Wall clock time and date at job start Wed Apr 1 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36738 * 127.13037 * 2 1 4 4 C 1.50692 * 126.35073 * 0.05495 * 3 2 1 5 5 C 1.53003 * 109.47364 * 269.98479 * 4 3 2 6 6 C 1.52994 * 109.47553 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47455 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99613 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00129 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99841 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99933 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.46993 * 90.00155 * 11 9 7 13 13 H 1.48502 * 109.47095 * 209.99897 * 11 9 7 14 14 H 1.48498 * 109.47077 * 329.99682 * 11 9 7 15 15 N 1.30302 * 107.30297 * 180.02562 * 3 2 1 16 16 N 1.28534 * 110.04959 * 359.97438 * 15 3 2 17 17 C 1.31216 * 109.86207 * 0.02562 * 16 15 3 18 18 N 1.38579 * 126.47356 * 179.97438 * 17 16 15 19 19 C 1.48526 * 110.99805 * 0.02562 * 18 17 16 20 20 C 1.54284 * 104.71026 * 200.73179 * 19 18 17 21 21 H 1.09001 * 112.64373 * 260.87043 * 20 19 18 22 22 C 1.51211 * 109.21185 * 134.86922 * 20 19 18 23 23 O 1.21234 * 125.31386 * 68.73949 * 22 20 19 24 24 N 1.35322 * 108.55988 * 248.91171 * 22 20 19 25 25 C 1.46498 * 122.52222 * 179.79796 * 24 22 20 26 26 C 1.33811 * 114.73843 * 359.53466 * 24 22 20 27 27 O 1.21223 * 125.30906 * 180.24769 * 26 24 22 28 28 C 1.51221 * 109.38068 * 0.29625 * 26 24 22 29 29 H 1.09000 * 112.68228 * 237.86859 * 28 26 24 30 30 C 1.48514 * 110.99932 * 244.62485 * 18 17 16 31 31 H 1.08998 * 109.47322 * 269.97208 * 1 2 3 32 32 H 1.08997 * 109.47515 * 29.97729 * 1 2 3 33 33 H 1.09006 * 109.47119 * 149.98096 * 1 2 3 34 34 H 1.08999 * 109.47287 * 29.98209 * 4 3 2 35 35 H 1.09001 * 109.47395 * 149.98479 * 4 3 2 36 36 H 1.09003 * 109.47135 * 300.00247 * 5 4 3 37 37 H 1.09001 * 109.46864 * 59.99675 * 5 4 3 38 38 H 1.09003 * 109.46903 * 300.00146 * 6 5 4 39 39 H 1.09001 * 109.47499 * 59.99820 * 6 5 4 40 40 H 0.97006 * 119.99418 * 179.97438 * 10 9 7 41 41 H 1.09002 * 110.38749 * 319.53657 * 19 18 17 42 42 H 1.08994 * 110.38964 * 81.91742 * 19 18 17 43 43 H 1.08997 * 109.46561 * 269.72471 * 25 24 22 44 44 H 1.08997 * 109.47369 * 29.71858 * 25 24 22 45 45 H 1.08998 * 109.47049 * 149.72728 * 25 24 22 46 46 H 1.08995 * 110.39077 * 278.07808 * 30 18 17 47 47 H 1.08998 * 110.39322 * 40.46194 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2904 1.0902 0.0000 4 6 1.8619 2.5349 0.0012 5 6 1.7162 3.0248 -1.4409 6 6 1.2818 4.4918 -1.4398 7 6 1.1388 4.9746 -2.8602 8 1 1.3375 4.3021 -3.6816 9 6 0.7534 6.2744 -3.1111 10 7 0.6291 6.6957 -4.3507 11 14 0.4090 7.4372 -1.6903 12 1 1.6601 8.1434 -1.3143 13 1 -0.6157 8.4305 -2.1008 14 1 -0.0911 6.6623 -0.5265 15 7 3.5162 0.6482 -0.0006 16 7 3.5211 -0.6371 -0.0004 17 6 2.2888 -1.0877 -0.0002 18 7 1.8978 -2.4172 -0.0005 19 6 3.0779 -3.3191 -0.0004 20 6 2.5418 -4.6658 -0.5289 21 1 2.3280 -5.3752 0.2705 22 6 3.5061 -5.2169 -1.5551 23 8 4.6211 -5.6297 -1.3183 24 7 2.9158 -5.1661 -2.7717 25 6 3.5857 -5.6231 -3.9918 26 6 1.6724 -4.6717 -2.7707 27 8 0.9682 -4.5443 -3.7491 28 6 1.2832 -4.2955 -1.3587 29 1 0.3852 -4.8113 -1.0186 30 6 1.1773 -2.7598 -1.2532 31 1 -0.3634 -0.0005 1.0276 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3634 -0.8899 -0.5142 34 1 0.9056 2.6299 0.5155 35 1 2.6121 3.1360 0.5150 36 1 2.6725 2.9299 -1.9554 37 1 0.9660 2.4237 -1.9548 38 1 0.3256 4.5872 -0.9253 39 1 2.0322 5.0927 -0.9261 40 1 0.3576 7.6102 -4.5272 41 1 3.8517 -2.9319 -0.6632 42 1 3.4666 -3.4357 1.0112 43 1 4.1276 -4.7913 -4.4419 44 1 4.2855 -6.4214 -3.7449 45 1 2.8425 -5.9962 -4.6964 46 1 0.1330 -2.4548 -1.1862 47 1 1.6579 -2.2864 -2.1093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350634480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:40 Heat of formation + Delta-G solvation = 34.890908 kcal Electronic energy + Delta-G solvation = -30564.582130 eV Core-core repulsion = 26363.707990 eV Total energy + Delta-G solvation = -4200.874140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.22475 -42.61987 -39.18163 -38.89053 -36.25895 -35.49418 -34.78507 -33.48148 -32.30391 -30.24967 -30.00509 -28.33726 -27.50939 -27.07289 -25.17402 -23.76558 -23.67910 -22.00781 -21.12843 -20.67180 -20.23278 -20.17305 -18.06215 -17.51938 -17.10437 -16.92633 -16.76183 -16.62269 -16.26586 -15.72432 -15.42830 -14.96050 -14.70315 -14.49767 -14.30244 -14.04697 -14.03996 -13.70993 -13.60085 -13.31188 -13.08382 -13.04089 -12.76267 -12.48744 -12.25437 -12.21845 -12.07130 -11.88296 -11.53528 -11.27060 -11.16627 -10.90068 -10.68102 -10.55704 -10.31734 -10.23207 -10.13339 -10.04284 -9.81062 -9.68216 -9.25766 -8.57980 -8.51349 -6.07990 -4.06886 0.88209 1.57260 1.82861 2.03749 2.16605 2.77242 3.16619 3.24127 3.28082 3.35552 3.36961 3.50462 3.51829 3.80343 4.21875 4.33872 4.41131 4.45677 4.50514 4.56564 4.62691 4.71845 4.81138 4.84480 4.89401 4.90627 5.00880 5.10387 5.16814 5.20593 5.25707 5.27482 5.31880 5.57844 5.62049 5.79407 5.86225 5.95468 6.17207 6.34740 6.40064 6.48424 6.67698 6.75678 6.92701 7.16040 7.20054 7.32741 7.73605 8.49093 8.73048 8.96623 9.53707 11.05477 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016334 B = 0.002272 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.844494 B =12318.731193 C =13004.977960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.476 5.476 3 C 0.208 3.792 4 C -0.039 4.039 5 C -0.095 4.095 6 C -0.012 4.012 7 C -0.522 4.522 8 H 0.071 0.929 9 C 0.066 3.934 10 N -0.903 5.903 11 Si 0.881 3.119 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.265 1.265 15 N -0.285 5.285 16 N -0.312 5.312 17 C 0.323 3.677 18 N -0.420 5.420 19 C 0.068 3.932 20 C -0.126 4.126 21 H 0.148 0.852 22 C 0.536 3.464 23 O -0.461 6.461 24 N -0.580 5.580 25 C 0.065 3.935 26 C 0.533 3.467 27 O -0.470 6.470 28 C -0.119 4.119 29 H 0.149 0.851 30 C 0.046 3.954 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.263 0.737 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.111 0.889 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 -27.582 9.994 29.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.170 5.170 3 C -0.059 4.059 4 C -0.079 4.079 5 C -0.134 4.134 6 C -0.050 4.050 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.135 4.135 10 N -0.542 5.542 11 Si 0.708 3.292 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.190 1.190 15 N -0.124 5.124 16 N -0.157 5.157 17 C -0.034 4.034 18 N -0.143 5.143 19 C -0.060 4.060 20 C -0.148 4.148 21 H 0.166 0.834 22 C 0.324 3.676 23 O -0.330 6.330 24 N -0.324 5.324 25 C -0.075 4.075 26 C 0.320 3.680 27 O -0.340 6.340 28 C -0.141 4.141 29 H 0.167 0.833 30 C -0.082 4.082 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.133 0.867 43 H 0.094 0.906 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.129 0.871 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.276 -27.662 9.916 29.386 hybrid contribution -1.238 0.724 -0.121 1.439 sum -1.514 -26.938 9.795 28.703 Atomic orbital electron populations 1.22216 0.75128 1.05414 1.04343 1.46074 1.08827 1.05606 1.56499 1.25269 0.86276 0.92041 1.02354 1.20406 1.02215 0.83825 1.01453 1.21483 1.01698 0.98767 0.91472 1.19573 0.95988 0.91200 0.98193 1.21100 1.46278 0.97348 0.91294 0.91121 1.25042 0.94851 0.98123 0.95497 1.69920 1.48021 1.17378 1.18850 0.86765 0.78408 0.80883 0.83131 1.20187 1.21428 1.18988 1.74051 1.17433 1.01951 1.18957 1.74546 1.15372 1.04155 1.21587 1.22458 0.87377 0.87131 1.06384 1.62243 1.20941 0.97458 1.33680 1.22891 0.91007 0.87210 1.04868 1.22973 0.93262 1.00160 0.98430 0.83400 1.20884 0.87027 0.76372 0.83287 1.90813 1.18028 1.42301 1.81873 1.46943 1.16910 1.57677 1.10855 1.22000 0.98785 1.01555 0.85197 1.20499 0.80481 0.75491 0.91530 1.90819 1.54378 1.49892 1.38878 1.22871 1.01015 0.98048 0.92158 0.83327 1.23161 1.01760 0.92304 0.90943 0.89785 0.88231 0.89367 0.90192 0.88260 0.91821 0.92977 0.96521 0.96583 0.92689 0.90187 0.86726 0.90635 0.89234 0.89221 0.87119 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 10.85 59.85 0.65 1.24 16 2 N -0.48 -5.97 3.21 -121.46 -0.39 -6.36 16 3 C 0.21 3.19 7.32 -154.01 -1.13 2.06 16 4 C -0.04 -0.58 5.42 -27.89 -0.15 -0.73 16 5 C -0.10 -1.78 5.13 -26.73 -0.14 -1.91 16 6 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16 7 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 10 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 11 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 14 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 15 N -0.29 -5.07 12.18 32.99 0.40 -4.67 16 16 N -0.31 -5.09 10.98 30.31 0.33 -4.76 16 17 C 0.32 4.19 6.99 -318.89 -2.23 1.96 16 18 N -0.42 -3.81 5.42 -170.28 -0.92 -4.73 16 19 C 0.07 0.56 5.64 -2.25 -0.01 0.55 16 20 C -0.13 -0.70 4.13 -89.67 -0.37 -1.07 16 21 H 0.15 0.39 8.14 -51.93 -0.42 -0.03 16 22 C 0.54 4.33 7.14 -10.49 -0.07 4.26 16 23 O -0.46 -5.04 17.55 5.60 0.10 -4.94 16 24 N -0.58 -4.55 2.99 -122.43 -0.37 -4.91 16 25 C 0.07 0.42 10.60 59.85 0.63 1.06 16 26 C 0.53 4.34 7.08 -11.16 -0.08 4.26 16 27 O -0.47 -5.26 17.47 5.61 0.10 -5.17 16 28 C -0.12 -0.64 4.17 -89.66 -0.37 -1.01 16 29 H 0.15 0.36 8.14 -51.93 -0.42 -0.07 16 30 C 0.05 0.34 5.47 -2.25 -0.01 0.33 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.83 7.88 -51.93 -0.41 0.42 16 33 H 0.09 0.54 5.56 -51.93 -0.29 0.25 16 34 H 0.08 1.00 7.92 -51.93 -0.41 0.59 16 35 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 39 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 41 H 0.08 0.86 7.02 -51.93 -0.36 0.50 16 42 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.50 7.86 -51.93 -0.41 0.09 16 45 H 0.09 0.52 7.82 -51.93 -0.41 0.11 16 46 H 0.11 0.62 6.11 -51.93 -0.32 0.31 16 47 H 0.07 0.66 7.55 -51.93 -0.39 0.26 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -37.09 385.01 -9.40 -46.49 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -6.73 Total: -3.90 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.83 Total: -2.49 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.17 Total: -52.27 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.20 Total: -10.11 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.09 -9.40 -46.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350634480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.385 kcal (2) G-P(sol) polarization free energy of solvation -37.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds