Wall clock time and date at job start Wed Apr 1 2020 05:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46983 * 2 1 4 4 C 1.34772 * 119.99787 * 180.02562 * 3 2 1 5 5 O 1.21590 * 120.00311 * 0.02562 * 4 3 2 6 6 N 1.34782 * 120.00059 * 180.02562 * 4 3 2 7 7 C 1.47427 * 125.64485 * 0.02562 * 6 4 3 8 8 C 1.54913 * 104.82989 * 155.83787 * 7 6 4 9 9 C 1.55153 * 101.58171 * 37.00614 * 8 7 6 10 10 H 1.09007 * 110.71810 * 83.03996 * 9 8 7 11 11 N 1.46498 * 110.72184 * 206.13389 * 9 8 7 12 12 C 1.34773 * 120.00354 * 205.00481 * 11 9 8 13 13 O 1.21585 * 119.99724 * 0.02562 * 12 11 9 14 14 N 1.34777 * 120.00491 * 180.02562 * 12 11 9 15 15 C 1.39453 * 120.00069 * 174.98452 * 14 12 11 16 16 C 1.38645 * 119.64558 * 185.39094 * 15 14 12 17 17 C 1.40824 * 118.67541 * 180.02562 * 16 15 14 18 18 C 1.41537 * 120.99799 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00122 * 331.87306 * 18 17 16 20 20 C 1.40037 * 120.00174 * 151.60112 * 18 17 16 21 21 N 1.30745 * 119.99479 * 350.51958 * 20 18 17 22 22 Si 1.86796 * 120.00217 * 170.52279 * 20 18 17 23 23 H 1.48503 * 109.47306 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46925 * 119.99538 * 22 20 18 25 25 H 1.48500 * 109.46913 * 239.99819 * 22 20 18 26 26 C 1.41163 * 118.00062 * 0.25236 * 17 16 15 27 27 C 1.36590 * 119.13123 * 359.49409 * 26 17 16 28 28 N 1.32069 * 121.25551 * 0.52320 * 27 26 17 29 29 C 1.47017 * 125.64933 * 179.97438 * 6 4 3 30 30 H 1.09005 * 109.46734 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46932 * 299.99790 * 1 2 3 32 32 H 1.09003 * 109.47045 * 59.99937 * 1 2 3 33 33 H 1.09006 * 109.47132 * 240.00440 * 2 1 3 34 34 H 1.08998 * 109.47480 * 120.00263 * 2 1 3 35 35 H 0.96994 * 119.99944 * 0.02562 * 3 2 1 36 36 H 1.08999 * 110.36605 * 36.99956 * 7 6 4 37 37 H 1.08998 * 110.45832 * 274.72534 * 7 6 4 38 38 H 1.09003 * 111.00014 * 278.93073 * 8 7 6 39 39 H 1.08993 * 111.00034 * 155.08707 * 8 7 6 40 40 H 0.96997 * 119.99838 * 25.00077 * 11 9 8 41 41 H 0.96998 * 119.99646 * 354.97540 * 14 12 11 42 42 H 1.08002 * 120.66595 * 359.97438 * 16 15 14 43 43 H 0.97001 * 119.99612 * 180.02562 * 21 20 18 44 44 H 1.08008 * 120.43189 * 179.74484 * 26 17 16 45 45 H 1.08000 * 119.36860 * 180.27422 * 27 26 17 46 46 H 1.09002 * 109.88538 * 61.68098 * 29 6 4 47 47 H 1.08998 * 109.88395 * 300.51252 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1335 0.7034 -0.0015 6 7 3.7927 2.8982 0.0000 7 6 2.9496 4.1076 0.0017 8 6 3.8442 5.2138 0.6146 9 6 5.2342 4.8505 0.0288 10 1 5.3467 5.2557 -0.9769 11 7 6.3069 5.3321 0.9025 12 6 7.5287 5.5850 0.3930 13 8 7.7406 5.4138 -0.7919 14 7 8.5158 6.0275 1.1970 15 6 9.8059 6.1893 0.6928 16 6 10.8387 6.5367 1.5502 17 6 12.1333 6.6953 1.0192 18 6 13.2234 7.0496 1.8496 19 1 13.0538 7.6273 2.7462 20 6 14.5211 6.6463 1.5116 21 7 14.7078 5.7924 0.5393 22 14 15.9853 7.3282 2.4499 23 1 15.5088 8.2702 3.4944 24 1 16.7263 6.2119 3.0902 25 1 16.8848 8.0452 1.5106 26 6 12.3100 6.4961 -0.3671 27 6 11.2324 6.1504 -1.1319 28 7 10.0316 6.0101 -0.6003 29 6 5.2046 3.3078 0.0001 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.3880 2.1185 0.0004 36 1 2.0637 3.9516 0.6173 37 1 2.6617 4.3728 -1.0156 38 1 3.8507 5.1526 1.7029 39 1 3.5263 6.2020 0.2825 40 1 6.1378 5.4690 1.8478 41 1 8.3288 6.2336 2.1262 42 1 10.6539 6.6835 2.6041 43 1 15.6067 5.5127 0.3054 44 1 13.2854 6.6116 -0.8164 45 1 11.3641 5.9928 -2.1922 46 1 5.6961 2.9445 -0.9025 47 1 5.7057 2.9109 0.8829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366304326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:47 Heat of formation + Delta-G solvation = -8.276565 kcal Electronic energy + Delta-G solvation = -29280.770638 eV Core-core repulsion = 25078.024616 eV Total energy + Delta-G solvation = -4202.746022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.64294 -39.81908 -38.40800 -37.51645 -35.50313 -34.56010 -34.02623 -33.53096 -31.36819 -30.63259 -30.26912 -28.94389 -27.81895 -25.96564 -24.32401 -22.91478 -22.37767 -21.73414 -21.09578 -20.38240 -20.03872 -18.55127 -18.05166 -17.74122 -16.91852 -16.32771 -15.99125 -15.57942 -15.25462 -14.91196 -14.86864 -14.54420 -14.30147 -14.24590 -14.09948 -13.65699 -13.43897 -13.28149 -13.02602 -12.82929 -12.67213 -12.46741 -12.35713 -12.32192 -12.13153 -11.86945 -11.79962 -11.41381 -11.22881 -11.16113 -10.96478 -10.38170 -10.34741 -10.03264 -9.74637 -9.59290 -9.44051 -9.39215 -9.02441 -8.75300 -7.97176 -7.70825 -7.01952 -6.74478 -4.60855 2.24934 2.72272 2.78436 2.91068 3.01190 3.04132 3.08951 3.23616 3.64978 3.77207 3.87839 4.09246 4.38314 4.43761 4.59192 4.67841 4.70072 4.73196 4.91120 4.94519 5.00134 5.12203 5.39398 5.44308 5.51246 5.55993 5.57764 5.70364 5.77333 5.82387 5.93482 6.01598 6.18060 6.50259 6.53907 6.61834 6.74159 6.78243 6.94189 7.13124 7.21864 7.44521 7.54396 7.68853 7.90906 8.08850 8.29978 8.36715 8.49678 8.75136 8.77229 9.08488 9.73576 10.13522 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.001711 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.781997 B =16365.246683 C =16689.675316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 N -0.747 5.747 4 C 0.720 3.280 5 O -0.584 6.584 6 N -0.635 5.635 7 C 0.102 3.898 8 C -0.138 4.138 9 C 0.159 3.841 10 H 0.110 0.890 11 N -0.744 5.744 12 C 0.691 3.309 13 O -0.526 6.526 14 N -0.669 5.669 15 C 0.364 3.636 16 C -0.303 4.303 17 C 0.148 3.852 18 C -0.458 4.458 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.792 5.792 22 Si 0.915 3.085 23 H -0.260 1.260 24 H -0.274 1.274 25 H -0.271 1.271 26 C -0.219 4.219 27 C 0.104 3.896 28 N -0.550 5.550 29 C 0.113 3.887 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.394 0.606 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.393 0.607 41 H 0.403 0.597 42 H 0.101 0.899 43 H 0.282 0.718 44 H 0.128 0.872 45 H 0.123 0.877 46 H 0.076 0.924 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.689 -2.723 2.809 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 N -0.404 5.404 4 C 0.421 3.579 5 O -0.462 6.462 6 N -0.374 5.374 7 C -0.022 4.022 8 C -0.177 4.177 9 C 0.052 3.948 10 H 0.128 0.872 11 N -0.402 5.402 12 C 0.391 3.609 13 O -0.396 6.396 14 N -0.316 5.316 15 C 0.135 3.865 16 C -0.329 4.329 17 C 0.139 3.861 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.143 4.143 21 N -0.418 5.418 22 Si 0.739 3.261 23 H -0.184 1.184 24 H -0.199 1.199 25 H -0.197 1.197 26 C -0.243 4.243 27 C -0.047 4.047 28 N -0.269 5.269 29 C -0.012 4.012 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.229 0.771 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.227 0.773 41 H 0.237 0.763 42 H 0.119 0.881 43 H 0.093 0.907 44 H 0.145 0.855 45 H 0.140 0.860 46 H 0.094 0.906 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.460 -4.072 0.967 25.802 hybrid contribution 0.931 0.895 1.973 2.358 sum -24.529 -3.177 2.939 24.908 Atomic orbital electron populations 1.22009 0.94438 1.03293 1.02439 1.21161 0.93760 0.81783 1.02493 1.45175 1.05198 1.09069 1.80988 1.15423 0.82590 0.81796 0.78041 1.90965 1.54974 1.42409 1.57814 1.47498 1.07992 1.03614 1.78343 1.22251 0.94210 0.84623 1.01086 1.23074 0.94158 0.99019 1.01450 1.21647 0.85187 0.91918 0.96042 0.87243 1.45115 1.10138 1.73248 1.11716 1.16097 0.79985 0.79035 0.85792 1.91043 1.80139 1.55231 1.13180 1.42547 1.07348 1.68493 1.13257 1.17760 0.82059 0.96223 0.90448 1.21207 0.93827 1.20010 0.97887 1.17596 0.90818 0.85770 0.91885 1.19575 0.90550 1.30647 1.08154 0.90131 1.25950 1.00677 0.93026 0.94656 1.69767 1.24199 1.23161 1.24680 0.86156 0.80257 0.79597 0.80079 1.18400 1.19897 1.19661 1.22010 0.99527 1.08248 0.94471 1.21632 0.87804 0.96808 0.98421 1.67203 1.24219 1.24765 1.10701 1.22321 0.80589 0.94876 1.03403 0.90626 0.92035 0.91989 0.91564 0.91618 0.77140 0.90757 0.90891 0.89891 0.88844 0.77281 0.76325 0.88060 0.90722 0.85457 0.85986 0.90570 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 10.03 37.16 0.37 -0.27 16 2 C 0.13 0.97 6.39 -4.04 -0.03 0.94 16 3 N -0.75 -6.18 5.52 -65.22 -0.36 -6.54 16 4 C 0.72 9.03 8.49 -86.92 -0.74 8.30 16 5 O -0.58 -10.20 16.67 5.29 0.09 -10.11 16 6 N -0.64 -6.68 3.33 -176.24 -0.59 -7.27 16 7 C 0.10 0.62 6.57 -2.53 -0.02 0.60 16 8 C -0.14 -0.84 6.71 -24.58 -0.17 -1.01 16 9 C 0.16 1.68 3.32 -66.10 -0.22 1.47 16 10 H 0.11 1.35 7.55 -51.92 -0.39 0.96 16 11 N -0.74 -8.87 5.11 -56.88 -0.29 -9.17 16 12 C 0.69 12.40 8.52 -86.92 -0.74 11.65 16 13 O -0.53 -11.97 14.25 5.29 0.08 -11.89 16 14 N -0.67 -12.17 5.40 -15.87 -0.09 -12.25 16 15 C 0.36 8.56 7.42 -154.69 -1.15 7.41 16 16 C -0.30 -7.27 9.74 -38.45 -0.37 -7.64 16 17 C 0.15 3.90 5.57 -106.55 -0.59 3.30 16 18 C -0.46 -11.80 9.12 -37.65 -0.34 -12.14 16 19 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 20 C 0.08 1.85 5.30 -17.34 -0.09 1.76 16 21 N -0.79 -20.18 10.84 55.55 0.60 -19.58 16 22 Si 0.91 18.18 29.57 -169.99 -5.03 13.16 16 23 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 C -0.22 -5.74 8.71 -39.07 -0.34 -6.09 16 27 C 0.10 2.63 11.10 -18.04 -0.20 2.43 16 28 N -0.55 -14.20 7.86 -12.76 -0.10 -14.30 16 29 C 0.11 1.42 6.62 -3.07 -0.02 1.40 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.39 2.07 6.95 -40.82 -0.28 1.78 16 36 H 0.07 0.28 7.30 -51.93 -0.38 -0.10 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.44 8.01 -51.93 -0.42 0.02 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.39 3.38 8.58 -40.82 -0.35 3.03 16 41 H 0.40 5.54 8.71 -40.82 -0.36 5.19 16 42 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 43 H 0.28 6.50 8.29 -40.82 -0.34 6.17 16 44 H 0.13 3.38 6.28 -52.48 -0.33 3.05 16 45 H 0.12 2.79 8.06 -52.49 -0.42 2.37 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.07 1.00 8.03 -51.93 -0.42 0.59 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -36.68 392.30 -11.11 -47.79 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -6.70 Total: 12.13 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: -4.65 Total: 12.12 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -0.82 Total: -69.10 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: 0.16 Total: -22.01 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.68 -11.11 -47.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366304326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.517 kcal (2) G-P(sol) polarization free energy of solvation -36.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds