Wall clock time and date at job start Wed Apr 1 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 111.00333 * 2 1 4 4 C 1.50701 * 109.47064 * 293.95454 * 3 2 1 5 5 O 1.21279 * 119.99785 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00165 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00143 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47037 * 90.00490 * 7 6 4 9 9 H 1.08000 * 120.00229 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00217 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00075 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99939 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46974 * 89.99859 * 12 10 8 14 14 H 1.48500 * 109.47163 * 209.99994 * 12 10 8 15 15 H 1.48501 * 109.47219 * 330.00370 * 12 10 8 16 16 C 1.46503 * 119.99935 * 0.02562 * 6 4 3 17 17 C 1.52996 * 109.47584 * 89.99768 * 16 6 4 18 18 C 1.47200 * 109.47133 * 180.02562 * 17 16 6 19 19 N 6.68953 * 128.53926 * 11.84679 * 2 1 3 20 20 C 1.46903 * 110.99975 * 123.95515 * 2 1 3 21 21 C 1.50706 * 109.47373 * 66.04428 * 20 2 1 22 22 N 1.29946 * 126.28876 * 270.03133 * 21 20 2 23 23 O 1.21297 * 110.25321 * 179.68528 * 22 21 20 24 24 C 1.33646 * 109.80764 * 0.46050 * 23 22 21 25 25 C 1.50706 * 126.54918 * 179.80385 * 24 23 22 26 26 C 1.53002 * 117.49668 * 59.69212 * 25 24 23 27 27 C 1.53000 * 60.02940 * 252.51929 * 26 25 24 28 28 N 1.31125 * 106.90001 * 359.54417 * 24 23 22 29 29 H 1.08997 * 109.46550 * 296.04444 * 1 2 3 30 30 H 1.08992 * 109.46875 * 56.04732 * 1 2 3 31 31 H 1.09005 * 109.46827 * 176.04441 * 1 2 3 32 32 H 1.08999 * 109.47022 * 53.95144 * 3 2 1 33 33 H 1.09002 * 109.47324 * 173.95461 * 3 2 1 34 34 H 1.09002 * 109.47210 * 210.00286 * 7 6 4 35 35 H 1.09000 * 109.46990 * 329.99944 * 7 6 4 36 36 H 0.97008 * 119.99656 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.46842 * 210.00246 * 16 6 4 38 38 H 1.09004 * 109.46697 * 329.99139 * 16 6 4 39 39 H 1.09009 * 109.47032 * 300.00081 * 17 16 6 40 40 H 1.08997 * 109.47469 * 59.99534 * 17 16 6 41 41 H 1.09002 * 109.47135 * 306.04586 * 20 2 1 42 42 H 1.09003 * 109.47221 * 186.04344 * 20 2 1 43 43 H 1.09000 * 115.55924 * 205.37617 * 25 24 23 44 44 H 1.09002 * 117.49918 * 145.01964 * 26 25 24 45 45 H 1.09002 * 117.49754 * 0.02562 * 26 25 24 46 46 H 1.09008 * 117.49673 * 107.47884 * 27 26 25 47 47 H 1.08999 * 117.49942 * 252.47315 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0055 1.4453 -2.1410 6 7 2.0181 3.3201 -1.5233 7 6 1.6701 3.9768 -2.7858 8 6 0.3381 4.6668 -2.6426 9 1 -0.1960 4.6205 -1.7050 10 6 -0.1992 5.3565 -3.7087 11 7 -1.3619 5.9583 -3.5838 12 14 0.7242 5.4360 -5.3305 13 1 0.3200 4.2921 -6.1869 14 1 0.4016 6.7101 -6.0219 15 1 2.1850 5.3690 -5.0723 16 6 2.7814 4.0468 -0.5057 17 6 4.2778 3.8279 -0.7374 18 6 5.0446 4.5576 0.2854 19 7 5.6369 5.1210 1.0742 20 6 1.9955 -0.7660 1.1376 21 6 1.6369 -2.2205 0.9729 22 7 0.5601 -2.8015 1.4104 23 8 0.5658 -3.9769 1.1108 24 6 1.6854 -4.2682 0.4418 25 6 2.0799 -5.6167 -0.1035 26 6 1.1453 -6.2661 -1.1260 27 6 1.2229 -6.8197 0.2982 28 7 2.3725 -3.1556 0.3455 29 1 -0.3632 0.4512 0.9233 30 1 -0.3633 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 1.5612 1.9273 0.8309 33 1 3.0798 1.3443 0.1082 34 1 2.4351 4.7119 -3.0360 35 1 1.6097 3.2311 -3.5786 36 1 -1.7397 6.4438 -4.3338 37 1 2.5552 5.1110 -0.5730 38 1 2.5093 3.6794 0.4838 39 1 4.5040 2.7636 -0.6701 40 1 4.5499 4.1952 -1.7269 41 1 1.5611 -0.3873 2.0628 42 1 3.0798 -0.6612 1.1756 43 1 3.1507 -5.7796 -0.2257 44 1 1.6012 -6.8564 -1.9210 45 1 0.2453 -5.7179 -1.4046 46 1 0.3741 -6.6353 0.9568 47 1 1.7295 -7.7743 0.4403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365309192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:50 Heat of formation + Delta-G solvation = 113.723127 kcal Electronic energy + Delta-G solvation = -29874.048022 eV Core-core repulsion = 25676.592303 eV Total energy + Delta-G solvation = -4197.455719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.76886 -39.68727 -37.93181 -37.52073 -36.85214 -35.65307 -35.18458 -32.84894 -32.32789 -31.04184 -29.38535 -28.21431 -27.22045 -25.27058 -24.38738 -24.03019 -22.99917 -22.84789 -21.74237 -20.56868 -18.60500 -18.31069 -17.80178 -17.64760 -16.89286 -16.77760 -16.70625 -15.98581 -15.62013 -15.14494 -15.07723 -14.69189 -14.52178 -14.35819 -13.88842 -13.58339 -13.38570 -13.17500 -12.89464 -12.59330 -12.52855 -12.49670 -12.31459 -12.23068 -12.12381 -12.05857 -12.01884 -11.69362 -11.52800 -11.51035 -11.27985 -11.16931 -11.10806 -11.08043 -10.82483 -10.57427 -10.22221 -9.90885 -9.61343 -9.17343 -8.63675 -8.38266 -7.91948 -6.13369 -4.13054 0.90450 1.96618 2.50259 2.65674 2.74453 3.09715 3.19782 3.25649 3.30501 3.33158 3.37025 3.48345 3.74571 3.97740 4.17997 4.21156 4.32693 4.35177 4.41622 4.81597 4.83570 4.91674 5.00899 5.05471 5.10686 5.13341 5.20159 5.20509 5.28826 5.30849 5.43007 5.46025 5.54376 5.55881 5.62911 5.64383 5.71809 5.83138 5.98951 6.29293 6.54297 6.76708 6.85954 6.90816 7.18854 7.50503 7.54466 8.00604 8.06431 8.40295 8.83696 8.90702 9.46278 10.99808 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.002513 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.085541 B =11137.296480 C =12768.177892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.517 5.517 3 C 0.036 3.964 4 C 0.513 3.487 5 O -0.512 6.512 6 N -0.594 5.594 7 C 0.216 3.784 8 C -0.531 4.531 9 H 0.074 0.926 10 C 0.073 3.927 11 N -0.896 5.896 12 Si 0.875 3.125 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.265 1.265 16 C 0.117 3.883 17 C -0.051 4.051 18 C 0.216 3.784 19 N -0.443 5.443 20 C 0.144 3.856 21 C 0.189 3.811 22 N -0.379 5.379 23 O 0.076 5.924 24 C 0.204 3.796 25 C -0.079 4.079 26 C -0.152 4.152 27 C -0.160 4.160 28 N -0.462 5.462 29 H 0.025 0.975 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.032 0.968 35 H 0.040 0.960 36 H 0.265 0.735 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.150 0.850 44 H 0.114 0.886 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.339 -21.774 9.116 25.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.242 5.242 3 C -0.095 4.095 4 C 0.298 3.702 5 O -0.386 6.386 6 N -0.326 5.326 7 C 0.096 3.904 8 C -0.569 4.569 9 H 0.093 0.907 10 C -0.130 4.130 11 N -0.534 5.534 12 Si 0.702 3.298 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.189 1.189 16 C -0.010 4.010 17 C -0.093 4.093 18 C -0.102 4.102 19 N -0.120 5.120 20 C 0.014 3.986 21 C -0.084 4.084 22 N -0.087 5.087 23 O 0.017 5.983 24 C -0.016 4.016 25 C -0.099 4.099 26 C -0.191 4.191 27 C -0.197 4.197 28 N -0.194 5.194 29 H 0.044 0.956 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.083 0.917 42 H 0.125 0.875 43 H 0.167 0.833 44 H 0.132 0.868 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.608 -20.644 9.620 24.720 hybrid contribution -0.129 0.317 -0.479 0.589 sum 9.479 -20.327 9.141 24.220 Atomic orbital electron populations 1.22633 0.85549 1.02641 1.02174 1.61520 1.09645 1.12484 1.40551 1.22110 1.01580 0.88736 0.97106 1.20070 0.80221 0.81577 0.88294 1.90675 1.38176 1.63585 1.46165 1.47877 1.53640 1.11901 1.19180 1.19716 0.96655 0.92788 0.81270 1.21292 1.03096 1.31992 1.00568 0.90746 1.24859 0.94728 0.94871 0.98515 1.69894 1.17400 1.34182 1.31927 0.86867 0.80648 0.77842 0.84407 1.19899 1.21149 1.18950 1.21339 0.87216 1.00153 0.92260 1.19911 0.94512 0.99853 0.95026 1.29061 0.93621 0.93549 0.94004 1.81219 1.09951 1.09799 1.11032 1.20313 1.01857 0.83115 0.93298 1.25546 0.87894 0.99272 0.95733 1.74670 1.21705 0.90809 1.21503 1.85257 1.38430 1.20822 1.53804 1.27654 0.83322 0.97022 0.93586 1.20309 0.99838 0.83804 1.05910 1.23186 1.00721 1.02027 0.93141 1.23187 1.01753 0.96243 0.98559 1.71847 1.29703 0.98100 1.19800 0.95624 0.88159 0.92083 0.91604 0.87985 0.94970 0.94209 0.92516 0.88451 0.90443 0.87403 0.86578 0.91739 0.87456 0.83286 0.86753 0.87757 0.87480 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.01 60.07 0.54 0.82 16 2 N -0.52 -7.36 4.49 -245.82 -1.10 -8.46 16 3 C 0.04 0.45 4.00 -4.98 -0.02 0.43 16 4 C 0.51 9.08 7.36 -10.99 -0.08 9.00 16 5 O -0.51 -11.50 13.91 5.56 0.08 -11.42 16 6 N -0.59 -10.24 2.46 -175.06 -0.43 -10.67 16 7 C 0.22 4.69 4.23 -5.20 -0.02 4.67 16 8 C -0.53 -14.22 9.94 -34.44 -0.34 -14.56 16 9 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 10 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 11 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 12 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 16 C 0.12 1.44 5.17 -4.04 -0.02 1.41 16 17 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16 18 C 0.22 2.41 15.43 -20.76 -0.32 2.09 16 19 N -0.44 -6.20 18.54 42.15 0.78 -5.42 16 20 C 0.14 1.66 5.59 -4.97 -0.03 1.63 16 21 C 0.19 2.50 6.84 -156.37 -1.07 1.43 16 22 N -0.38 -5.11 11.44 30.90 0.35 -4.75 16 23 O 0.08 0.89 11.08 18.09 0.20 1.09 16 24 C 0.20 2.17 7.97 -13.06 -0.10 2.07 16 25 C -0.08 -0.51 6.33 -91.73 -0.58 -1.09 16 26 C -0.15 -0.77 10.23 -26.73 -0.27 -1.04 16 27 C -0.16 -0.67 10.18 -26.70 -0.27 -0.94 16 28 N -0.46 -6.03 11.55 -9.87 -0.11 -6.14 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 1.89 5.82 -51.93 -0.30 1.58 16 31 H 0.06 0.97 6.74 -51.93 -0.35 0.62 16 32 H 0.07 0.74 7.38 -51.93 -0.38 0.36 16 33 H 0.10 0.96 6.98 -51.93 -0.36 0.60 16 34 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 35 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.10 1.30 8.07 -51.93 -0.42 0.89 16 38 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 39 H 0.11 0.78 7.22 -51.92 -0.38 0.40 16 40 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 42 H 0.11 1.02 7.93 -51.93 -0.41 0.60 16 43 H 0.15 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.11 0.48 8.01 -51.92 -0.42 0.07 16 47 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 401.35 15.07 6.05 6.05 Total: -1.00 -36.38 401.35 -7.58 -43.96 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.63 Total: -1.38 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -2.87 Total: 7.21 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: 0.26 Total: -61.44 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.28 Total: -10.33 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.38 -7.58 -43.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365309192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.680 kcal (2) G-P(sol) polarization free energy of solvation -36.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds