Wall clock time and date at job start Wed Apr 1 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34770 * 120.00311 * 2 1 4 4 O 1.21473 * 120.00332 * 177.28001 * 3 2 1 5 5 C 1.48535 * 119.99917 * 357.28786 * 3 2 1 6 6 N 1.32459 * 119.18742 * 7.08730 * 5 3 2 7 7 C 1.32112 * 120.77088 * 179.72271 * 6 5 3 8 8 C 1.38801 * 119.16189 * 0.54124 * 7 6 5 9 9 C 1.38806 * 118.50715 * 359.73832 * 8 7 6 10 10 N 1.32105 * 119.16218 * 359.97438 * 9 8 7 11 11 C 1.46510 * 119.99878 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.46961 * 179.97438 * 11 2 1 13 13 C 1.53002 * 109.46735 * 299.99177 * 11 2 1 14 14 N 1.46893 * 109.46997 * 305.00058 * 13 11 2 15 15 C 1.46907 * 110.99750 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47068 * 180.02562 * 15 14 13 17 17 O 1.21285 * 120.00335 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99771 * 180.02562 * 16 15 14 19 19 C 1.37096 * 120.00003 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99841 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00106 * 179.97438 * 19 18 16 22 22 N 1.31415 * 120.00215 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99907 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47412 * 60.00320 * 23 21 19 25 25 H 1.48507 * 109.47106 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47316 * 299.99764 * 23 21 19 27 27 C 1.52997 * 109.47241 * 59.99221 * 11 2 1 28 28 C 1.53004 * 117.49900 * 128.74432 * 27 11 2 29 29 C 1.53006 * 117.49775 * 60.08682 * 27 11 2 30 30 H 1.09003 * 109.46325 * 276.09368 * 1 2 3 31 31 H 1.08996 * 109.47100 * 36.09229 * 1 2 3 32 32 H 1.08993 * 109.47401 * 156.09715 * 1 2 3 33 33 H 1.07998 * 120.41799 * 180.27817 * 7 6 5 34 34 H 1.08000 * 120.74491 * 179.75246 * 8 7 6 35 35 H 1.08005 * 120.41415 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.46997 * 65.00587 * 13 11 2 37 37 H 1.08999 * 109.46712 * 185.00202 * 13 11 2 38 38 H 1.00903 * 111.00347 * 56.05433 * 14 13 11 39 39 H 1.09004 * 109.47212 * 300.00034 * 15 14 13 40 40 H 1.08998 * 109.47142 * 59.99733 * 15 14 13 41 41 H 0.96998 * 119.99839 * 359.97438 * 18 16 15 42 42 H 0.96995 * 120.00127 * 179.97438 * 22 21 19 43 43 H 1.08996 * 115.55482 * 274.42115 * 27 11 2 44 44 H 1.09003 * 117.49707 * 0.02562 * 28 27 11 45 45 H 1.09001 * 117.49793 * 145.01457 * 28 27 11 46 46 H 1.08996 * 117.49703 * 214.97530 * 29 27 11 47 47 H 1.08996 * 117.49779 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3526 1.1677 0.0499 5 6 1.3975 2.4528 -0.0609 6 7 0.0760 2.4412 0.0280 7 6 -0.6144 3.5667 -0.0170 8 6 0.0617 4.7691 -0.1707 9 6 1.4462 4.7432 -0.2663 10 7 2.0739 3.5822 -0.2079 11 6 2.1975 -1.2688 -0.0006 12 1 3.2692 -1.0696 -0.0009 13 6 1.8279 -2.0715 1.2485 14 7 2.0715 -1.2550 2.4450 15 6 1.7276 -1.9953 3.6664 16 6 1.9895 -1.1275 4.8703 17 8 2.4206 -0.0032 4.7253 18 7 1.7455 -1.6012 6.1084 19 6 1.9842 -0.8119 7.2036 20 1 2.3681 0.1893 7.0744 21 6 1.7322 -1.3000 8.4799 22 7 1.2656 -2.5184 8.6372 23 14 2.0568 -0.2243 9.9722 24 1 1.2261 1.0037 9.8874 25 1 1.7098 -0.9729 11.2069 26 1 3.4931 0.1511 10.0088 27 6 1.8277 -2.0707 -1.2500 28 6 2.9739 -2.6052 -2.1112 29 6 2.1225 -1.4350 -2.6102 30 1 -0.3632 0.1091 1.0219 31 1 -0.3633 0.8304 -0.6054 32 1 -0.3634 -0.9394 -0.4164 33 1 -1.6915 3.5510 0.0605 34 1 -0.4774 5.7040 -0.2147 35 1 2.0034 5.6606 -0.3860 36 1 0.7742 -2.3469 1.2048 37 1 2.4377 -2.9738 1.2940 38 1 1.5668 -0.3827 2.3965 39 1 0.6733 -2.2705 3.6398 40 1 2.3370 -2.8970 3.7285 41 1 1.4011 -2.5005 6.2244 42 1 1.0900 -2.8593 9.5281 43 1 0.9322 -2.6862 -1.1657 44 1 3.9913 -2.3859 -1.7874 45 1 2.8322 -3.5723 -2.5936 46 1 1.4211 -1.6328 -3.4207 47 1 2.5802 -0.4458 -2.6149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331339692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:23 Heat of formation + Delta-G solvation = 13.227256 kcal Electronic energy + Delta-G solvation = -30614.840736 eV Core-core repulsion = 26413.027189 eV Total energy + Delta-G solvation = -4201.813547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.38650 -40.90315 -40.12974 -38.69057 -36.86000 -36.13593 -35.69939 -34.65824 -33.34474 -33.20922 -30.96092 -28.20826 -27.86334 -26.44216 -25.68073 -25.49660 -23.49387 -23.10173 -22.21695 -21.20053 -20.51305 -19.93460 -19.03918 -18.47968 -18.01366 -17.62385 -17.13110 -16.93910 -16.78131 -16.48696 -16.23397 -15.95310 -15.83400 -15.56244 -15.36358 -14.99075 -14.82016 -14.60171 -14.50582 -14.19265 -13.88953 -13.54496 -13.31229 -13.26765 -12.99126 -12.93330 -12.74723 -12.46831 -12.43075 -12.21836 -12.13960 -12.10866 -11.87569 -11.54510 -11.33604 -11.19672 -10.88259 -10.71804 -10.41537 -10.18263 -10.04994 -9.70147 -9.31542 -8.49409 -5.98546 -0.59013 0.07468 1.36872 1.38757 1.49965 1.56173 1.59693 2.01521 2.26686 2.67865 2.79669 2.88279 2.99970 3.17235 3.22573 3.40708 3.65926 3.71320 3.84442 3.93391 4.05436 4.09550 4.15056 4.27770 4.29333 4.34222 4.39712 4.43597 4.48989 4.57924 4.71699 4.74944 4.77879 4.82080 4.90185 5.02736 5.11137 5.25507 5.27405 5.34809 5.37228 5.57930 5.85617 5.88904 6.08085 6.16830 6.30143 6.57644 6.78424 7.05579 7.09545 7.52304 8.09145 8.67807 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009654 B = 0.002929 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.523177 B = 9557.265452 C =11649.885972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.576 5.576 3 C 0.571 3.429 4 O -0.554 6.554 5 C 0.257 3.743 6 N -0.489 5.489 7 C 0.129 3.871 8 C -0.181 4.181 9 C 0.126 3.874 10 N -0.514 5.514 11 C 0.172 3.828 12 H 0.074 0.926 13 C 0.059 3.941 14 N -0.688 5.688 15 C 0.067 3.933 16 C 0.434 3.566 17 O -0.629 6.629 18 N -0.569 5.569 19 C -0.338 4.338 20 H 0.074 0.926 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.266 1.266 26 H -0.275 1.275 27 C -0.159 4.159 28 C -0.163 4.163 29 C -0.169 4.169 30 H 0.044 0.956 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.219 0.781 34 H 0.201 0.799 35 H 0.204 0.796 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.336 0.664 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.398 0.602 42 H 0.279 0.721 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.122 0.878 46 H 0.116 0.884 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.847 4.912 -24.644 27.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.307 5.307 3 C 0.356 3.644 4 O -0.430 6.430 5 C -0.012 4.012 6 N -0.207 5.207 7 C -0.036 4.036 8 C -0.203 4.203 9 C -0.039 4.039 10 N -0.230 5.230 11 C 0.069 3.931 12 H 0.092 0.908 13 C -0.070 4.070 14 N -0.320 5.320 15 C -0.065 4.065 16 C 0.221 3.779 17 O -0.515 6.515 18 N -0.207 5.207 19 C -0.468 4.468 20 H 0.092 0.908 21 C -0.210 4.210 22 N -0.558 5.558 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.190 1.190 26 H -0.200 1.200 27 C -0.178 4.178 28 C -0.200 4.200 29 C -0.206 4.206 30 H 0.063 0.937 31 H 0.132 0.868 32 H 0.106 0.894 33 H 0.235 0.765 34 H 0.218 0.782 35 H 0.220 0.780 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.154 0.846 39 H 0.089 0.911 40 H 0.126 0.874 41 H 0.232 0.768 42 H 0.089 0.911 43 H 0.154 0.846 44 H 0.100 0.900 45 H 0.140 0.860 46 H 0.134 0.866 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.789 4.480 -24.452 26.367 hybrid contribution -0.947 1.040 1.135 1.808 sum -9.736 5.520 -23.317 25.864 Atomic orbital electron populations 1.22509 0.76525 1.05086 1.02668 1.47676 1.08793 1.04036 1.70235 1.17777 0.86023 0.83288 0.77326 1.90762 1.14896 1.86855 1.50505 1.22556 0.88075 0.93204 0.97382 1.68861 1.06690 1.32034 1.13071 1.24323 1.03250 0.87016 0.89020 1.23685 0.95918 1.02900 0.97748 1.24067 0.93887 0.95647 0.90264 1.68160 1.43032 0.99745 1.12046 1.20761 0.96816 0.81754 0.93759 0.90768 1.22363 1.00991 0.96204 0.87475 1.59966 1.64176 1.06920 1.00978 1.21545 1.01016 0.96280 0.87637 1.20961 0.82996 0.88607 0.85296 1.90510 1.51508 1.22957 1.86568 1.41883 1.57906 1.16333 1.04534 1.19602 1.43071 0.98623 0.85458 0.90818 1.26020 0.96135 0.97767 1.01049 1.69657 1.44489 1.16464 1.25222 0.85011 0.78718 0.77931 0.76791 1.19633 1.19000 1.19999 1.22506 1.02132 1.03225 0.89964 1.23079 0.95279 0.99125 1.02523 1.22810 1.03918 0.96883 0.96992 0.93734 0.86781 0.89413 0.76457 0.78156 0.77960 0.92292 0.88340 0.84571 0.91058 0.87409 0.76813 0.91138 0.84618 0.89951 0.86014 0.86575 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.47 8.43 127.77 1.08 2.54 16 2 N -0.58 -15.62 1.71 -825.21 -1.41 -17.03 16 3 C 0.57 20.08 7.70 86.99 0.67 20.75 16 4 O -0.55 -24.51 16.20 -3.63 -0.06 -24.57 16 5 C 0.26 7.79 7.49 137.68 1.03 8.82 16 6 N -0.49 -10.77 6.03 -189.09 -1.14 -11.91 16 7 C 0.13 1.67 11.30 84.79 0.96 2.62 16 8 C -0.18 -1.89 10.18 22.54 0.23 -1.66 16 9 C 0.13 2.24 11.30 84.79 0.96 3.20 16 10 N -0.51 -15.35 10.14 -189.09 -1.92 -17.27 16 11 C 0.17 4.41 2.52 44.99 0.11 4.52 16 12 H 0.07 2.49 6.66 -2.38 -0.02 2.47 16 13 C 0.06 1.49 5.01 86.31 0.43 1.92 16 14 N -0.69 -25.06 6.12 -517.92 -3.17 -28.22 16 15 C 0.07 2.49 6.17 85.56 0.53 3.02 16 16 C 0.43 22.23 7.82 87.66 0.69 22.91 16 17 O -0.63 -38.32 15.78 -3.05 -0.05 -38.36 16 18 N -0.57 -30.56 5.29 -306.99 -1.62 -32.18 16 19 C -0.34 -20.03 9.68 84.04 0.81 -19.22 16 20 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.53 5.50 84.92 0.47 -0.06 16 22 N -0.92 -50.33 13.05 21.66 0.28 -50.04 16 23 Si 0.99 44.13 29.55 68.60 2.03 46.15 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 27 C -0.16 -2.76 4.38 -10.79 -0.05 -2.81 16 28 C -0.16 -2.67 10.18 30.62 0.31 -2.36 16 29 C -0.17 -2.97 10.13 30.62 0.31 -2.66 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.11 2.13 5.19 -4.93 -0.03 2.11 16 32 H 0.09 1.24 7.18 -2.39 -0.02 1.23 16 33 H 0.22 0.78 8.06 -2.91 -0.02 0.76 16 34 H 0.20 0.11 8.06 -2.91 -0.02 0.09 16 35 H 0.20 2.08 8.06 -2.91 -0.02 2.05 16 36 H 0.06 1.18 7.84 -2.39 -0.02 1.16 16 37 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.34 13.58 7.56 -89.69 -0.68 12.90 16 39 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 40 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 41 H 0.40 19.99 7.90 -92.71 -0.73 19.26 16 42 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.14 1.67 7.96 -2.39 -0.02 1.65 16 44 H 0.08 1.63 8.05 -2.39 -0.02 1.61 16 45 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -89.17 397.96 1.08 -88.09 By element: Atomic # 1 Polarization: 44.21 SS G_CDS: -0.40 Total: 43.81 kcal Atomic # 6 Polarization: 33.01 SS G_CDS: 8.54 Total: 41.54 kcal Atomic # 7 Polarization: -147.68 SS G_CDS: -8.98 Total: -156.66 kcal Atomic # 8 Polarization: -62.82 SS G_CDS: -0.11 Total: -62.93 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -89.17 1.08 -88.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331339692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.320 kcal (2) G-P(sol) polarization free energy of solvation -89.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds