Wall clock time and date at job start Wed Apr 1 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00318 * 2 1 4 4 C 1.46906 * 110.99921 * 123.95342 * 2 1 3 5 5 C 1.53000 * 109.47153 * 66.04358 * 4 2 1 6 6 C 1.53002 * 109.47119 * 180.02562 * 5 4 2 7 7 N 1.46506 * 109.46842 * 180.02562 * 6 5 4 8 8 C 1.46498 * 119.99704 * 269.99470 * 7 6 5 9 9 C 1.50698 * 109.47204 * 275.73393 * 8 7 6 10 10 H 1.08003 * 120.00019 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00301 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99757 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00320 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47031 * 59.99866 * 13 11 9 15 15 H 1.48498 * 109.47216 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47091 * 299.99679 * 13 11 9 17 17 C 1.34780 * 119.99821 * 89.99888 * 7 6 5 18 18 O 1.21570 * 120.00098 * 4.71884 * 17 7 6 19 19 C 1.47653 * 119.99487 * 184.71800 * 17 7 6 20 20 C 1.39799 * 121.07975 * 307.06876 * 19 17 7 21 21 C 1.38171 * 119.35973 * 179.73149 * 20 19 17 22 22 N 1.31838 * 121.55842 * 359.97199 * 21 20 19 23 23 C 1.31983 * 121.97993 * 0.03133 * 22 21 20 24 24 N 1.38271 * 133.71471 * 179.97438 * 23 22 21 25 25 H 0.97003 * 126.37838 * 359.97438 * 24 23 22 26 26 C 1.36383 * 107.23211 * 180.02562 * 24 23 22 27 27 O 1.35182 * 125.05616 * 179.97438 * 26 24 23 28 28 N 1.30994 * 109.88679 * 359.95327 * 26 24 23 29 29 C 1.34627 * 109.66236 * 0.04302 * 28 26 24 30 30 H 1.09002 * 109.47365 * 296.05034 * 1 2 3 31 31 H 1.09007 * 109.46873 * 56.05009 * 1 2 3 32 32 H 1.09004 * 109.47556 * 176.04676 * 1 2 3 33 33 H 1.08997 * 109.46925 * 183.95299 * 3 2 1 34 34 H 1.08996 * 109.46770 * 303.95336 * 3 2 1 35 35 H 1.08999 * 109.47066 * 63.95122 * 3 2 1 36 36 H 1.09007 * 109.46885 * 306.04910 * 4 2 1 37 37 H 1.08993 * 109.47373 * 186.04605 * 4 2 1 38 38 H 1.09002 * 109.47157 * 60.00246 * 5 4 2 39 39 H 1.09002 * 109.47304 * 300.00120 * 5 4 2 40 40 H 1.08995 * 109.47563 * 60.00109 * 6 5 4 41 41 H 1.09002 * 109.46732 * 299.99982 * 6 5 4 42 42 H 1.08998 * 109.47234 * 35.73628 * 8 7 6 43 43 H 1.08998 * 109.46967 * 155.73586 * 8 7 6 44 44 H 0.96997 * 120.00139 * 180.02562 * 12 11 9 45 45 H 1.07997 * 120.31949 * 359.70699 * 20 19 17 46 46 H 1.07995 * 119.21798 * 180.02562 * 21 20 19 47 47 H 0.96702 * 113.99784 * 269.92994 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6313 -2.2426 0.9704 6 6 2.1791 -3.0403 2.1556 7 7 1.8310 -4.4543 1.9951 8 6 0.5741 -4.9664 2.5467 9 6 0.7674 -5.3118 4.0007 10 1 1.7301 -5.1643 4.4675 11 6 -0.2848 -5.8162 4.7353 12 7 -1.4573 -5.9954 4.1671 13 14 -0.0454 -6.2437 6.5379 14 1 0.3631 -5.0272 7.2851 15 1 -1.3194 -6.7629 7.0969 16 1 1.0102 -7.2805 6.6648 17 6 2.6671 -5.2840 1.3402 18 8 3.7481 -4.8801 0.9576 19 6 2.2702 -6.6836 1.0873 20 6 1.8390 -7.5108 2.1286 21 6 1.4707 -8.8132 1.8509 22 7 1.5152 -9.2964 0.6250 23 6 1.9130 -8.5664 -0.4001 24 7 2.0532 -8.8150 -1.7530 25 1 1.8619 -9.6505 -2.2073 26 6 2.5115 -7.6671 -2.3294 27 8 2.7750 -7.5109 -3.6460 28 7 2.6580 -6.7383 -1.4174 29 6 2.3077 -7.2269 -0.2128 30 1 -0.3634 0.4513 0.9233 31 1 -0.3633 0.5740 -0.8525 32 1 -0.3634 -1.0252 -0.0709 33 1 3.0828 1.3431 -0.0708 34 1 1.5898 1.9163 -0.8524 35 1 1.7044 1.8724 0.9233 36 1 1.5609 -0.3872 2.0629 37 1 3.0796 -0.6612 1.1757 38 1 2.0657 -2.6214 0.0452 39 1 0.5470 -2.3475 0.9324 40 1 1.7444 -2.6615 3.0806 41 1 3.2634 -2.9355 2.1940 42 1 -0.2003 -4.2049 2.4539 43 1 0.2735 -5.8590 1.9981 44 1 -2.1976 -6.3499 4.6839 45 1 1.7947 -7.1355 3.1403 46 1 1.1375 -9.4501 2.6569 47 1 3.6840 -7.7289 -3.8937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361969109.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:57 Heat of formation + Delta-G solvation = 28.792465 kcal Electronic energy + Delta-G solvation = -31071.181842 eV Core-core repulsion = 26870.043253 eV Total energy + Delta-G solvation = -4201.138588 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.22410 -39.42017 -38.34213 -37.49142 -36.81622 -35.17367 -33.60378 -32.91760 -31.77526 -30.67310 -29.02105 -27.57427 -27.40335 -26.14467 -24.12613 -23.03977 -22.92349 -22.55445 -21.53975 -20.58675 -19.57319 -18.81123 -17.75779 -17.05551 -16.67365 -16.54230 -15.87867 -15.57627 -15.48226 -15.12115 -14.97365 -14.66581 -14.44785 -14.33945 -14.01316 -13.71588 -13.62256 -12.92962 -12.63646 -12.36610 -12.33936 -12.16295 -12.07433 -11.93814 -11.68992 -11.52991 -11.42484 -11.20740 -11.14725 -10.97557 -10.93658 -10.73580 -10.66846 -10.29694 -10.06886 -9.81433 -9.52206 -8.82100 -8.69039 -8.40356 -8.27963 -8.18881 -7.73780 -6.25003 -4.33990 0.73941 1.53244 2.18297 2.70463 3.18908 3.25871 3.27289 3.36396 3.67356 3.74654 4.09786 4.16913 4.27487 4.51427 4.87685 5.02717 5.06977 5.14805 5.21009 5.21145 5.34716 5.42704 5.46240 5.61068 5.70059 5.75937 5.79653 5.83033 5.90797 5.96274 6.06643 6.10994 6.18086 6.22057 6.46540 6.53599 6.57617 6.67568 6.77517 6.96119 7.09934 7.13130 7.17834 7.48198 7.50915 7.68445 7.77893 7.97978 8.07886 8.27940 8.71399 8.94917 9.33315 10.80642 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006114 B = 0.005042 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4578.715842 B = 5551.975627 C = 9295.738027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.026 3.974 4 C 0.060 3.940 5 C -0.130 4.130 6 C 0.124 3.876 7 N -0.586 5.586 8 C 0.232 3.768 9 C -0.544 4.544 10 H 0.064 0.936 11 C 0.070 3.930 12 N -0.883 5.883 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.564 3.436 18 O -0.547 6.547 19 C -0.021 4.021 20 C -0.119 4.119 21 C 0.137 3.863 22 N -0.479 5.479 23 C 0.239 3.761 24 N -0.590 5.590 25 H 0.425 0.575 26 C 0.452 3.548 27 O -0.438 6.438 28 N -0.461 5.461 29 C 0.052 3.948 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.023 0.977 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.042 0.958 44 H 0.267 0.733 45 H 0.181 0.819 46 H 0.172 0.828 47 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.905 0.436 -8.548 9.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.068 4.068 5 C -0.169 4.169 6 C 0.000 4.000 7 N -0.316 5.316 8 C 0.112 3.888 9 C -0.582 4.582 10 H 0.083 0.917 11 C -0.134 4.134 12 N -0.520 5.520 13 Si 0.720 3.280 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.351 3.649 18 O -0.426 6.426 19 C -0.035 4.035 20 C -0.142 4.142 21 C -0.027 4.027 22 N -0.193 5.193 23 C 0.003 3.997 24 N -0.218 5.218 25 H 0.264 0.736 26 C 0.148 3.852 27 O -0.239 6.239 28 N -0.191 5.191 29 C -0.070 4.070 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.198 0.802 46 H 0.189 0.811 47 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 4.912 0.606 -9.617 10.816 hybrid contribution -0.211 -0.428 1.592 1.663 sum 4.701 0.178 -8.025 9.302 Atomic orbital electron populations 1.22437 0.87422 1.02786 1.00031 1.61963 1.08089 1.13353 1.43792 1.22361 1.00719 0.89089 1.00120 1.22066 1.00040 0.93872 0.90836 1.21951 1.01596 0.93269 1.00072 1.21213 1.00645 0.80532 0.97564 1.48075 1.22468 1.08045 1.52975 1.19576 0.79740 0.95702 0.93775 1.21429 0.97492 1.44227 0.95045 0.91746 1.24941 0.94851 0.95159 0.98477 1.69925 1.01452 1.43721 1.36870 0.86630 0.77638 0.79079 0.84642 1.20122 1.21136 1.19753 1.17858 0.84332 0.84595 0.78118 1.90717 1.22369 1.76778 1.52771 1.19533 0.98361 0.95456 0.90111 1.22978 0.95036 0.93774 1.02375 1.22544 0.95134 0.93834 0.91186 1.66146 1.16407 1.38245 0.98487 1.18472 1.03664 0.92581 0.84988 1.42913 1.58648 1.14464 1.05806 0.73560 1.20209 0.97945 0.81753 0.85321 1.84818 1.36279 1.88051 1.14772 1.70377 1.22613 1.28185 0.97954 1.18964 1.03943 0.91967 0.92161 0.95685 0.91807 0.90748 0.91454 0.91674 0.95890 0.94698 0.90742 0.90929 0.91735 0.90214 0.90754 0.94760 0.93980 0.92300 0.80201 0.81111 0.73257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.32 60.06 0.56 0.83 16 2 N -0.55 -7.52 5.02 -251.26 -1.26 -8.78 16 3 C 0.03 0.28 9.57 60.07 0.57 0.85 16 4 C 0.06 0.86 4.96 -3.82 -0.02 0.84 16 5 C -0.13 -2.20 5.46 -26.73 -0.15 -2.35 16 6 C 0.12 2.30 5.46 -4.04 -0.02 2.28 16 7 N -0.59 -12.46 2.46 -176.25 -0.43 -12.89 16 8 C 0.23 5.34 4.68 -5.20 -0.02 5.31 16 9 C -0.54 -12.95 7.06 -34.44 -0.24 -13.19 16 10 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 11 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.88 -22.79 13.29 55.43 0.74 -22.05 16 13 Si 0.89 18.99 29.54 -169.99 -5.02 13.97 16 14 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 15 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 17 C 0.56 12.57 7.25 -12.42 -0.09 12.48 16 18 O -0.55 -13.21 16.64 5.30 0.09 -13.12 16 19 C -0.02 -0.45 4.80 -104.44 -0.50 -0.95 16 20 C -0.12 -2.28 7.75 -39.02 -0.30 -2.58 16 21 C 0.14 2.30 11.14 -17.57 -0.20 2.11 16 22 N -0.48 -8.21 10.35 -12.25 -0.13 -8.33 16 23 C 0.24 4.15 8.46 -155.41 -1.32 2.84 16 24 N -0.59 -7.92 6.26 -13.33 -0.08 -8.00 16 25 H 0.42 4.05 8.96 -40.82 -0.37 3.68 16 26 C 0.45 6.60 9.39 -88.73 -0.83 5.76 16 27 O -0.44 -4.60 13.62 -17.24 -0.23 -4.84 16 28 N -0.46 -8.85 11.26 -12.07 -0.14 -8.99 16 29 C 0.05 1.04 6.99 -84.60 -0.59 0.45 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.70 8.12 -51.92 -0.42 0.28 16 32 H 0.07 1.02 6.47 -51.93 -0.34 0.68 16 33 H 0.07 0.70 8.12 -51.93 -0.42 0.27 16 34 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 35 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.03 0.48 8.12 -51.92 -0.42 0.06 16 37 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.06 1.13 6.55 -51.93 -0.34 0.79 16 40 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 41 H 0.07 1.38 7.36 -51.93 -0.38 1.00 16 42 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 43 H 0.04 1.03 5.62 -51.93 -0.29 0.73 16 44 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 45 H 0.18 3.60 5.40 -52.49 -0.28 3.32 16 46 H 0.17 2.31 8.06 -52.49 -0.42 1.89 16 47 H 0.41 1.91 9.06 45.56 0.41 2.33 16 LS Contribution 392.28 15.07 5.91 5.91 Total: -1.00 -32.39 392.28 -9.58 -41.97 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.77 Total: 8.88 kcal Atomic # 6 Polarization: 19.54 SS G_CDS: -3.25 Total: 16.29 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -1.30 Total: -69.05 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.15 Total: -17.96 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.39 -9.58 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361969109.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.760 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds