Wall clock time and date at job start Wed Apr 1 2020 05:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46983 * 2 1 4 4 C 1.34772 * 119.99787 * 180.02562 * 3 2 1 5 5 O 1.21590 * 120.00311 * 0.02562 * 4 3 2 6 6 N 1.34782 * 120.00059 * 180.02562 * 4 3 2 7 7 C 1.47427 * 125.64485 * 0.02562 * 6 4 3 8 8 C 1.54913 * 104.82989 * 155.83787 * 7 6 4 9 9 C 1.55153 * 101.58171 * 37.00614 * 8 7 6 10 10 H 1.09007 * 110.71810 * 83.03996 * 9 8 7 11 11 N 1.46498 * 110.72184 * 206.13389 * 9 8 7 12 12 C 1.34773 * 120.00354 * 205.00481 * 11 9 8 13 13 O 1.21585 * 119.99724 * 0.02562 * 12 11 9 14 14 N 1.34777 * 120.00491 * 180.02562 * 12 11 9 15 15 C 1.39453 * 120.00069 * 174.98452 * 14 12 11 16 16 C 1.38645 * 119.64558 * 185.39094 * 15 14 12 17 17 C 1.40824 * 118.67541 * 180.02562 * 16 15 14 18 18 C 1.41537 * 120.99799 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00122 * 331.87306 * 18 17 16 20 20 C 1.40037 * 120.00174 * 151.60112 * 18 17 16 21 21 N 1.30745 * 119.99479 * 350.51958 * 20 18 17 22 22 Si 1.86796 * 120.00217 * 170.52279 * 20 18 17 23 23 H 1.48503 * 109.47306 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46925 * 119.99538 * 22 20 18 25 25 H 1.48500 * 109.46913 * 239.99819 * 22 20 18 26 26 C 1.41163 * 118.00062 * 0.25236 * 17 16 15 27 27 C 1.36590 * 119.13123 * 359.49409 * 26 17 16 28 28 N 1.32069 * 121.25551 * 0.52320 * 27 26 17 29 29 C 1.47017 * 125.64933 * 179.97438 * 6 4 3 30 30 H 1.09005 * 109.46734 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46932 * 299.99790 * 1 2 3 32 32 H 1.09003 * 109.47045 * 59.99937 * 1 2 3 33 33 H 1.09006 * 109.47132 * 240.00440 * 2 1 3 34 34 H 1.08998 * 109.47480 * 120.00263 * 2 1 3 35 35 H 0.96994 * 119.99944 * 0.02562 * 3 2 1 36 36 H 1.08999 * 110.36605 * 36.99956 * 7 6 4 37 37 H 1.08998 * 110.45832 * 274.72534 * 7 6 4 38 38 H 1.09003 * 111.00014 * 278.93073 * 8 7 6 39 39 H 1.08993 * 111.00034 * 155.08707 * 8 7 6 40 40 H 0.96997 * 119.99838 * 25.00077 * 11 9 8 41 41 H 0.96998 * 119.99646 * 354.97540 * 14 12 11 42 42 H 1.08002 * 120.66595 * 359.97438 * 16 15 14 43 43 H 0.97001 * 119.99612 * 180.02562 * 21 20 18 44 44 H 1.08008 * 120.43189 * 179.74484 * 26 17 16 45 45 H 1.08000 * 119.36860 * 180.27422 * 27 26 17 46 46 H 1.09002 * 109.88538 * 61.68098 * 29 6 4 47 47 H 1.08998 * 109.88395 * 300.51252 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1335 0.7034 -0.0015 6 7 3.7927 2.8982 0.0000 7 6 2.9496 4.1076 0.0017 8 6 3.8442 5.2138 0.6146 9 6 5.2342 4.8505 0.0288 10 1 5.3467 5.2557 -0.9769 11 7 6.3069 5.3321 0.9025 12 6 7.5287 5.5850 0.3930 13 8 7.7406 5.4138 -0.7919 14 7 8.5158 6.0275 1.1970 15 6 9.8059 6.1893 0.6928 16 6 10.8387 6.5367 1.5502 17 6 12.1333 6.6953 1.0192 18 6 13.2234 7.0496 1.8496 19 1 13.0538 7.6273 2.7462 20 6 14.5211 6.6463 1.5116 21 7 14.7078 5.7924 0.5393 22 14 15.9853 7.3282 2.4499 23 1 15.5088 8.2702 3.4944 24 1 16.7263 6.2119 3.0902 25 1 16.8848 8.0452 1.5106 26 6 12.3100 6.4961 -0.3671 27 6 11.2324 6.1504 -1.1319 28 7 10.0316 6.0101 -0.6003 29 6 5.2046 3.3078 0.0001 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.3880 2.1185 0.0004 36 1 2.0637 3.9516 0.6173 37 1 2.6617 4.3728 -1.0156 38 1 3.8507 5.1526 1.7029 39 1 3.5263 6.2020 0.2825 40 1 6.1378 5.4690 1.8478 41 1 8.3288 6.2336 2.1262 42 1 10.6539 6.6835 2.6041 43 1 15.6067 5.5127 0.3054 44 1 13.2854 6.6116 -0.8164 45 1 11.3641 5.9928 -2.1922 46 1 5.6961 2.9445 -0.9025 47 1 5.7057 2.9109 0.8829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001366304326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:44 Heat of formation + Delta-G solvation = -35.548451 kcal Electronic energy + Delta-G solvation = -29281.953236 eV Core-core repulsion = 25078.024616 eV Total energy + Delta-G solvation = -4203.928620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.69724 -41.17426 -39.94144 -38.69763 -36.31894 -36.25799 -35.38357 -35.16041 -32.56995 -32.22566 -30.93350 -30.37044 -29.01201 -27.89230 -25.17713 -23.83775 -23.59887 -23.49487 -22.13029 -21.75629 -21.06573 -19.70601 -19.59064 -19.06102 -17.92687 -17.60605 -17.17119 -16.90143 -16.48916 -16.33246 -16.15472 -15.92330 -15.74247 -15.42570 -15.09602 -14.98717 -14.74146 -14.49620 -14.25054 -14.17594 -13.97645 -13.54183 -13.24226 -13.18817 -12.92471 -12.87620 -12.81627 -12.70915 -12.62545 -12.37521 -12.08180 -11.86864 -11.81464 -11.47090 -11.45211 -11.28107 -11.18622 -10.32075 -10.20120 -9.93057 -9.61646 -9.57905 -8.85072 -8.59543 -6.57719 0.83627 0.99366 1.32014 1.41831 1.56249 1.57450 1.72659 2.03566 2.20726 2.26971 2.85409 2.97958 3.18292 3.46118 3.58031 3.76467 4.05882 4.11187 4.13493 4.16568 4.23666 4.31697 4.52976 4.57711 4.67265 4.72644 4.77373 4.85270 4.89967 4.94440 5.00087 5.04260 5.05593 5.07510 5.19532 5.25993 5.27631 5.47615 5.49139 5.51389 5.64189 5.89408 5.97276 5.97448 6.26683 6.55559 6.80142 6.83967 6.91934 7.00372 7.46741 7.60962 7.90244 8.30920 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.001711 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.781997 B =16365.246683 C =16689.675316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.128 3.872 3 N -0.727 5.727 4 C 0.710 3.290 5 O -0.645 6.645 6 N -0.633 5.633 7 C 0.097 3.903 8 C -0.119 4.119 9 C 0.159 3.841 10 H 0.092 0.908 11 N -0.717 5.717 12 C 0.689 3.311 13 O -0.578 6.578 14 N -0.657 5.657 15 C 0.364 3.636 16 C -0.310 4.310 17 C 0.119 3.881 18 C -0.483 4.483 19 H 0.089 0.911 20 C 0.033 3.967 21 N -0.824 5.824 22 Si 0.993 3.007 23 H -0.252 1.252 24 H -0.268 1.268 25 H -0.265 1.265 26 C -0.238 4.238 27 C 0.097 3.903 28 N -0.575 5.575 29 C 0.117 3.883 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.413 0.587 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.415 0.585 41 H 0.424 0.576 42 H 0.126 0.874 43 H 0.290 0.710 44 H 0.116 0.884 45 H 0.136 0.864 46 H 0.036 0.964 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.286 -1.295 4.942 28.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.004 3.996 3 N -0.385 5.385 4 C 0.411 3.589 5 O -0.527 6.527 6 N -0.371 5.371 7 C -0.024 4.024 8 C -0.158 4.158 9 C 0.052 3.948 10 H 0.110 0.890 11 N -0.375 5.375 12 C 0.389 3.611 13 O -0.452 6.452 14 N -0.307 5.307 15 C 0.134 3.866 16 C -0.336 4.336 17 C 0.111 3.889 18 C -0.514 4.514 19 H 0.107 0.893 20 C -0.183 4.183 21 N -0.450 5.450 22 Si 0.813 3.187 23 H -0.176 1.176 24 H -0.193 1.193 25 H -0.190 1.190 26 C -0.262 4.262 27 C -0.054 4.054 28 N -0.295 5.295 29 C -0.009 4.009 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.251 0.749 36 H 0.128 0.872 37 H 0.106 0.894 38 H 0.120 0.880 39 H 0.138 0.862 40 H 0.253 0.747 41 H 0.263 0.737 42 H 0.144 0.856 43 H 0.101 0.899 44 H 0.134 0.866 45 H 0.153 0.847 46 H 0.055 0.945 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -28.199 -2.602 3.166 28.495 hybrid contribution 1.638 0.381 1.284 2.116 sum -26.561 -2.221 4.450 27.022 Atomic orbital electron populations 1.21946 0.91152 1.04340 1.03518 1.21274 0.96270 0.81012 1.01087 1.45038 1.03818 1.10199 1.79396 1.15764 0.83492 0.81712 0.77912 1.90918 1.56790 1.44491 1.60488 1.47466 1.07689 1.04439 1.77537 1.22624 0.94573 0.82310 1.02920 1.23098 0.90032 1.00227 1.02395 1.21723 0.87199 0.90189 0.95697 0.88994 1.44831 1.08263 1.71416 1.13008 1.16305 0.81183 0.78545 0.85093 1.91016 1.81312 1.57270 1.15579 1.42356 1.05755 1.68195 1.14395 1.18018 0.84017 0.94823 0.89789 1.21403 0.93219 1.19843 0.99115 1.18017 0.92323 0.86363 0.92214 1.19902 0.91437 1.31415 1.08669 0.89338 1.26908 1.03286 0.92690 0.95392 1.69836 1.25468 1.23847 1.25894 0.84994 0.76091 0.78937 0.78685 1.17560 1.19258 1.19005 1.21954 0.99221 1.10045 0.94975 1.21878 0.87804 0.96478 0.99209 1.67314 1.24240 1.25843 1.12117 1.22084 0.81900 0.96321 1.00622 0.89654 0.90750 0.90980 0.93261 0.92972 0.74948 0.87186 0.89438 0.87989 0.86166 0.74737 0.73732 0.85635 0.89905 0.86639 0.84662 0.94535 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.03 71.98 0.72 -0.09 16 2 C 0.13 1.79 6.39 86.38 0.55 2.34 16 3 N -0.73 -10.97 5.52 -478.51 -2.64 -13.61 16 4 C 0.71 17.83 8.49 179.05 1.52 19.35 16 5 O -0.64 -23.76 16.67 -4.00 -0.07 -23.83 16 6 N -0.63 -12.80 3.33 -829.75 -2.76 -15.56 16 7 C 0.10 0.83 6.57 86.86 0.57 1.40 16 8 C -0.12 -0.98 6.71 31.99 0.21 -0.77 16 9 C 0.16 3.18 3.32 46.18 0.15 3.33 16 10 H 0.09 2.25 7.55 -2.38 -0.02 2.23 16 11 N -0.72 -16.07 5.11 -452.15 -2.31 -18.38 16 12 C 0.69 24.57 8.52 179.06 1.53 26.10 16 13 O -0.58 -27.02 14.25 -3.98 -0.06 -27.08 16 14 N -0.66 -23.46 5.40 -322.37 -1.74 -25.20 16 15 C 0.36 17.25 7.42 132.76 0.98 18.23 16 16 C -0.31 -14.92 9.74 23.00 0.22 -14.70 16 17 C 0.12 6.42 5.57 -21.11 -0.12 6.31 16 18 C -0.48 -25.09 9.12 23.52 0.21 -24.88 16 19 H 0.09 4.30 7.87 -2.91 -0.02 4.28 16 20 C 0.03 1.62 5.30 85.29 0.45 2.07 16 21 N -0.82 -42.70 10.84 21.84 0.24 -42.47 16 22 Si 0.99 36.77 29.57 68.60 2.03 38.80 16 23 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 24 H -0.27 -9.60 7.11 99.48 0.71 -8.90 16 25 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 26 C -0.24 -12.97 8.71 22.60 0.20 -12.78 16 27 C 0.10 5.09 11.10 84.27 0.94 6.03 16 28 N -0.58 -30.53 7.86 -194.28 -1.53 -32.05 16 29 C 0.12 3.03 6.62 86.73 0.57 3.60 16 30 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.07 0.24 8.14 -2.39 -0.02 0.23 16 32 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.41 3.01 6.95 -92.71 -0.64 2.37 16 36 H 0.11 0.24 7.30 -2.39 -0.02 0.23 16 37 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.10 0.55 8.01 -2.39 -0.02 0.53 16 39 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.42 5.93 8.58 -92.71 -0.80 5.13 16 41 H 0.42 10.89 8.71 -92.71 -0.81 10.08 16 42 H 0.13 5.25 8.06 -2.91 -0.02 5.23 16 43 H 0.29 13.54 8.29 -92.71 -0.77 12.77 16 44 H 0.12 6.43 6.28 -2.91 -0.02 6.42 16 45 H 0.14 6.47 8.06 -2.91 -0.02 6.45 16 46 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.05 1.57 8.03 -2.39 -0.02 1.55 16 Total: -1.00 -86.45 392.30 -1.32 -87.77 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -1.21 Total: 36.05 kcal Atomic # 6 Polarization: 26.83 SS G_CDS: 8.72 Total: 35.55 kcal Atomic # 7 Polarization: -136.54 SS G_CDS: -10.74 Total: -147.27 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.12 Total: -50.91 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Total: -86.45 -1.32 -87.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366304326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.225 kcal (2) G-P(sol) polarization free energy of solvation -86.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds