Wall clock time and date at job start Wed Apr 1 2020 05:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47540 * 2 1 4 4 C 1.46506 * 119.99800 * 269.99581 * 3 2 1 5 5 C 1.50699 * 109.47352 * 269.99857 * 4 3 2 6 6 H 1.08000 * 119.99828 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00146 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00224 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99948 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47358 * 89.99683 * 9 7 5 11 11 H 1.48498 * 109.46924 * 210.00000 * 9 7 5 12 12 H 1.48500 * 109.47029 * 329.99851 * 9 7 5 13 13 C 1.34773 * 120.00231 * 90.00038 * 3 2 1 14 14 O 1.21283 * 120.00360 * 179.72577 * 13 3 2 15 15 C 1.50706 * 120.00081 * 359.97438 * 13 3 2 16 16 N 1.46895 * 109.47182 * 179.72734 * 15 13 3 17 17 C 1.46901 * 110.99816 * 179.97438 * 16 15 13 18 18 H 1.09006 * 112.85003 * 23.80671 * 17 16 15 19 19 C 1.53780 * 113.61512 * 154.99886 * 17 16 15 20 20 C 1.53780 * 87.08430 * 139.98214 * 19 17 16 21 21 H 1.08993 * 113.61663 * 220.01849 * 20 19 17 22 22 N 1.46503 * 113.61279 * 89.20079 * 20 19 17 23 23 C 1.34770 * 119.99833 * 155.00447 * 22 20 19 24 24 O 1.21280 * 120.00115 * 359.97438 * 23 22 20 25 25 C 1.50701 * 119.99852 * 179.97438 * 23 22 20 26 26 C 1.52998 * 109.47109 * 154.99828 * 25 23 22 27 27 F 1.39901 * 109.47101 * 274.99973 * 25 23 22 28 28 F 1.39906 * 109.47318 * 34.99819 * 25 23 22 29 29 C 1.53780 * 113.61828 * 252.49768 * 17 16 15 30 30 H 1.09001 * 109.46388 * 60.00135 * 1 2 3 31 31 H 1.08990 * 109.47469 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46887 * 300.00656 * 1 2 3 33 33 H 1.08999 * 109.47326 * 239.99182 * 2 1 3 34 34 H 1.09006 * 109.46825 * 120.00024 * 2 1 3 35 35 H 1.08995 * 109.47161 * 30.00561 * 4 3 2 36 36 H 1.09002 * 109.46900 * 149.99872 * 4 3 2 37 37 H 0.96997 * 120.00127 * 179.97438 * 8 7 5 38 38 H 1.09001 * 109.46564 * 299.73030 * 15 13 3 39 39 H 1.08998 * 109.47012 * 59.72084 * 15 13 3 40 40 H 1.00902 * 111.00178 * 56.04567 * 16 15 13 41 41 H 1.09003 * 113.61833 * 254.53239 * 19 17 16 42 42 H 1.09000 * 113.61332 * 25.34637 * 19 17 16 43 43 H 0.97000 * 120.00021 * 335.00211 * 22 20 19 44 44 H 1.09003 * 109.47540 * 60.00155 * 26 25 23 45 45 H 1.09000 * 109.47126 * 179.97438 * 26 25 23 46 46 H 1.09002 * 109.47510 * 299.99822 * 26 25 23 47 47 H 1.09004 * 113.61159 * 334.56774 * 29 17 16 48 48 H 1.08992 * 113.61473 * 105.47005 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0716 -1.2688 5 6 3.6860 1.8348 -1.7038 6 1 4.3428 1.2300 -1.0961 7 6 4.1494 2.3893 -2.8779 8 7 5.3913 2.1821 -3.2578 9 14 3.0131 3.4348 -3.9293 10 1 3.1166 4.8551 -3.5083 11 1 3.4061 3.3115 -5.3560 12 1 1.6134 2.9689 -3.7594 13 6 2.2431 2.0164 1.1671 14 8 2.6522 3.1582 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3160 2.2040 3.5888 17 6 2.0816 1.5441 4.8802 18 1 2.1218 0.4569 4.8134 19 6 2.9242 2.1223 6.0293 20 6 1.6767 1.9706 6.9157 21 1 1.5238 2.8044 7.6007 22 7 1.5815 0.6666 7.5766 23 6 0.8834 0.5413 8.7226 24 8 0.3344 1.5082 9.2070 25 6 0.7849 -0.8002 9.4021 26 6 0.5224 -0.5972 10.8957 27 9 -0.2660 -1.5321 8.8390 28 9 1.9846 -1.4992 9.2303 29 6 0.8448 2.0720 5.6263 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.5819 1.6876 -2.0284 36 1 2.0958 3.1409 -1.1385 37 1 5.7172 2.5719 -4.0840 38 1 0.9422 1.0169 2.5319 39 1 2.6175 0.4159 2.5281 40 1 1.7947 3.0655 3.5234 41 1 3.7531 1.4808 6.3286 42 1 3.2260 3.1577 5.8714 43 1 2.0209 -0.1067 7.1893 44 1 -0.4123 -0.0527 11.0296 45 1 0.4507 -1.5675 11.3871 46 1 1.3412 -0.0270 11.3344 47 1 0.5769 3.0942 5.3588 48 1 -0.0049 1.3899 5.6001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366105818.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:07 Heat of formation + Delta-G solvation = -138.747953 kcal Electronic energy + Delta-G solvation = -30619.841615 eV Core-core repulsion = 25960.748743 eV Total energy + Delta-G solvation = -4659.092873 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.75646 -47.75205 -40.78232 -39.40280 -38.74498 -35.51603 -34.85994 -33.05673 -32.58109 -32.03868 -30.36692 -28.40068 -26.58716 -26.04988 -25.44128 -23.31589 -23.01117 -21.93712 -21.51220 -20.03896 -19.19263 -18.37816 -18.29044 -17.26043 -16.95304 -16.73455 -16.35466 -16.10246 -15.65067 -15.37613 -15.22454 -14.84547 -14.66968 -14.55412 -14.09809 -14.06402 -13.94721 -13.69055 -13.51396 -13.20861 -13.10603 -13.01490 -12.84843 -12.75524 -12.59825 -12.55945 -12.32113 -12.10720 -11.84284 -11.78686 -11.45175 -11.16215 -10.97785 -10.76474 -10.71322 -10.56064 -10.49998 -10.16018 -9.70065 -9.53596 -9.02212 -8.58369 -8.38083 -7.72792 -6.07918 -4.06504 1.55967 2.02344 3.13808 3.28842 3.32196 3.34769 3.36601 3.37246 3.62426 3.86608 3.94659 4.06852 4.20568 4.31326 4.39786 4.56502 4.68928 4.83279 4.96226 4.97502 5.14308 5.19403 5.25646 5.28068 5.31502 5.39545 5.41614 5.45367 5.51246 5.56121 5.63696 5.68655 5.73005 5.92030 6.00647 6.11356 6.34990 6.65521 6.66178 6.87331 6.97439 7.27820 7.31758 7.35038 7.61810 8.25002 8.47793 8.93938 8.99758 9.52313 11.05493 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.022614 B = 0.001862 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.882508 B =15031.660385 C =15385.056923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.897 5.897 9 Si 0.877 3.123 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.506 3.494 14 O -0.528 6.528 15 C 0.042 3.958 16 N -0.658 5.658 17 C 0.068 3.932 18 H 0.096 0.904 19 C -0.131 4.131 20 C 0.114 3.886 21 H 0.110 0.890 22 N -0.692 5.692 23 C 0.489 3.511 24 O -0.500 6.500 25 C 0.281 3.719 26 C -0.183 4.183 27 F -0.181 7.181 28 F -0.188 7.188 29 C -0.179 4.179 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.029 0.971 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.354 0.646 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.409 0.591 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.043 -8.471 25.933 29.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.292 3.708 14 O -0.404 6.404 15 C -0.091 4.091 16 N -0.290 5.290 17 C -0.044 4.044 18 H 0.114 0.886 19 C -0.170 4.170 20 C 0.009 3.991 21 H 0.128 0.872 22 N -0.343 5.343 23 C 0.270 3.730 24 O -0.374 6.374 25 C 0.242 3.758 26 C -0.241 4.241 27 F -0.162 7.162 28 F -0.169 7.169 29 C -0.220 4.220 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.175 0.825 41 H 0.096 0.904 42 H 0.125 0.875 43 H 0.245 0.755 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.117 0.883 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.401 -7.272 26.043 29.345 hybrid contribution -1.164 -0.226 -1.032 1.572 sum -12.565 -7.498 25.011 28.977 Atomic orbital electron populations 1.22234 0.96857 1.01559 1.02134 1.21431 0.93281 0.83964 1.03108 1.47937 1.64356 1.13357 1.07024 1.19630 0.97308 0.93324 0.80065 1.21325 0.95338 1.32850 1.07050 0.90754 1.24866 0.95003 0.95835 0.97388 1.69897 1.15121 1.45028 1.23526 0.86848 0.81414 0.81627 0.79759 1.19931 1.21098 1.19149 1.20222 0.78613 0.87101 0.84895 1.90678 1.44538 1.18213 1.86927 1.21936 0.99934 0.96827 0.90362 1.60025 1.62593 1.06772 0.99590 1.23130 0.94107 0.98415 0.88709 0.88583 1.23480 0.95979 1.03901 0.93613 1.21918 0.98268 0.85195 0.93738 0.87236 1.45709 1.52095 1.12689 1.23763 1.20748 0.80322 0.90053 0.81913 1.90796 1.44531 1.38083 1.64015 1.21373 0.73350 0.84545 0.96563 1.22651 1.06549 1.05579 0.89308 1.93107 1.57290 1.78684 1.87099 1.93080 1.46238 1.80954 1.96625 1.24209 0.98464 1.02984 0.96294 0.92197 0.91980 0.93166 0.89672 0.91516 0.95343 0.94681 0.92588 0.92866 0.88540 0.82542 0.90405 0.87524 0.75500 0.87983 0.88955 0.88686 0.88340 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.65 16 2 C 0.11 1.58 5.93 -4.05 -0.02 1.56 16 3 N -0.59 -11.84 2.46 -175.06 -0.43 -12.27 16 4 C 0.22 5.26 4.23 -5.19 -0.02 5.24 16 5 C -0.53 -15.13 9.94 -34.44 -0.34 -15.47 16 6 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 9 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 13 C 0.51 9.94 7.71 -10.98 -0.08 9.86 16 14 O -0.53 -12.74 15.78 5.56 0.09 -12.65 16 15 C 0.04 0.57 4.57 -4.98 -0.02 0.55 16 16 N -0.66 -8.43 6.24 -107.13 -0.67 -9.10 16 17 C 0.07 0.61 4.06 -66.90 -0.27 0.33 16 18 H 0.10 0.77 7.87 -51.93 -0.41 0.36 16 19 C -0.13 -1.05 7.63 -25.92 -0.20 -1.25 16 20 C 0.11 0.88 4.32 -67.12 -0.29 0.59 16 21 H 0.11 0.94 7.46 -51.93 -0.39 0.55 16 22 N -0.69 -5.02 5.20 -53.02 -0.28 -5.30 16 23 C 0.49 4.20 7.23 -10.99 -0.08 4.12 16 24 O -0.50 -5.63 15.70 5.56 0.09 -5.54 16 25 C 0.28 1.99 2.47 -27.88 -0.07 1.92 16 26 C -0.18 -0.91 8.92 37.16 0.33 -0.58 16 27 F -0.18 -1.50 17.05 2.25 0.04 -1.46 16 28 F -0.19 -1.34 16.51 2.25 0.04 -1.30 16 29 C -0.18 -1.44 7.50 -25.92 -0.19 -1.64 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.57 7.23 -51.93 -0.38 0.19 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.07 0.82 6.43 -51.93 -0.33 0.49 16 35 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 36 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.05 0.60 7.20 -51.93 -0.37 0.23 16 39 H 0.10 1.22 7.38 -51.93 -0.38 0.84 16 40 H 0.35 4.65 7.89 -39.29 -0.31 4.34 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.41 2.32 8.26 -40.82 -0.34 1.99 16 44 H 0.10 0.53 7.87 -51.93 -0.41 0.12 16 45 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.10 0.79 7.82 -51.93 -0.41 0.38 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 402.14 15.07 6.06 6.06 Total: -1.00 -35.64 402.14 -7.36 -43.00 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.42 Total: 3.03 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -0.98 Total: 5.57 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.60 Total: -53.63 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.17 Total: -18.20 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.08 Total: -2.76 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.64 -7.36 -43.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366105818.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.745 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds