Wall clock time and date at job start Wed Apr 1 2020 06:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42907 * 113.99575 * 2 1 4 4 C 1.53006 * 109.46852 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47126 * 65.00143 * 4 3 2 6 6 C 1.46506 * 119.99785 * 266.20700 * 5 4 3 7 7 C 1.50701 * 109.47136 * 267.42334 * 6 5 4 8 8 H 1.07994 * 119.99818 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99931 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99933 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99799 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46974 * 60.00346 * 11 9 7 13 13 H 1.48500 * 109.46916 * 179.97438 * 11 9 7 14 14 H 1.48490 * 109.47014 * 299.99782 * 11 9 7 15 15 C 1.34770 * 119.99967 * 86.20538 * 5 4 3 16 16 O 1.21578 * 119.99893 * 174.63544 * 15 5 4 17 17 C 1.47709 * 120.00492 * 354.91541 * 15 5 4 18 18 C 1.41497 * 126.52135 * 174.19573 * 17 15 5 19 19 C 1.35366 * 105.50482 * 179.87447 * 18 17 15 20 20 N 1.35040 * 107.22485 * 0.38086 * 19 18 17 21 21 C 1.46497 * 124.87909 * 179.71292 * 20 19 18 22 22 C 1.53002 * 109.47028 * 125.01610 * 21 20 19 23 23 N 1.46497 * 109.47183 * 179.97438 * 22 21 20 24 24 C 1.34949 * 126.03316 * 124.71400 * 23 22 21 25 25 C 1.35320 * 107.74254 * 179.84133 * 24 23 22 26 26 C 1.39868 * 107.92228 * 0.42503 * 25 24 23 27 27 N 1.30840 * 108.20021 * 359.73701 * 26 25 24 28 28 N 1.28461 * 110.22979 * 359.74892 * 20 19 18 29 29 H 1.09002 * 109.46568 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46975 * 299.99972 * 1 2 3 31 31 H 1.09000 * 109.46997 * 60.00268 * 1 2 3 32 32 H 1.08992 * 109.47423 * 60.00420 * 3 2 1 33 33 H 1.08994 * 109.47049 * 299.99753 * 3 2 1 34 34 H 1.08999 * 109.46866 * 304.99971 * 4 3 2 35 35 H 1.08998 * 109.46983 * 184.99958 * 4 3 2 36 36 H 1.09005 * 109.46791 * 27.42177 * 6 5 4 37 37 H 1.08992 * 109.46892 * 147.41959 * 6 5 4 38 38 H 0.96995 * 120.00147 * 179.97438 * 10 9 7 39 39 H 1.07998 * 127.24897 * 0.02562 * 18 17 15 40 40 H 1.08001 * 126.38848 * 180.10437 * 19 18 17 41 41 H 1.09004 * 109.46929 * 245.01328 * 21 20 19 42 42 H 1.08992 * 109.47680 * 5.01200 * 21 20 19 43 43 H 1.08995 * 109.46863 * 299.99746 * 22 21 20 44 44 H 1.09008 * 109.47122 * 59.99681 * 22 21 20 45 45 H 1.07994 * 126.13056 * 0.02562 * 24 23 22 46 46 H 1.08000 * 126.03926 * 180.16154 * 25 24 23 47 47 H 1.08006 * 125.90301 * 179.71492 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.1853 -0.8839 -1.3187 7 6 5.6278 -1.1971 -1.0150 8 1 6.3191 -0.3973 -0.7945 9 6 6.0649 -2.5048 -1.0186 10 7 5.2228 -3.4788 -1.2865 11 14 7.8530 -2.8929 -0.6428 12 1 8.1896 -2.4059 0.7191 13 1 8.0654 -4.3611 -0.7095 14 1 8.7253 -2.2203 -1.6387 15 6 4.1878 1.3265 -2.3440 16 8 4.6459 0.8279 -3.3538 17 6 3.8697 2.7686 -2.3112 18 6 4.1413 3.7141 -3.3282 19 6 3.6732 4.8945 -2.8592 20 7 3.1619 4.6623 -1.6311 21 6 2.5560 5.6807 -0.7697 22 6 1.1457 5.2396 -0.3729 23 7 0.5400 6.2577 0.4890 24 6 -0.6378 6.8806 0.2749 25 6 -0.8400 7.7432 1.2977 26 6 0.2561 7.6510 2.1616 27 7 1.0840 6.7609 1.6778 28 7 3.2839 3.4203 -1.3267 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8514 0.5684 0.8409 35 1 3.9785 2.1766 0.0889 36 1 3.5447 -1.3773 -0.5877 37 1 3.9384 -1.2416 -2.3182 38 1 5.5303 -4.3987 -1.2895 39 1 4.6190 3.5320 -4.2795 40 1 3.7068 5.8455 -3.3699 41 1 3.1632 5.8062 0.1269 42 1 2.5028 6.6270 -1.3078 43 1 0.5386 5.1142 -1.2694 44 1 1.1989 4.2932 0.1653 45 1 -1.3016 6.7176 -0.5612 46 1 -1.6947 8.3916 1.4226 47 1 0.3954 8.2172 3.0708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362122375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:36 Heat of formation + Delta-G solvation = 80.085934 kcal Electronic energy + Delta-G solvation = -30869.444153 eV Core-core repulsion = 26670.529817 eV Total energy + Delta-G solvation = -4198.914337 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.71085 -42.00345 -40.48164 -38.76811 -36.58674 -36.22894 -34.81744 -33.25526 -31.86022 -31.10489 -30.94634 -29.69454 -28.77992 -27.14238 -26.14182 -24.72581 -24.11450 -22.86326 -22.31085 -21.93616 -21.40852 -20.15063 -18.75215 -18.59251 -18.13594 -17.78157 -17.30040 -17.06850 -16.94633 -16.59922 -16.23116 -16.13599 -15.80525 -15.41769 -15.21446 -14.87028 -14.70968 -14.64379 -14.25267 -14.12844 -13.91792 -13.72027 -13.64576 -13.39616 -13.27390 -13.09483 -12.93655 -12.76258 -12.60247 -12.56301 -12.19745 -11.99782 -11.75134 -11.63499 -11.57319 -10.94151 -10.63419 -10.58118 -10.45978 -10.16763 -10.05971 -9.52249 -9.43314 -8.19020 -6.33893 0.55275 0.95436 1.14906 1.23248 1.35694 1.41054 1.48432 1.82073 1.99211 2.27232 2.45034 2.49028 2.96391 3.09503 3.19130 3.42126 3.60788 3.89879 3.97354 4.06768 4.09366 4.15305 4.19332 4.30682 4.39316 4.43869 4.48953 4.52781 4.59271 4.63973 4.76312 4.77383 4.78146 4.80865 4.92689 4.93346 5.12143 5.19258 5.24279 5.37209 5.57809 5.73507 5.83864 5.88879 6.08962 6.09655 6.32024 6.66675 6.75576 6.77092 6.89902 7.27210 7.42960 8.88191 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.002760 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.545052 B =10142.833592 C =10946.867822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.419 6.419 3 C 0.069 3.931 4 C 0.118 3.882 5 N -0.582 5.582 6 C 0.275 3.725 7 C -0.544 4.544 8 H 0.048 0.952 9 C 0.007 3.993 10 N -0.927 5.927 11 Si 0.969 3.031 12 H -0.262 1.262 13 H -0.274 1.274 14 H -0.277 1.277 15 C 0.575 3.425 16 O -0.586 6.586 17 C -0.029 4.029 18 C -0.203 4.203 19 C 0.018 3.982 20 N -0.280 5.280 21 C 0.118 3.882 22 C 0.126 3.874 23 N -0.381 5.381 24 C 0.058 3.942 25 C -0.283 4.283 26 C 0.040 3.960 27 N -0.337 5.337 28 N -0.265 5.265 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.028 0.972 37 H -0.008 1.008 38 H 0.267 0.733 39 H 0.158 0.842 40 H 0.233 0.767 41 H 0.099 0.901 42 H 0.142 0.858 43 H 0.126 0.874 44 H 0.084 0.916 45 H 0.205 0.795 46 H 0.167 0.833 47 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.600 28.721 3.898 32.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.339 6.339 3 C -0.009 4.009 4 C -0.005 4.005 5 N -0.311 5.311 6 C 0.154 3.846 7 C -0.582 4.582 8 H 0.067 0.933 9 C -0.191 4.191 10 N -0.567 5.567 11 Si 0.793 3.207 12 H -0.187 1.187 13 H -0.199 1.199 14 H -0.202 1.202 15 C 0.362 3.638 16 O -0.465 6.465 17 C -0.188 4.188 18 C -0.231 4.231 19 C -0.125 4.125 20 N -0.068 5.068 21 C -0.003 4.003 22 C 0.004 3.996 23 N -0.164 5.164 24 C -0.088 4.088 25 C -0.312 4.312 26 C -0.146 4.146 27 N -0.158 5.158 28 N -0.102 5.102 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.046 0.954 37 H 0.010 0.990 38 H 0.076 0.924 39 H 0.175 0.825 40 H 0.250 0.750 41 H 0.117 0.883 42 H 0.160 0.840 43 H 0.144 0.856 44 H 0.103 0.897 45 H 0.222 0.778 46 H 0.185 0.815 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -14.623 27.298 4.602 31.308 hybrid contribution 0.315 -0.256 -0.815 0.910 sum -14.308 27.042 3.787 30.827 Atomic orbital electron populations 1.22838 0.80036 1.03201 1.00538 1.88023 1.21204 1.29207 1.95478 1.22883 0.93050 0.84017 1.00916 1.21806 0.93702 0.99321 0.85701 1.48004 1.63744 1.08762 1.10638 1.18684 0.95332 0.75225 0.95341 1.21664 0.95749 0.92666 1.48163 0.93332 1.25870 1.02730 0.95770 0.94775 1.70062 1.36861 1.00142 1.49587 0.85456 0.78911 0.77306 0.79048 1.18690 1.19919 1.20207 1.17645 0.78078 0.84922 0.83119 1.90714 1.47317 1.74328 1.34141 1.21784 1.07578 0.93899 0.95541 1.21964 1.07832 0.91701 1.01583 1.23411 1.00844 1.01459 0.86768 1.45746 1.41735 1.05603 1.13759 1.22323 0.93503 0.88763 0.95674 1.21870 0.93819 0.89605 0.94356 1.48582 1.16797 1.32584 1.18452 1.23212 0.89184 0.94608 1.01748 1.21892 1.03508 1.07968 0.97800 1.24427 0.92776 0.96402 1.00992 1.77378 1.24229 1.16185 0.98034 1.73661 1.19610 0.92556 1.24344 0.89706 0.92301 0.93894 0.90593 0.92933 0.91277 0.87008 0.95385 0.99006 0.92386 0.82470 0.75024 0.88304 0.83997 0.85647 0.89746 0.77788 0.81512 0.78151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.42 -15.81 9.98 -148.98 -1.49 -17.30 16 3 C 0.07 2.21 5.60 71.98 0.40 2.61 16 4 C 0.12 4.57 5.33 86.38 0.46 5.03 16 5 N -0.58 -28.71 2.42 -829.69 -2.00 -30.71 16 6 C 0.28 16.48 4.93 85.63 0.42 16.90 16 7 C -0.54 -34.10 9.37 25.60 0.24 -33.86 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.01 0.45 5.46 84.66 0.46 0.92 16 10 N -0.93 -59.30 13.29 21.45 0.28 -59.01 16 11 Si 0.97 47.70 29.54 68.60 2.03 49.73 16 12 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 13 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 14 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 15 C 0.57 27.94 7.63 86.75 0.66 28.61 16 16 O -0.59 -33.74 16.61 -3.96 -0.07 -33.81 16 17 C -0.03 -1.05 6.58 42.45 0.28 -0.77 16 18 C -0.20 -5.60 10.81 22.41 0.24 -5.36 16 19 C 0.02 0.29 11.40 83.54 0.95 1.24 16 20 N -0.28 -5.03 3.41 -347.95 -1.19 -6.21 16 21 C 0.12 1.26 6.58 86.38 0.57 1.83 16 22 C 0.13 1.38 6.61 86.38 0.57 1.95 16 23 N -0.38 -4.90 3.68 -348.06 -1.28 -6.18 16 24 C 0.06 0.51 11.45 83.54 0.96 1.47 16 25 C -0.28 -2.78 10.80 21.99 0.24 -2.54 16 26 C 0.04 0.52 12.03 85.24 1.02 1.54 16 27 N -0.34 -5.86 12.42 -57.02 -0.71 -6.57 16 28 N -0.26 -7.22 6.65 -48.18 -0.32 -7.54 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.05 1.66 6.66 -2.39 -0.02 1.64 16 34 H 0.07 2.85 8.04 -2.39 -0.02 2.83 16 35 H 0.11 3.90 5.79 -2.39 -0.01 3.88 16 36 H 0.03 1.75 7.53 -2.38 -0.02 1.73 16 37 H -0.01 -0.55 7.58 -2.39 -0.02 -0.57 16 38 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 39 H 0.16 4.36 8.06 -2.91 -0.02 4.34 16 40 H 0.23 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.14 0.59 8.04 -2.39 -0.02 0.57 16 43 H 0.13 0.82 8.07 -2.39 -0.02 0.80 16 44 H 0.08 1.28 8.08 -2.38 -0.02 1.26 16 45 H 0.21 0.34 8.06 -2.91 -0.02 0.31 16 46 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 47 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -91.24 401.82 4.96 -86.28 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.97 Total: 9.68 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 8.73 Total: 21.63 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -5.21 Total: -116.22 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -1.55 Total: -51.11 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -91.24 4.96 -86.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362122375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.370 kcal (2) G-P(sol) polarization free energy of solvation -91.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds