Wall clock time and date at job start Wed Apr 1 2020 06:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42907 * 113.99575 * 2 1 4 4 C 1.53006 * 109.46852 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47126 * 65.00143 * 4 3 2 6 6 C 1.46506 * 119.99785 * 266.20700 * 5 4 3 7 7 C 1.50701 * 109.47136 * 267.42334 * 6 5 4 8 8 H 1.07994 * 119.99818 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99931 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99933 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99799 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46974 * 60.00346 * 11 9 7 13 13 H 1.48500 * 109.46916 * 179.97438 * 11 9 7 14 14 H 1.48490 * 109.47014 * 299.99782 * 11 9 7 15 15 C 1.34770 * 119.99967 * 86.20538 * 5 4 3 16 16 O 1.21578 * 119.99893 * 174.63544 * 15 5 4 17 17 C 1.47709 * 120.00492 * 354.91541 * 15 5 4 18 18 C 1.41497 * 126.52135 * 174.19573 * 17 15 5 19 19 C 1.35366 * 105.50482 * 179.87447 * 18 17 15 20 20 N 1.35040 * 107.22485 * 0.38086 * 19 18 17 21 21 C 1.46497 * 124.87909 * 179.71292 * 20 19 18 22 22 C 1.53002 * 109.47028 * 125.01610 * 21 20 19 23 23 N 1.46497 * 109.47183 * 179.97438 * 22 21 20 24 24 C 1.34949 * 126.03316 * 124.71400 * 23 22 21 25 25 C 1.35320 * 107.74254 * 179.84133 * 24 23 22 26 26 C 1.39868 * 107.92228 * 0.42503 * 25 24 23 27 27 N 1.30840 * 108.20021 * 359.73701 * 26 25 24 28 28 N 1.28461 * 110.22979 * 359.74892 * 20 19 18 29 29 H 1.09002 * 109.46568 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46975 * 299.99972 * 1 2 3 31 31 H 1.09000 * 109.46997 * 60.00268 * 1 2 3 32 32 H 1.08992 * 109.47423 * 60.00420 * 3 2 1 33 33 H 1.08994 * 109.47049 * 299.99753 * 3 2 1 34 34 H 1.08999 * 109.46866 * 304.99971 * 4 3 2 35 35 H 1.08998 * 109.46983 * 184.99958 * 4 3 2 36 36 H 1.09005 * 109.46791 * 27.42177 * 6 5 4 37 37 H 1.08992 * 109.46892 * 147.41959 * 6 5 4 38 38 H 0.96995 * 120.00147 * 179.97438 * 10 9 7 39 39 H 1.07998 * 127.24897 * 0.02562 * 18 17 15 40 40 H 1.08001 * 126.38848 * 180.10437 * 19 18 17 41 41 H 1.09004 * 109.46929 * 245.01328 * 21 20 19 42 42 H 1.08992 * 109.47680 * 5.01200 * 21 20 19 43 43 H 1.08995 * 109.46863 * 299.99746 * 22 21 20 44 44 H 1.09008 * 109.47122 * 59.99681 * 22 21 20 45 45 H 1.07994 * 126.13056 * 0.02562 * 24 23 22 46 46 H 1.08000 * 126.03926 * 180.16154 * 25 24 23 47 47 H 1.08006 * 125.90301 * 179.71492 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.1853 -0.8839 -1.3187 7 6 5.6278 -1.1971 -1.0150 8 1 6.3191 -0.3973 -0.7945 9 6 6.0649 -2.5048 -1.0186 10 7 5.2228 -3.4788 -1.2865 11 14 7.8530 -2.8929 -0.6428 12 1 8.1896 -2.4059 0.7191 13 1 8.0654 -4.3611 -0.7095 14 1 8.7253 -2.2203 -1.6387 15 6 4.1878 1.3265 -2.3440 16 8 4.6459 0.8279 -3.3538 17 6 3.8697 2.7686 -2.3112 18 6 4.1413 3.7141 -3.3282 19 6 3.6732 4.8945 -2.8592 20 7 3.1619 4.6623 -1.6311 21 6 2.5560 5.6807 -0.7697 22 6 1.1457 5.2396 -0.3729 23 7 0.5400 6.2577 0.4890 24 6 -0.6378 6.8806 0.2749 25 6 -0.8400 7.7432 1.2977 26 6 0.2561 7.6510 2.1616 27 7 1.0840 6.7609 1.6778 28 7 3.2839 3.4203 -1.3267 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8514 0.5684 0.8409 35 1 3.9785 2.1766 0.0889 36 1 3.5447 -1.3773 -0.5877 37 1 3.9384 -1.2416 -2.3182 38 1 5.5303 -4.3987 -1.2895 39 1 4.6190 3.5320 -4.2795 40 1 3.7068 5.8455 -3.3699 41 1 3.1632 5.8062 0.1269 42 1 2.5028 6.6270 -1.3078 43 1 0.5386 5.1142 -1.2694 44 1 1.1989 4.2932 0.1653 45 1 -1.3016 6.7176 -0.5612 46 1 -1.6947 8.3916 1.4226 47 1 0.3954 8.2172 3.0708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362122375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:37 Heat of formation + Delta-G solvation = 107.022930 kcal Electronic energy + Delta-G solvation = -30868.276078 eV Core-core repulsion = 26670.529817 eV Total energy + Delta-G solvation = -4197.746261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.66922 -41.51328 -38.75689 -37.35507 -35.53555 -34.75882 -32.75155 -32.30356 -30.73049 -30.51878 -29.43944 -28.70775 -27.07770 -25.90445 -24.91160 -23.26219 -22.56322 -21.57965 -21.56633 -21.29311 -20.71578 -18.73725 -17.90933 -17.17204 -16.59232 -16.32673 -16.26272 -15.83774 -15.43949 -15.41435 -14.99522 -14.78183 -14.62787 -14.23084 -14.05389 -13.98660 -13.65624 -13.42570 -13.26233 -13.16130 -12.82265 -12.71705 -12.20657 -12.10040 -11.98494 -11.69833 -11.53881 -11.14650 -11.06499 -10.85483 -10.78703 -10.52278 -10.29967 -10.02250 -9.89470 -9.52199 -9.36232 -9.15884 -9.10235 -9.02454 -8.92899 -8.28202 -7.52358 -5.89434 -3.92993 1.42294 1.73018 1.83212 2.31763 2.45286 2.53359 3.41874 3.45046 3.48973 3.83358 3.95670 3.98945 4.10368 4.21543 4.37806 4.42403 4.56856 4.61672 4.69119 4.78516 4.94464 5.08192 5.21930 5.30794 5.35466 5.40132 5.44746 5.50597 5.59683 5.67260 5.68143 5.76686 5.82549 5.86621 5.88764 6.07842 6.21184 6.34191 6.50849 6.54962 6.73887 7.26720 7.32485 7.52225 7.63248 7.69989 7.93996 8.08255 8.39350 8.55653 9.02289 9.18714 9.70335 11.18601 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.002760 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.545052 B =10142.833592 C =10946.867822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.376 6.376 3 C 0.057 3.943 4 C 0.118 3.882 5 N -0.574 5.574 6 C 0.252 3.748 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.582 3.418 16 O -0.529 6.529 17 C 0.009 3.991 18 C -0.178 4.178 19 C -0.021 4.021 20 N -0.298 5.298 21 C 0.118 3.882 22 C 0.124 3.876 23 N -0.374 5.374 24 C 0.056 3.944 25 C -0.273 4.273 26 C 0.048 3.952 27 N -0.293 5.293 28 N -0.267 5.267 29 H 0.083 0.917 30 H 0.032 0.968 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.038 0.962 38 H 0.262 0.738 39 H 0.162 0.838 40 H 0.178 0.822 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.174 0.826 46 H 0.149 0.851 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.653 25.102 3.226 29.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.294 6.294 3 C -0.021 4.021 4 C -0.007 4.007 5 N -0.304 5.304 6 C 0.134 3.866 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.202 1.202 15 C 0.366 3.634 16 O -0.404 6.404 17 C -0.152 4.152 18 C -0.206 4.206 19 C -0.163 4.163 20 N -0.086 5.086 21 C -0.004 4.004 22 C 0.001 3.999 23 N -0.157 5.157 24 C -0.089 4.089 25 C -0.303 4.303 26 C -0.139 4.139 27 N -0.114 5.114 28 N -0.102 5.102 29 H 0.101 0.899 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.179 0.821 40 H 0.195 0.805 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.191 0.809 46 H 0.166 0.834 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -13.639 23.643 3.881 27.569 hybrid contribution 0.169 0.715 -0.653 0.983 sum -13.470 24.357 3.228 28.020 Atomic orbital electron populations 1.22652 0.82415 1.02387 0.98806 1.88081 1.18413 1.27808 1.95129 1.23004 0.95343 0.84428 0.99342 1.21615 0.91332 0.99391 0.88338 1.48060 1.63271 1.10404 1.08643 1.19333 0.96389 0.72041 0.98860 1.21429 0.94985 0.92287 1.47433 0.92625 1.24905 0.97641 0.96129 0.95403 1.69934 1.34552 0.99638 1.49301 0.86592 0.85295 0.76977 0.78728 1.20363 1.21288 1.20245 1.16953 0.79460 0.82638 0.84357 1.90778 1.44800 1.72448 1.32378 1.22578 1.03611 0.96354 0.92644 1.21825 1.06203 0.90781 1.01789 1.22787 1.04514 1.01064 0.87923 1.45400 1.43548 1.06389 1.13251 1.22027 0.93739 0.88702 0.95928 1.21911 0.93590 0.90480 0.93884 1.48552 1.16217 1.32271 1.18689 1.22631 0.89652 0.95574 1.01085 1.21555 1.03215 1.07514 0.97967 1.23968 0.92689 0.96910 1.00311 1.77427 1.22617 1.14702 0.96647 1.73807 1.20174 0.90940 1.25266 0.89885 0.94935 0.94916 0.93828 0.93276 0.89678 0.88721 0.93613 0.94375 0.92842 0.82050 0.80503 0.87546 0.87692 0.87860 0.87822 0.80869 0.83376 0.79864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.38 -6.92 9.98 -35.23 -0.35 -7.27 16 3 C 0.06 0.91 5.60 37.16 0.21 1.12 16 4 C 0.12 2.21 5.33 -4.04 -0.02 2.19 16 5 N -0.57 -13.29 2.42 -176.22 -0.43 -13.71 16 6 C 0.25 7.02 4.93 -5.19 -0.03 7.00 16 7 C -0.52 -15.56 9.37 -34.44 -0.32 -15.88 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -27.60 13.29 55.43 0.74 -26.87 16 11 Si 0.90 22.76 29.54 -169.99 -5.02 17.74 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 15 C 0.58 13.30 7.63 -12.39 -0.09 13.21 16 16 O -0.53 -14.12 16.61 5.30 0.09 -14.03 16 17 C 0.01 0.17 6.58 -82.77 -0.54 -0.38 16 18 C -0.18 -2.55 10.81 -39.37 -0.43 -2.97 16 19 C -0.02 -0.21 11.40 -17.16 -0.20 -0.41 16 20 N -0.30 -3.18 3.41 -61.33 -0.21 -3.39 16 21 C 0.12 0.87 6.58 -4.04 -0.03 0.84 16 22 C 0.12 0.89 6.61 -4.04 -0.03 0.86 16 23 N -0.37 -2.97 3.68 -61.37 -0.23 -3.20 16 24 C 0.06 0.35 11.45 -17.22 -0.20 0.15 16 25 C -0.27 -1.74 10.80 -40.01 -0.43 -2.18 16 26 C 0.05 0.36 12.03 -17.36 -0.21 0.15 16 27 N -0.29 -2.84 12.42 30.63 0.38 -2.46 16 28 N -0.27 -3.82 6.65 33.42 0.22 -3.60 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.78 6.66 -51.93 -0.35 0.44 16 34 H 0.08 1.67 8.04 -51.93 -0.42 1.25 16 35 H 0.10 1.63 5.79 -51.93 -0.30 1.33 16 36 H 0.05 1.32 7.53 -51.93 -0.39 0.93 16 37 H 0.04 1.18 7.58 -51.93 -0.39 0.79 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.16 2.22 8.06 -52.49 -0.42 1.79 16 40 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.10 0.52 8.04 -51.93 -0.42 0.11 16 43 H 0.10 0.56 8.07 -51.93 -0.42 0.14 16 44 H 0.10 0.91 8.08 -51.92 -0.42 0.49 16 45 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.18 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 401.82 15.07 6.06 6.06 Total: -1.00 -38.23 401.82 -6.93 -45.16 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.88 Total: -1.43 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -1.30 Total: 7.00 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.48 Total: -53.22 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.26 Total: -21.30 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.23 -6.93 -45.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362122375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.179 kcal (2) G-P(sol) polarization free energy of solvation -38.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds