Wall clock time and date at job start Wed Apr 1 2020 05:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00318 * 2 1 4 4 C 1.46906 * 110.99921 * 123.95342 * 2 1 3 5 5 C 1.53000 * 109.47153 * 66.04358 * 4 2 1 6 6 C 1.53002 * 109.47119 * 180.02562 * 5 4 2 7 7 N 1.46506 * 109.46842 * 180.02562 * 6 5 4 8 8 C 1.46498 * 119.99704 * 269.99470 * 7 6 5 9 9 C 1.50698 * 109.47204 * 275.73393 * 8 7 6 10 10 H 1.08003 * 120.00019 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00301 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99757 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00320 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47031 * 59.99866 * 13 11 9 15 15 H 1.48498 * 109.47216 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47091 * 299.99679 * 13 11 9 17 17 C 1.34780 * 119.99821 * 89.99888 * 7 6 5 18 18 O 1.21570 * 120.00098 * 4.71884 * 17 7 6 19 19 C 1.47653 * 119.99487 * 184.71800 * 17 7 6 20 20 C 1.39799 * 121.07975 * 307.06876 * 19 17 7 21 21 C 1.38171 * 119.35973 * 179.73149 * 20 19 17 22 22 N 1.31838 * 121.55842 * 359.97199 * 21 20 19 23 23 C 1.31983 * 121.97993 * 0.03133 * 22 21 20 24 24 N 1.38271 * 133.71471 * 179.97438 * 23 22 21 25 25 H 0.97003 * 126.37838 * 359.97438 * 24 23 22 26 26 C 1.36383 * 107.23211 * 180.02562 * 24 23 22 27 27 O 1.35182 * 125.05616 * 179.97438 * 26 24 23 28 28 N 1.30994 * 109.88679 * 359.95327 * 26 24 23 29 29 C 1.34627 * 109.66236 * 0.04302 * 28 26 24 30 30 H 1.09002 * 109.47365 * 296.05034 * 1 2 3 31 31 H 1.09007 * 109.46873 * 56.05009 * 1 2 3 32 32 H 1.09004 * 109.47556 * 176.04676 * 1 2 3 33 33 H 1.08997 * 109.46925 * 183.95299 * 3 2 1 34 34 H 1.08996 * 109.46770 * 303.95336 * 3 2 1 35 35 H 1.08999 * 109.47066 * 63.95122 * 3 2 1 36 36 H 1.09007 * 109.46885 * 306.04910 * 4 2 1 37 37 H 1.08993 * 109.47373 * 186.04605 * 4 2 1 38 38 H 1.09002 * 109.47157 * 60.00246 * 5 4 2 39 39 H 1.09002 * 109.47304 * 300.00120 * 5 4 2 40 40 H 1.08995 * 109.47563 * 60.00109 * 6 5 4 41 41 H 1.09002 * 109.46732 * 299.99982 * 6 5 4 42 42 H 1.08998 * 109.47234 * 35.73628 * 8 7 6 43 43 H 1.08998 * 109.46967 * 155.73586 * 8 7 6 44 44 H 0.96997 * 120.00139 * 180.02562 * 12 11 9 45 45 H 1.07997 * 120.31949 * 359.70699 * 20 19 17 46 46 H 1.07995 * 119.21798 * 180.02562 * 21 20 19 47 47 H 0.96702 * 113.99784 * 269.92994 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6313 -2.2426 0.9704 6 6 2.1791 -3.0403 2.1556 7 7 1.8310 -4.4543 1.9951 8 6 0.5741 -4.9664 2.5467 9 6 0.7674 -5.3118 4.0007 10 1 1.7301 -5.1643 4.4675 11 6 -0.2848 -5.8162 4.7353 12 7 -1.4573 -5.9954 4.1671 13 14 -0.0454 -6.2437 6.5379 14 1 0.3631 -5.0272 7.2851 15 1 -1.3194 -6.7629 7.0969 16 1 1.0102 -7.2805 6.6648 17 6 2.6671 -5.2840 1.3402 18 8 3.7481 -4.8801 0.9576 19 6 2.2702 -6.6836 1.0873 20 6 1.8390 -7.5108 2.1286 21 6 1.4707 -8.8132 1.8509 22 7 1.5152 -9.2964 0.6250 23 6 1.9130 -8.5664 -0.4001 24 7 2.0532 -8.8150 -1.7530 25 1 1.8619 -9.6505 -2.2073 26 6 2.5115 -7.6671 -2.3294 27 8 2.7750 -7.5109 -3.6460 28 7 2.6580 -6.7383 -1.4174 29 6 2.3077 -7.2269 -0.2128 30 1 -0.3634 0.4513 0.9233 31 1 -0.3633 0.5740 -0.8525 32 1 -0.3634 -1.0252 -0.0709 33 1 3.0828 1.3431 -0.0708 34 1 1.5898 1.9163 -0.8524 35 1 1.7044 1.8724 0.9233 36 1 1.5609 -0.3872 2.0629 37 1 3.0796 -0.6612 1.1757 38 1 2.0657 -2.6214 0.0452 39 1 0.5470 -2.3475 0.9324 40 1 1.7444 -2.6615 3.0806 41 1 3.2634 -2.9355 2.1940 42 1 -0.2003 -4.2049 2.4539 43 1 0.2735 -5.8590 1.9981 44 1 -2.1976 -6.3499 4.6839 45 1 1.7947 -7.1355 3.1403 46 1 1.1375 -9.4501 2.6569 47 1 3.6840 -7.7289 -3.8937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361969109.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:54 Heat of formation + Delta-G solvation = 2.355705 kcal Electronic energy + Delta-G solvation = -31072.328226 eV Core-core repulsion = 26870.043253 eV Total energy + Delta-G solvation = -4202.284972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.52276 -41.00719 -39.63343 -38.63905 -37.93785 -36.88562 -35.02354 -34.62729 -33.25503 -32.06681 -30.37767 -29.23222 -28.49629 -27.52878 -25.53093 -24.80438 -24.27453 -23.82462 -22.83573 -21.81204 -20.95588 -20.00810 -19.22817 -18.45691 -18.38951 -18.09155 -17.30835 -16.96242 -16.80217 -16.47693 -16.20855 -16.16772 -15.80484 -15.55693 -15.35849 -15.17255 -14.93291 -14.47088 -14.28872 -13.76757 -13.55268 -13.41992 -13.30037 -13.22136 -13.10164 -12.96505 -12.70973 -12.62456 -12.56563 -12.42566 -12.38361 -12.21505 -12.04192 -11.93632 -11.67673 -11.50827 -11.18040 -10.55106 -10.28385 -9.86760 -9.55985 -9.46233 -9.31567 -8.13718 -6.29035 -0.61462 0.12873 1.02188 1.41815 1.51234 1.53606 1.60110 1.72872 2.15596 2.47991 2.51409 2.74603 3.01723 3.15987 3.23482 3.57317 3.64016 3.87721 3.92270 4.08600 4.13692 4.22418 4.37440 4.42042 4.47770 4.54708 4.60406 4.66072 4.69257 4.73554 4.79138 4.83255 4.88710 4.99597 5.00654 5.09924 5.13791 5.20900 5.28374 5.51870 5.70403 5.76421 5.81783 6.04099 6.08295 6.12189 6.48448 6.50961 6.52522 6.77011 6.82185 7.20418 7.42618 8.91836 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006114 B = 0.005042 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4578.715842 B = 5551.975627 C = 9295.738027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.567 5.567 3 C 0.026 3.974 4 C 0.068 3.932 5 C -0.114 4.114 6 C 0.122 3.878 7 N -0.588 5.588 8 C 0.250 3.750 9 C -0.543 4.543 10 H 0.061 0.939 11 C 0.035 3.965 12 N -0.913 5.913 13 Si 0.952 3.048 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.260 1.260 17 C 0.561 3.439 18 O -0.575 6.575 19 C -0.054 4.054 20 C -0.121 4.121 21 C 0.138 3.862 22 N -0.470 5.470 23 C 0.234 3.766 24 N -0.567 5.567 25 H 0.445 0.555 26 C 0.484 3.516 27 O -0.430 6.430 28 N -0.517 5.517 29 C 0.032 3.968 30 H 0.030 0.970 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.014 0.986 43 H 0.028 0.972 44 H 0.268 0.732 45 H 0.168 0.832 46 H 0.205 0.795 47 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.090 -0.230 -8.964 10.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.291 5.291 3 C -0.122 4.122 4 C -0.060 4.060 5 C -0.153 4.153 6 C -0.001 4.001 7 N -0.317 5.317 8 C 0.130 3.870 9 C -0.581 4.581 10 H 0.079 0.921 11 C -0.167 4.167 12 N -0.551 5.551 13 Si 0.777 3.223 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.184 1.184 17 C 0.349 3.651 18 O -0.456 6.456 19 C -0.067 4.067 20 C -0.143 4.143 21 C -0.027 4.027 22 N -0.184 5.184 23 C -0.003 4.003 24 N -0.198 5.198 25 H 0.290 0.710 26 C 0.179 3.821 27 O -0.235 6.235 28 N -0.249 5.249 29 C -0.090 4.090 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.032 0.968 43 H 0.046 0.954 44 H 0.077 0.923 45 H 0.185 0.815 46 H 0.222 0.778 47 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 5.123 -0.082 -10.077 11.304 hybrid contribution -0.241 -0.214 1.522 1.555 sum 4.882 -0.296 -8.555 9.854 Atomic orbital electron populations 1.22428 0.87005 1.02012 1.01105 1.61940 1.08688 1.15072 1.43433 1.22420 1.01051 0.87544 1.01173 1.21940 1.00508 0.91920 0.91661 1.21751 1.00482 0.95121 0.97931 1.21351 1.00684 0.79513 0.98532 1.48122 1.21780 1.09086 1.52677 1.19229 0.79833 0.94364 0.93594 1.21481 0.97352 1.44083 0.95197 0.92084 1.25555 0.94381 0.94837 1.01949 1.70028 1.02180 1.44607 1.38319 0.85700 0.77677 0.78910 0.80023 1.20302 1.21183 1.18446 1.18178 0.83944 0.85454 0.77512 1.90671 1.23385 1.77614 1.53944 1.19569 1.00734 0.94909 0.91530 1.22867 0.95423 0.94723 1.01285 1.22998 0.94397 0.93267 0.91991 1.66287 1.15872 1.37738 0.98486 1.18628 1.03517 0.91807 0.86370 1.42780 1.57595 1.15107 1.04289 0.71044 1.20208 0.94972 0.80987 0.85935 1.84802 1.38819 1.87955 1.11945 1.70323 1.25575 1.30415 0.98621 1.19115 1.04442 0.93241 0.92183 0.95135 0.90058 0.92582 0.90951 0.90263 0.95062 0.93827 0.90108 0.93554 0.92716 0.89644 0.90829 0.96791 0.95424 0.92261 0.81502 0.77838 0.69755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.32 127.69 1.19 1.75 16 2 N -0.57 -15.21 5.02 -948.83 -4.76 -19.97 16 3 C 0.03 0.52 9.57 127.69 1.22 1.75 16 4 C 0.07 1.94 4.96 86.30 0.43 2.37 16 5 C -0.11 -4.02 5.46 30.59 0.17 -3.86 16 6 C 0.12 4.71 5.46 86.38 0.47 5.18 16 7 N -0.59 -26.16 2.46 -829.79 -2.04 -28.20 16 8 C 0.25 11.98 4.68 85.63 0.40 12.38 16 9 C -0.54 -26.30 7.06 25.60 0.18 -26.12 16 10 H 0.06 2.97 7.81 -2.91 -0.02 2.94 16 11 C 0.03 1.68 5.46 84.65 0.46 2.14 16 12 N -0.91 -47.54 13.29 21.45 0.28 -47.25 16 13 Si 0.95 38.55 29.54 68.60 2.03 40.57 16 14 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 15 H -0.29 -11.57 7.11 99.48 0.71 -10.87 16 16 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 17 C 0.56 26.17 7.25 86.73 0.63 26.80 16 18 O -0.57 -29.01 16.64 -3.94 -0.07 -29.08 16 19 C -0.05 -2.35 4.80 -19.75 -0.09 -2.44 16 20 C -0.12 -4.70 7.75 22.63 0.18 -4.52 16 21 C 0.14 4.52 11.14 84.68 0.94 5.47 16 22 N -0.47 -15.51 10.35 -192.67 -1.99 -17.51 16 23 C 0.23 7.91 8.46 133.87 1.13 9.05 16 24 N -0.57 -14.06 6.26 -307.03 -1.92 -15.98 16 25 H 0.45 7.15 8.96 -92.71 -0.83 6.32 16 26 C 0.48 13.33 9.39 179.69 1.69 15.02 16 27 O -0.43 -7.84 13.62 -84.62 -1.15 -8.99 16 28 N -0.52 -19.96 11.26 -305.85 -3.44 -23.40 16 29 C 0.03 1.31 6.99 40.03 0.28 1.59 16 30 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 1.70 8.12 -2.38 -0.02 1.68 16 32 H 0.06 1.58 6.47 -2.38 -0.02 1.56 16 33 H 0.07 1.38 8.12 -2.39 -0.02 1.36 16 34 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 35 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.04 1.17 8.12 -2.38 -0.02 1.15 16 37 H 0.08 2.19 8.06 -2.39 -0.02 2.17 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 2.02 6.55 -2.39 -0.02 2.00 16 40 H 0.09 3.16 8.07 -2.39 -0.02 3.14 16 41 H 0.07 2.84 7.36 -2.39 -0.02 2.82 16 42 H 0.01 0.72 8.11 -2.39 -0.02 0.70 16 43 H 0.03 1.41 5.62 -2.39 -0.01 1.40 16 44 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 45 H 0.17 6.87 5.40 -2.91 -0.02 6.86 16 46 H 0.21 5.14 8.06 -2.91 -0.02 5.11 16 47 H 0.44 2.62 9.06 -74.06 -0.67 1.95 16 Total: -1.00 -71.49 392.28 -4.26 -75.75 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -0.47 Total: 27.49 kcal Atomic # 6 Polarization: 37.29 SS G_CDS: 9.28 Total: 46.56 kcal Atomic # 7 Polarization: -138.43 SS G_CDS: -13.88 Total: -152.31 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -1.22 Total: -38.07 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.57 kcal Total: -71.49 -4.26 -75.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361969109.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.108 kcal (2) G-P(sol) polarization free energy of solvation -71.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds