Wall clock time and date at job start Wed Apr 1 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 111.00333 * 2 1 4 4 C 1.50701 * 109.47064 * 293.95454 * 3 2 1 5 5 O 1.21279 * 119.99785 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00165 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00143 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47037 * 90.00490 * 7 6 4 9 9 H 1.08000 * 120.00229 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00217 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00075 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99939 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46974 * 89.99859 * 12 10 8 14 14 H 1.48500 * 109.47163 * 209.99994 * 12 10 8 15 15 H 1.48501 * 109.47219 * 330.00370 * 12 10 8 16 16 C 1.46503 * 119.99935 * 0.02562 * 6 4 3 17 17 C 1.52996 * 109.47584 * 89.99768 * 16 6 4 18 18 C 1.47200 * 109.47133 * 180.02562 * 17 16 6 19 19 N 6.68953 * 128.53926 * 11.84679 * 2 1 3 20 20 C 1.46903 * 110.99975 * 123.95515 * 2 1 3 21 21 C 1.50706 * 109.47373 * 66.04428 * 20 2 1 22 22 N 1.29946 * 126.28876 * 270.03133 * 21 20 2 23 23 O 1.21297 * 110.25321 * 179.68528 * 22 21 20 24 24 C 1.33646 * 109.80764 * 0.46050 * 23 22 21 25 25 C 1.50706 * 126.54918 * 179.80385 * 24 23 22 26 26 C 1.53002 * 117.49668 * 59.69212 * 25 24 23 27 27 C 1.53000 * 60.02940 * 252.51929 * 26 25 24 28 28 N 1.31125 * 106.90001 * 359.54417 * 24 23 22 29 29 H 1.08997 * 109.46550 * 296.04444 * 1 2 3 30 30 H 1.08992 * 109.46875 * 56.04732 * 1 2 3 31 31 H 1.09005 * 109.46827 * 176.04441 * 1 2 3 32 32 H 1.08999 * 109.47022 * 53.95144 * 3 2 1 33 33 H 1.09002 * 109.47324 * 173.95461 * 3 2 1 34 34 H 1.09002 * 109.47210 * 210.00286 * 7 6 4 35 35 H 1.09000 * 109.46990 * 329.99944 * 7 6 4 36 36 H 0.97008 * 119.99656 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.46842 * 210.00246 * 16 6 4 38 38 H 1.09004 * 109.46697 * 329.99139 * 16 6 4 39 39 H 1.09009 * 109.47032 * 300.00081 * 17 16 6 40 40 H 1.08997 * 109.47469 * 59.99534 * 17 16 6 41 41 H 1.09002 * 109.47135 * 306.04586 * 20 2 1 42 42 H 1.09003 * 109.47221 * 186.04344 * 20 2 1 43 43 H 1.09000 * 115.55924 * 205.37617 * 25 24 23 44 44 H 1.09002 * 117.49918 * 145.01964 * 26 25 24 45 45 H 1.09002 * 117.49754 * 0.02562 * 26 25 24 46 46 H 1.09008 * 117.49673 * 107.47884 * 27 26 25 47 47 H 1.08999 * 117.49942 * 252.47315 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0055 1.4453 -2.1410 6 7 2.0181 3.3201 -1.5233 7 6 1.6701 3.9768 -2.7858 8 6 0.3381 4.6668 -2.6426 9 1 -0.1960 4.6205 -1.7050 10 6 -0.1992 5.3565 -3.7087 11 7 -1.3619 5.9583 -3.5838 12 14 0.7242 5.4360 -5.3305 13 1 0.3200 4.2921 -6.1869 14 1 0.4016 6.7101 -6.0219 15 1 2.1850 5.3690 -5.0723 16 6 2.7814 4.0468 -0.5057 17 6 4.2778 3.8279 -0.7374 18 6 5.0446 4.5576 0.2854 19 7 5.6369 5.1210 1.0742 20 6 1.9955 -0.7660 1.1376 21 6 1.6369 -2.2205 0.9729 22 7 0.5601 -2.8015 1.4104 23 8 0.5658 -3.9769 1.1108 24 6 1.6854 -4.2682 0.4418 25 6 2.0799 -5.6167 -0.1035 26 6 1.1453 -6.2661 -1.1260 27 6 1.2229 -6.8197 0.2982 28 7 2.3725 -3.1556 0.3455 29 1 -0.3632 0.4512 0.9233 30 1 -0.3633 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 1.5612 1.9273 0.8309 33 1 3.0798 1.3443 0.1082 34 1 2.4351 4.7119 -3.0360 35 1 1.6097 3.2311 -3.5786 36 1 -1.7397 6.4438 -4.3338 37 1 2.5552 5.1110 -0.5730 38 1 2.5093 3.6794 0.4838 39 1 4.5040 2.7636 -0.6701 40 1 4.5499 4.1952 -1.7269 41 1 1.5611 -0.3873 2.0628 42 1 3.0798 -0.6612 1.1756 43 1 3.1507 -5.7796 -0.2257 44 1 1.6012 -6.8564 -1.9210 45 1 0.2453 -5.7179 -1.4046 46 1 0.3741 -6.6353 0.9568 47 1 1.7295 -7.7743 0.4403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365309192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:49 Heat of formation + Delta-G solvation = 86.193294 kcal Electronic energy + Delta-G solvation = -29875.241805 eV Core-core repulsion = 25676.592303 eV Total energy + Delta-G solvation = -4198.649502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.66645 -41.00048 -38.62351 -38.35186 -37.88690 -36.75246 -36.36554 -34.79630 -33.23221 -32.31899 -30.70479 -29.32890 -28.67203 -25.98262 -25.51044 -25.19894 -24.17721 -23.28482 -23.05161 -21.35357 -19.90901 -19.24191 -19.15225 -18.56073 -18.40924 -17.99660 -17.33216 -17.23812 -16.73120 -16.27956 -16.02292 -15.84037 -15.67252 -15.37100 -15.32127 -14.62929 -14.56396 -14.23751 -14.06373 -13.95341 -13.71369 -13.52675 -13.38662 -13.24282 -13.21756 -13.01399 -12.93445 -12.79200 -12.61488 -12.57509 -12.42808 -12.36948 -12.11451 -12.01129 -11.95366 -11.80292 -11.68136 -11.51338 -10.76971 -10.66880 -10.59465 -9.47157 -9.40401 -8.27716 -6.31852 0.06392 1.06134 1.38460 1.42876 1.49869 1.71499 1.76685 1.88023 1.88907 2.19268 2.36627 2.49041 2.79158 2.92301 3.06557 3.09502 3.20250 3.70065 3.73690 3.76159 3.94642 4.02342 4.11161 4.13838 4.18321 4.28401 4.32854 4.37362 4.47080 4.55166 4.64993 4.67930 4.78822 4.84686 4.90319 4.91905 4.97233 5.01277 5.03368 5.10179 5.13982 5.22263 5.53822 5.64015 5.72427 5.82309 6.30357 6.64884 6.71055 6.73597 7.12564 7.29109 7.50828 8.89128 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.002513 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.085541 B =11137.296480 C =12768.177892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.534 5.534 3 C 0.044 3.956 4 C 0.505 3.495 5 O -0.570 6.570 6 N -0.595 5.595 7 C 0.224 3.776 8 C -0.530 4.530 9 H 0.029 0.971 10 C 0.007 3.993 11 N -0.950 5.950 12 Si 0.943 3.057 13 H -0.281 1.281 14 H -0.284 1.284 15 H -0.226 1.226 16 C 0.111 3.889 17 C -0.038 4.038 18 C 0.246 3.754 19 N -0.493 5.493 20 C 0.145 3.855 21 C 0.178 3.822 22 N -0.402 5.402 23 O 0.070 5.930 24 C 0.212 3.788 25 C -0.097 4.097 26 C -0.152 4.152 27 C -0.141 4.141 28 N -0.490 5.490 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.061 0.939 35 H 0.023 0.977 36 H 0.265 0.735 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.141 0.859 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.135 0.865 43 H 0.166 0.834 44 H 0.136 0.864 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.599 -23.441 9.478 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.260 5.260 3 C -0.086 4.086 4 C 0.293 3.707 5 O -0.448 6.448 6 N -0.326 5.326 7 C 0.101 3.899 8 C -0.568 4.568 9 H 0.047 0.953 10 C -0.190 4.190 11 N -0.591 5.591 12 Si 0.767 3.233 13 H -0.207 1.207 14 H -0.210 1.210 15 H -0.148 1.148 16 C -0.014 4.014 17 C -0.079 4.079 18 C -0.071 4.071 19 N -0.171 5.171 20 C 0.017 3.983 21 C -0.096 4.096 22 N -0.112 5.112 23 O 0.013 5.987 24 C -0.007 4.007 25 C -0.117 4.117 26 C -0.190 4.190 27 C -0.178 4.178 28 N -0.223 5.223 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.166 0.834 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.159 0.841 40 H 0.146 0.854 41 H 0.099 0.901 42 H 0.153 0.847 43 H 0.184 0.816 44 H 0.154 0.846 45 H 0.107 0.893 46 H 0.120 0.880 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.924 -22.315 10.036 27.671 hybrid contribution -1.245 0.745 -0.537 1.547 sum 11.679 -21.570 9.498 26.304 Atomic orbital electron populations 1.22355 0.87216 1.01280 1.00918 1.61398 1.08399 1.13644 1.42555 1.22167 1.04322 0.87752 0.94320 1.21005 0.78881 0.81391 0.89401 1.90658 1.40648 1.65049 1.48446 1.47829 1.53952 1.12084 1.18766 1.19381 0.94596 0.92553 0.83339 1.21615 1.04990 1.31608 0.98623 0.95292 1.25858 0.95651 0.94652 1.02868 1.70067 1.19731 1.36014 1.33268 0.85780 0.81417 0.77294 0.78851 1.20657 1.20990 1.14820 1.21562 0.88721 0.99016 0.92081 1.19875 0.91564 1.01630 0.94824 1.29185 0.92565 0.92274 0.93102 1.81270 1.11625 1.11483 1.12693 1.20476 1.03367 0.81766 0.92706 1.25938 0.87860 1.00151 0.95638 1.74641 1.22366 0.91518 1.22655 1.85216 1.38994 1.20378 1.54154 1.28473 0.82246 0.98027 0.92003 1.20671 1.01090 0.82580 1.07379 1.23288 0.99736 1.01759 0.94237 1.23320 1.00837 0.96161 0.97493 1.71843 1.30624 0.98858 1.20988 0.94471 0.92044 0.93110 0.89381 0.83359 0.92136 0.95915 0.92605 0.89808 0.87787 0.84099 0.85440 0.90124 0.84739 0.81623 0.84607 0.89338 0.88010 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 9.01 127.69 1.15 2.12 16 2 N -0.53 -14.40 4.49 -931.64 -4.18 -18.58 16 3 C 0.04 1.00 4.00 85.56 0.34 1.34 16 4 C 0.50 17.35 7.36 87.66 0.65 18.00 16 5 O -0.57 -26.19 13.91 -3.03 -0.04 -26.23 16 6 N -0.59 -19.55 2.46 -826.16 -2.03 -21.58 16 7 C 0.22 9.51 4.23 85.63 0.36 9.87 16 8 C -0.53 -29.08 9.94 25.60 0.25 -28.83 16 9 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 10 C 0.01 0.40 5.47 84.65 0.46 0.87 16 11 N -0.95 -59.03 13.96 21.45 0.30 -58.73 16 12 Si 0.94 42.45 27.47 68.60 1.88 44.34 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 15 H -0.23 -8.65 6.54 99.48 0.65 -8.00 16 16 C 0.11 2.39 5.17 86.38 0.45 2.84 16 17 C -0.04 -0.54 6.03 28.79 0.17 -0.36 16 18 C 0.25 4.64 15.43 89.44 1.38 6.03 16 19 N -0.49 -12.65 18.54 20.00 0.37 -12.28 16 20 C 0.15 3.01 5.59 85.56 0.48 3.49 16 21 C 0.18 4.55 6.84 138.46 0.95 5.49 16 22 N -0.40 -10.80 11.44 -60.32 -0.69 -11.49 16 23 O 0.07 1.65 11.08 74.81 0.83 2.48 16 24 C 0.21 4.37 7.97 88.38 0.70 5.08 16 25 C -0.10 -1.10 6.33 -11.51 -0.07 -1.17 16 26 C -0.15 -1.29 10.23 30.60 0.31 -0.98 16 27 C -0.14 -0.87 10.18 30.62 0.31 -0.56 16 28 N -0.49 -12.37 11.55 -303.19 -3.50 -15.88 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 2.44 5.82 -2.39 -0.01 2.43 16 31 H 0.05 1.67 6.74 -2.38 -0.02 1.65 16 32 H 0.09 1.66 7.38 -2.39 -0.02 1.64 16 33 H 0.15 1.96 6.98 -2.39 -0.02 1.94 16 34 H 0.06 2.25 7.13 -2.39 -0.02 2.24 16 35 H 0.02 1.06 6.85 -2.39 -0.02 1.05 16 36 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 37 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 38 H 0.10 1.71 6.44 -2.39 -0.02 1.69 16 39 H 0.14 1.18 7.22 -2.38 -0.02 1.16 16 40 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 1.41 8.12 -2.39 -0.02 1.40 16 42 H 0.13 2.02 7.93 -2.39 -0.02 2.00 16 43 H 0.17 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.10 0.77 8.01 -2.38 -0.02 0.75 16 47 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -86.53 401.35 1.78 -84.75 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.95 Total: 9.98 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 7.90 Total: 23.22 kcal Atomic # 7 Polarization: -128.80 SS G_CDS: -9.73 Total: -138.54 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: 0.79 Total: -23.75 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.34 kcal Total: -86.53 1.78 -84.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365309192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.942 kcal (2) G-P(sol) polarization free energy of solvation -86.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds