Wall clock time and date at job start Wed Apr 1 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34770 * 120.00311 * 2 1 4 4 O 1.21473 * 120.00332 * 177.28001 * 3 2 1 5 5 C 1.48535 * 119.99917 * 357.28786 * 3 2 1 6 6 N 1.32459 * 119.18742 * 7.08730 * 5 3 2 7 7 C 1.32112 * 120.77088 * 179.72271 * 6 5 3 8 8 C 1.38801 * 119.16189 * 0.54124 * 7 6 5 9 9 C 1.38806 * 118.50715 * 359.73832 * 8 7 6 10 10 N 1.32105 * 119.16218 * 359.97438 * 9 8 7 11 11 C 1.46510 * 119.99878 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.46961 * 179.97438 * 11 2 1 13 13 C 1.53002 * 109.46735 * 299.99177 * 11 2 1 14 14 N 1.46893 * 109.46997 * 305.00058 * 13 11 2 15 15 C 1.46907 * 110.99750 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47068 * 180.02562 * 15 14 13 17 17 O 1.21285 * 120.00335 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99771 * 180.02562 * 16 15 14 19 19 C 1.37096 * 120.00003 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99841 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00106 * 179.97438 * 19 18 16 22 22 N 1.31415 * 120.00215 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99907 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47412 * 60.00320 * 23 21 19 25 25 H 1.48507 * 109.47106 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47316 * 299.99764 * 23 21 19 27 27 C 1.52997 * 109.47241 * 59.99221 * 11 2 1 28 28 C 1.53004 * 117.49900 * 128.74432 * 27 11 2 29 29 C 1.53006 * 117.49775 * 60.08682 * 27 11 2 30 30 H 1.09003 * 109.46325 * 276.09368 * 1 2 3 31 31 H 1.08996 * 109.47100 * 36.09229 * 1 2 3 32 32 H 1.08993 * 109.47401 * 156.09715 * 1 2 3 33 33 H 1.07998 * 120.41799 * 180.27817 * 7 6 5 34 34 H 1.08000 * 120.74491 * 179.75246 * 8 7 6 35 35 H 1.08005 * 120.41415 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.46997 * 65.00587 * 13 11 2 37 37 H 1.08999 * 109.46712 * 185.00202 * 13 11 2 38 38 H 1.00903 * 111.00347 * 56.05433 * 14 13 11 39 39 H 1.09004 * 109.47212 * 300.00034 * 15 14 13 40 40 H 1.08998 * 109.47142 * 59.99733 * 15 14 13 41 41 H 0.96998 * 119.99839 * 359.97438 * 18 16 15 42 42 H 0.96995 * 120.00127 * 179.97438 * 22 21 19 43 43 H 1.08996 * 115.55482 * 274.42115 * 27 11 2 44 44 H 1.09003 * 117.49707 * 0.02562 * 28 27 11 45 45 H 1.09001 * 117.49793 * 145.01457 * 28 27 11 46 46 H 1.08996 * 117.49703 * 214.97530 * 29 27 11 47 47 H 1.08996 * 117.49779 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3526 1.1677 0.0499 5 6 1.3975 2.4528 -0.0609 6 7 0.0760 2.4412 0.0280 7 6 -0.6144 3.5667 -0.0170 8 6 0.0617 4.7691 -0.1707 9 6 1.4462 4.7432 -0.2663 10 7 2.0739 3.5822 -0.2079 11 6 2.1975 -1.2688 -0.0006 12 1 3.2692 -1.0696 -0.0009 13 6 1.8279 -2.0715 1.2485 14 7 2.0715 -1.2550 2.4450 15 6 1.7276 -1.9953 3.6664 16 6 1.9895 -1.1275 4.8703 17 8 2.4206 -0.0032 4.7253 18 7 1.7455 -1.6012 6.1084 19 6 1.9842 -0.8119 7.2036 20 1 2.3681 0.1893 7.0744 21 6 1.7322 -1.3000 8.4799 22 7 1.2656 -2.5184 8.6372 23 14 2.0568 -0.2243 9.9722 24 1 1.2261 1.0037 9.8874 25 1 1.7098 -0.9729 11.2069 26 1 3.4931 0.1511 10.0088 27 6 1.8277 -2.0707 -1.2500 28 6 2.9739 -2.6052 -2.1112 29 6 2.1225 -1.4350 -2.6102 30 1 -0.3632 0.1091 1.0219 31 1 -0.3633 0.8304 -0.6054 32 1 -0.3634 -0.9394 -0.4164 33 1 -1.6915 3.5510 0.0605 34 1 -0.4774 5.7040 -0.2147 35 1 2.0034 5.6606 -0.3860 36 1 0.7742 -2.3469 1.2048 37 1 2.4377 -2.9738 1.2940 38 1 1.5668 -0.3827 2.3965 39 1 0.6733 -2.2705 3.6398 40 1 2.3370 -2.8970 3.7285 41 1 1.4011 -2.5005 6.2244 42 1 1.0900 -2.8593 9.5281 43 1 0.9322 -2.6862 -1.1657 44 1 3.9913 -2.3859 -1.7874 45 1 2.8322 -3.5723 -2.5936 46 1 1.4211 -1.6328 -3.4207 47 1 2.5802 -0.4458 -2.6149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331339692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:24 Heat of formation + Delta-G solvation = 41.052424 kcal Electronic energy + Delta-G solvation = -30613.634146 eV Core-core repulsion = 26413.027189 eV Total energy + Delta-G solvation = -4200.606957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.55427 -39.90337 -38.20161 -37.65111 -35.74114 -34.81783 -33.90716 -33.64129 -32.48188 -31.17819 -29.79408 -27.01454 -26.53219 -25.28129 -24.82265 -24.05562 -22.61883 -22.12981 -21.34957 -19.70587 -19.13582 -18.14403 -17.85098 -17.59876 -16.77928 -16.35451 -16.17574 -15.85248 -15.43214 -15.30425 -15.02982 -14.81277 -14.43712 -14.16863 -14.04950 -13.96482 -13.65359 -13.37659 -13.25616 -12.87908 -12.62859 -12.44129 -11.96766 -11.76327 -11.72388 -11.55523 -11.46499 -11.27497 -11.19639 -10.99568 -10.94001 -10.55808 -10.42863 -10.40357 -10.16984 -10.03725 -9.86815 -9.45529 -9.38688 -8.70142 -8.35755 -7.96902 -7.90015 -6.37355 -3.77836 0.21129 0.74282 2.52491 2.58319 3.23164 3.28027 3.33097 3.51630 3.66033 3.72432 3.96570 3.98193 4.06694 4.21867 4.26281 4.55759 4.68660 4.71075 4.72727 4.80968 4.84686 5.04707 5.13719 5.25930 5.27852 5.30900 5.34807 5.40855 5.47323 5.62501 5.70123 5.72643 5.79164 5.82792 5.88933 5.96204 6.03380 6.09793 6.12296 6.32221 6.51294 6.58188 7.20180 7.28779 7.59285 7.61530 7.73348 8.10976 8.11375 8.66969 9.22799 9.59492 10.12016 10.80539 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009654 B = 0.002929 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.523177 B = 9557.265452 C =11649.885972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.585 5.585 3 C 0.584 3.416 4 O -0.494 6.494 5 C 0.291 3.709 6 N -0.485 5.485 7 C 0.139 3.861 8 C -0.212 4.212 9 C 0.147 3.853 10 N -0.467 5.467 11 C 0.173 3.827 12 H 0.112 0.888 13 C 0.055 3.945 14 N -0.664 5.664 15 C 0.052 3.948 16 C 0.441 3.559 17 O -0.580 6.580 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.101 0.899 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.165 4.165 28 C -0.167 4.167 29 C -0.169 4.169 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.176 0.824 34 H 0.153 0.847 35 H 0.176 0.824 36 H 0.030 0.970 37 H 0.085 0.915 38 H 0.348 0.652 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 5.343 -24.046 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.318 5.318 3 C 0.367 3.633 4 O -0.365 6.365 5 C 0.021 3.979 6 N -0.203 5.203 7 C -0.027 4.027 8 C -0.234 4.234 9 C -0.020 4.020 10 N -0.182 5.182 11 C 0.070 3.930 12 H 0.130 0.870 13 C -0.075 4.075 14 N -0.297 5.297 15 C -0.081 4.081 16 C 0.226 3.774 17 O -0.464 6.464 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.119 0.881 21 C -0.179 4.179 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.185 4.185 28 C -0.205 4.205 29 C -0.207 4.207 30 H 0.073 0.927 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.193 0.807 34 H 0.171 0.829 35 H 0.193 0.807 36 H 0.049 0.951 37 H 0.104 0.896 38 H 0.168 0.832 39 H 0.059 0.941 40 H 0.105 0.895 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.126 0.874 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.705 4.964 -23.838 25.008 hybrid contribution -1.823 0.806 0.977 2.220 sum -7.528 5.770 -22.861 24.750 Atomic orbital electron populations 1.22389 0.78385 1.03260 1.02999 1.47568 1.07742 1.04643 1.71885 1.17227 0.86292 0.81710 0.78086 1.90826 1.12509 1.85805 1.47331 1.22965 0.86903 0.93893 0.94106 1.68924 1.08174 1.30133 1.13032 1.23470 1.01452 0.87579 0.90180 1.23173 0.97076 1.01327 1.01783 1.23418 0.92043 0.96213 0.90302 1.68265 1.41066 0.98311 1.10530 1.20791 0.98649 0.81443 0.92092 0.87005 1.22255 0.99080 0.96622 0.89564 1.59984 1.63489 1.06625 0.99623 1.21673 0.98874 0.97358 0.90198 1.19838 0.84818 0.88593 0.84112 1.90541 1.49675 1.20461 1.85705 1.41843 1.57646 1.16328 1.04368 1.19654 1.40650 0.98813 0.83665 0.88069 1.25240 0.97196 0.96464 0.99030 1.69605 1.45127 1.15694 1.24079 0.85929 0.79076 0.79389 0.79886 1.19983 1.20979 1.19874 1.22569 1.00881 1.03344 0.91672 1.23012 0.96243 0.98229 1.03010 1.22836 1.03407 0.98021 0.96404 0.92668 0.87530 0.92105 0.80722 0.82941 0.80720 0.95142 0.89645 0.83190 0.94053 0.89504 0.77492 0.91884 0.87394 0.88312 0.88560 0.88892 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 8.43 59.85 0.50 1.26 16 2 N -0.59 -7.63 1.71 -174.79 -0.30 -7.93 16 3 C 0.58 9.40 7.70 -12.02 -0.09 9.31 16 4 O -0.49 -9.76 16.20 5.39 0.09 -9.67 16 5 C 0.29 4.15 7.49 -157.07 -1.18 2.98 16 6 N -0.49 -5.41 6.03 -11.12 -0.07 -5.48 16 7 C 0.14 1.06 11.30 -17.22 -0.19 0.87 16 8 C -0.21 -1.40 10.18 -39.16 -0.40 -1.80 16 9 C 0.15 1.34 11.30 -17.22 -0.19 1.15 16 10 N -0.47 -6.55 10.14 -11.12 -0.11 -6.67 16 11 C 0.17 2.17 2.52 -67.93 -0.17 2.00 16 12 H 0.11 1.71 6.66 -51.93 -0.35 1.36 16 13 C 0.06 0.73 5.01 -3.83 -0.02 0.71 16 14 N -0.66 -11.96 6.12 -115.05 -0.70 -12.66 16 15 C 0.05 0.97 6.17 -4.97 -0.03 0.94 16 16 C 0.44 11.03 7.82 -10.98 -0.09 10.94 16 17 O -0.58 -16.87 15.78 5.55 0.09 -16.78 16 18 N -0.56 -14.87 5.29 -10.96 -0.06 -14.93 16 19 C -0.30 -8.61 9.68 -14.94 -0.14 -8.75 16 20 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -25.09 13.05 55.50 0.72 -24.37 16 23 Si 0.93 21.63 29.55 -169.99 -5.02 16.61 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 C -0.17 -1.55 4.38 -90.62 -0.40 -1.95 16 28 C -0.17 -1.46 10.18 -26.69 -0.27 -1.73 16 29 C -0.17 -1.54 10.13 -26.69 -0.27 -1.82 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.11 1.04 5.19 -53.22 -0.28 0.77 16 32 H 0.06 0.51 7.18 -51.93 -0.37 0.14 16 33 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 35 H 0.18 0.99 8.06 -52.48 -0.42 0.56 16 36 H 0.03 0.35 7.84 -51.93 -0.41 -0.05 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.35 6.79 7.56 -39.29 -0.30 6.49 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 41 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 42 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.11 0.88 7.96 -51.93 -0.41 0.46 16 44 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 397.96 15.07 6.00 6.00 Total: -1.00 -37.35 397.96 -9.00 -46.35 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -6.59 Total: 14.92 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: -3.04 Total: 14.62 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -0.52 Total: -72.03 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: 0.17 Total: -26.46 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.35 -9.00 -46.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331339692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.398 kcal (2) G-P(sol) polarization free energy of solvation -37.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds