Wall clock time and date at job start Wed Apr 1 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36738 * 127.13037 * 2 1 4 4 C 1.50692 * 126.35073 * 0.05495 * 3 2 1 5 5 C 1.53003 * 109.47364 * 269.98479 * 4 3 2 6 6 C 1.52994 * 109.47553 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47455 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99613 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00129 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99841 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99933 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.46993 * 90.00155 * 11 9 7 13 13 H 1.48502 * 109.47095 * 209.99897 * 11 9 7 14 14 H 1.48498 * 109.47077 * 329.99682 * 11 9 7 15 15 N 1.30302 * 107.30297 * 180.02562 * 3 2 1 16 16 N 1.28534 * 110.04959 * 359.97438 * 15 3 2 17 17 C 1.31216 * 109.86207 * 0.02562 * 16 15 3 18 18 N 1.38579 * 126.47356 * 179.97438 * 17 16 15 19 19 C 1.48526 * 110.99805 * 0.02562 * 18 17 16 20 20 C 1.54284 * 104.71026 * 200.73179 * 19 18 17 21 21 H 1.09001 * 112.64373 * 260.87043 * 20 19 18 22 22 C 1.51211 * 109.21185 * 134.86922 * 20 19 18 23 23 O 1.21234 * 125.31386 * 68.73949 * 22 20 19 24 24 N 1.35322 * 108.55988 * 248.91171 * 22 20 19 25 25 C 1.46498 * 122.52222 * 179.79796 * 24 22 20 26 26 C 1.33811 * 114.73843 * 359.53466 * 24 22 20 27 27 O 1.21223 * 125.30906 * 180.24769 * 26 24 22 28 28 C 1.51221 * 109.38068 * 0.29625 * 26 24 22 29 29 H 1.09000 * 112.68228 * 237.86859 * 28 26 24 30 30 C 1.48514 * 110.99932 * 244.62485 * 18 17 16 31 31 H 1.08998 * 109.47322 * 269.97208 * 1 2 3 32 32 H 1.08997 * 109.47515 * 29.97729 * 1 2 3 33 33 H 1.09006 * 109.47119 * 149.98096 * 1 2 3 34 34 H 1.08999 * 109.47287 * 29.98209 * 4 3 2 35 35 H 1.09001 * 109.47395 * 149.98479 * 4 3 2 36 36 H 1.09003 * 109.47135 * 300.00247 * 5 4 3 37 37 H 1.09001 * 109.46864 * 59.99675 * 5 4 3 38 38 H 1.09003 * 109.46903 * 300.00146 * 6 5 4 39 39 H 1.09001 * 109.47499 * 59.99820 * 6 5 4 40 40 H 0.97006 * 119.99418 * 179.97438 * 10 9 7 41 41 H 1.09002 * 110.38749 * 319.53657 * 19 18 17 42 42 H 1.08994 * 110.38964 * 81.91742 * 19 18 17 43 43 H 1.08997 * 109.46561 * 269.72471 * 25 24 22 44 44 H 1.08997 * 109.47369 * 29.71858 * 25 24 22 45 45 H 1.08998 * 109.47049 * 149.72728 * 25 24 22 46 46 H 1.08995 * 110.39077 * 278.07808 * 30 18 17 47 47 H 1.08998 * 110.39322 * 40.46194 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2904 1.0902 0.0000 4 6 1.8619 2.5349 0.0012 5 6 1.7162 3.0248 -1.4409 6 6 1.2818 4.4918 -1.4398 7 6 1.1388 4.9746 -2.8602 8 1 1.3375 4.3021 -3.6816 9 6 0.7534 6.2744 -3.1111 10 7 0.6291 6.6957 -4.3507 11 14 0.4090 7.4372 -1.6903 12 1 1.6601 8.1434 -1.3143 13 1 -0.6157 8.4305 -2.1008 14 1 -0.0911 6.6623 -0.5265 15 7 3.5162 0.6482 -0.0006 16 7 3.5211 -0.6371 -0.0004 17 6 2.2888 -1.0877 -0.0002 18 7 1.8978 -2.4172 -0.0005 19 6 3.0779 -3.3191 -0.0004 20 6 2.5418 -4.6658 -0.5289 21 1 2.3280 -5.3752 0.2705 22 6 3.5061 -5.2169 -1.5551 23 8 4.6211 -5.6297 -1.3183 24 7 2.9158 -5.1661 -2.7717 25 6 3.5857 -5.6231 -3.9918 26 6 1.6724 -4.6717 -2.7707 27 8 0.9682 -4.5443 -3.7491 28 6 1.2832 -4.2955 -1.3587 29 1 0.3852 -4.8113 -1.0186 30 6 1.1773 -2.7598 -1.2532 31 1 -0.3634 -0.0005 1.0276 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3634 -0.8899 -0.5142 34 1 0.9056 2.6299 0.5155 35 1 2.6121 3.1360 0.5150 36 1 2.6725 2.9299 -1.9554 37 1 0.9660 2.4237 -1.9548 38 1 0.3256 4.5872 -0.9253 39 1 2.0322 5.0927 -0.9261 40 1 0.3576 7.6102 -4.5272 41 1 3.8517 -2.9319 -0.6632 42 1 3.4666 -3.4357 1.0112 43 1 4.1276 -4.7913 -4.4419 44 1 4.2855 -6.4214 -3.7449 45 1 2.8425 -5.9962 -4.6964 46 1 0.1330 -2.4548 -1.1862 47 1 1.6579 -2.2864 -2.1093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350634480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:39 Heat of formation + Delta-G solvation = 9.853415 kcal Electronic energy + Delta-G solvation = -30565.667837 eV Core-core repulsion = 26363.707990 eV Total energy + Delta-G solvation = -4201.959847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.19848 -43.33467 -39.90843 -39.61974 -37.00425 -36.82943 -35.91935 -34.66859 -33.86509 -31.42539 -30.83876 -29.30270 -28.48416 -28.03201 -25.90258 -25.31984 -24.46847 -22.73983 -22.14093 -21.96917 -21.45681 -20.90091 -18.91811 -18.67762 -18.27832 -17.78010 -17.65412 -17.50342 -17.18627 -16.51426 -16.29270 -16.13063 -15.86089 -15.55828 -15.38535 -15.16214 -14.82994 -14.68704 -14.47966 -14.35159 -13.99016 -13.94352 -13.68990 -13.60821 -13.42146 -13.10019 -12.87232 -12.84767 -12.74698 -12.57502 -12.47912 -11.96540 -11.78899 -11.75329 -11.68049 -11.49827 -11.34205 -11.22725 -11.17049 -10.99418 -10.83407 -10.74505 -9.57915 -8.27328 -6.32530 0.22178 0.59575 1.05732 1.36549 1.40903 1.42497 1.45555 1.54228 1.66278 2.39395 2.48408 2.61930 2.85424 2.98027 3.08835 3.26454 3.32852 3.62499 3.72516 3.83479 3.87924 3.98649 4.06891 4.13132 4.24181 4.25257 4.28260 4.31186 4.34253 4.47532 4.52670 4.60432 4.63352 4.64382 4.72121 4.73019 4.86515 4.93870 5.02856 5.04821 5.10799 5.32279 5.49113 5.56211 5.59223 5.67996 5.99809 6.04335 6.29418 6.51687 6.76180 7.32272 7.62543 8.89927 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016334 B = 0.002272 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.844494 B =12318.731193 C =13004.977960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.472 5.472 3 C 0.198 3.802 4 C -0.026 4.026 5 C -0.084 4.084 6 C -0.009 4.009 7 C -0.535 4.535 8 H 0.023 0.977 9 C -0.001 4.001 10 N -0.957 5.957 11 Si 0.955 3.045 12 H -0.271 1.271 13 H -0.287 1.287 14 H -0.232 1.232 15 N -0.328 5.328 16 N -0.353 5.353 17 C 0.336 3.664 18 N -0.403 5.403 19 C 0.064 3.936 20 C -0.107 4.107 21 H 0.191 0.809 22 C 0.536 3.464 23 O -0.494 6.494 24 N -0.585 5.585 25 C 0.059 3.941 26 C 0.531 3.469 27 O -0.503 6.503 28 C -0.101 4.101 29 H 0.195 0.805 30 C 0.043 3.957 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.034 0.966 37 H 0.051 0.949 38 H 0.038 0.962 39 H 0.023 0.977 40 H 0.266 0.734 41 H 0.048 0.952 42 H 0.124 0.876 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.138 0.862 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.137 -28.796 13.380 32.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.166 5.166 3 C -0.071 4.071 4 C -0.065 4.065 5 C -0.123 4.123 6 C -0.046 4.046 7 C -0.573 4.573 8 H 0.041 0.959 9 C -0.197 4.197 10 N -0.598 5.598 11 Si 0.778 3.222 12 H -0.196 1.196 13 H -0.213 1.213 14 H -0.154 1.154 15 N -0.167 5.167 16 N -0.197 5.197 17 C -0.022 4.022 18 N -0.127 5.127 19 C -0.064 4.064 20 C -0.129 4.129 21 H 0.209 0.791 22 C 0.325 3.675 23 O -0.365 6.365 24 N -0.328 5.328 25 C -0.081 4.081 26 C 0.321 3.679 27 O -0.376 6.376 28 C -0.122 4.122 29 H 0.212 0.788 30 C -0.085 4.085 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.142 0.858 43 H 0.088 0.912 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.156 0.844 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.777 -28.907 13.315 31.947 hybrid contribution -0.424 0.990 -1.332 1.713 sum -3.201 -27.917 11.983 30.548 Atomic orbital electron populations 1.22620 0.72384 1.06641 1.06365 1.46262 1.10285 1.04531 1.55493 1.25202 0.86305 0.92761 1.02824 1.20232 1.04111 0.83578 0.98602 1.21234 0.99965 0.96844 0.94209 1.19524 0.97229 0.93264 0.94621 1.21506 1.45691 0.96977 0.93106 0.95898 1.26124 0.94597 1.00301 0.98682 1.70099 1.49761 1.18088 1.21806 0.85585 0.78430 0.78242 0.79942 1.19598 1.21342 1.15425 1.73939 1.19350 1.02991 1.20401 1.74447 1.17577 1.03822 1.23891 1.22826 0.86754 0.88598 1.04001 1.62399 1.20825 0.95413 1.34070 1.22919 0.90322 0.88273 1.04880 1.23049 0.92031 0.99186 0.98613 0.79140 1.21321 0.86850 0.75546 0.83743 1.90800 1.19493 1.43864 1.82336 1.47116 1.17102 1.57349 1.11264 1.22095 0.99155 1.01661 0.85212 1.20973 0.80048 0.74569 0.92347 1.90807 1.55193 1.51318 1.40289 1.22999 1.02599 0.96645 0.89936 0.78785 1.23274 1.02527 0.93681 0.88973 0.87296 0.88190 0.87102 0.86808 0.88010 0.94716 0.93034 0.94394 0.95827 0.92576 0.93313 0.85813 0.91179 0.88409 0.88568 0.84443 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.78 10.85 127.77 1.39 2.16 16 2 N -0.47 -10.94 3.21 -538.20 -1.73 -12.67 16 3 C 0.20 5.91 7.32 137.63 1.01 6.92 16 4 C -0.03 -0.71 5.42 29.85 0.16 -0.55 16 5 C -0.08 -3.08 5.13 30.59 0.16 -2.93 16 6 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 7 C -0.53 -30.46 9.66 25.60 0.25 -30.22 16 8 H 0.02 1.46 7.99 -2.91 -0.02 1.44 16 9 C 0.00 -0.05 5.47 84.65 0.46 0.41 16 10 N -0.96 -60.26 13.96 21.45 0.30 -59.96 16 11 Si 0.96 42.71 27.47 68.60 1.88 44.60 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 14 H -0.23 -9.04 6.54 99.48 0.65 -8.39 16 15 N -0.33 -11.86 12.18 -49.54 -0.60 -12.47 16 16 N -0.35 -11.70 10.98 -58.01 -0.64 -12.33 16 17 C 0.34 8.34 6.99 260.12 1.82 10.16 16 18 N -0.40 -6.36 5.42 -692.65 -3.75 -10.12 16 19 C 0.06 0.95 5.64 86.42 0.49 1.44 16 20 C -0.11 -0.87 4.13 -10.18 -0.04 -0.91 16 21 H 0.19 0.02 8.14 -2.39 -0.02 0.00 16 22 C 0.54 8.08 7.14 87.73 0.63 8.71 16 23 O -0.49 -10.67 17.55 -2.89 -0.05 -10.72 16 24 N -0.59 -8.80 2.99 -778.32 -2.32 -11.13 16 25 C 0.06 0.79 10.60 127.77 1.35 2.14 16 26 C 0.53 7.90 7.08 87.97 0.62 8.52 16 27 O -0.50 -10.90 17.47 -2.85 -0.05 -10.95 16 28 C -0.10 -0.73 4.17 -10.17 -0.04 -0.77 16 29 H 0.20 -0.22 8.14 -2.39 -0.02 -0.24 16 30 C 0.04 0.52 5.47 86.43 0.47 1.00 16 31 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.10 1.33 7.88 -2.39 -0.02 1.31 16 33 H 0.11 0.89 5.56 -2.38 -0.01 0.88 16 34 H 0.11 2.39 7.92 -2.39 -0.02 2.37 16 35 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.04 1.51 7.20 -2.39 -0.02 1.49 16 39 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 40 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 41 H 0.05 1.07 7.02 -2.39 -0.02 1.06 16 42 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.10 1.11 7.86 -2.39 -0.02 1.09 16 45 H 0.10 1.13 7.82 -2.39 -0.02 1.11 16 46 H 0.14 0.97 6.11 -2.39 -0.01 0.96 16 47 H 0.04 0.71 7.55 -2.39 -0.02 0.69 16 Total: -1.00 -86.82 385.01 2.82 -84.00 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 0.94 Total: 5.94 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 8.84 Total: 5.80 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -8.75 Total: -118.67 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.10 Total: -21.67 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.88 Total: 44.60 kcal Total: -86.82 2.82 -84.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350634480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.852 kcal (2) G-P(sol) polarization free energy of solvation -86.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds