0.76808 0.91169 0.85592 0.90678 0.87463 0.86183 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.89 7.71 127.77 0.98 2.87 16 2 N -0.58 -15.77 1.90 -825.20 -1.56 -17.34 16 3 C 0.57 20.14 7.70 87.00 0.67 20.81 16 4 O -0.55 -23.90 16.22 -3.61 -0.06 -23.96 16 5 C 0.26 7.86 7.54 137.69 1.04 8.90 16 6 N -0.49 -11.01 5.98 -189.09 -1.13 -12.14 16 7 C 0.13 1.78 11.30 84.79 0.96 2.74 16 8 C -0.18 -2.08 10.18 22.54 0.23 -1.85 16 9 C 0.12 2.35 11.30 84.79 0.96 3.31 16 10 N -0.51 -15.79 10.13 -189.09 -1.92 -17.71 16 11 C 0.18 4.49 2.45 44.99 0.11 4.60 16 12 H 0.07 2.47 6.74 -2.38 -0.02 2.45 16 13 C 0.06 1.44 4.76 86.31 0.41 1.85 16 14 N -0.69 -24.29 6.12 -517.95 -3.17 -27.46 16 15 C 0.07 2.41 6.17 85.56 0.53 2.94 16 16 C 0.43 21.80 7.82 87.66 0.69 22.48 16 17 O -0.63 -37.59 15.78 -3.09 -0.05 -37.64 16 18 N -0.57 -30.08 5.29 -306.97 -1.62 -31.70 16 19 C -0.34 -19.69 9.68 84.04 0.81 -18.88 16 20 H 0.07 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 22 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 23 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 27 C -0.16 -2.98 5.09 -10.80 -0.05 -3.04 16 28 C -0.18 -3.41 10.18 30.62 0.31 -3.10 16 29 C -0.15 -2.28 9.89 30.62 0.30 -1.98 16 30 H 0.09 1.30 6.38 -2.38 -0.02 1.28 16 31 H 0.08 1.50 6.92 -2.38 -0.02 1.49 16 32 H 0.06 1.29 7.19 -2.38 -0.02 1.27 16 33 H 0.22 0.95 8.06 -2.91 -0.02 0.92 16 34 H 0.20 0.33 8.06 -2.91 -0.02 0.30 16 35 H 0.20 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.06 1.18 7.07 -2.39 -0.02 1.16 16 37 H 0.10 2.18 7.81 -2.38 -0.02 2.16 16 38 H 0.34 13.12 7.33 -89.69 -0.66 12.46 16 39 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 40 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 42 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 43 H 0.13 1.83 7.40 -2.39 -0.02 1.81 16 44 H 0.07 1.75 8.08 -2.38 -0.02 1.73 16 45 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.09 1.52 7.98 -2.39 -0.02 1.50 16 Total: -1.00 -87.54 395.62 0.85 -86.70 By element: Atomic # 1 Polarization: 43.83 SS G_CDS: -0.36 Total: 43.46 kcal Atomic # 6 Polarization: 33.18 SS G_CDS: 8.41 Total: 41.59 kcal Atomic # 7 Polarization: -146.76 SS G_CDS: -9.12 Total: -155.88 kcal Atomic # 8 Polarization: -61.49 SS G_CDS: -0.11 Total: -61.60 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -87.54 0.85 -86.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331339691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.606 kcal (2) G-P(sol) polarization free energy of solvation -87.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds