Wall clock time and date at job start Wed Apr 1 2020 04:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47434 * 2 1 4 4 C 1.46503 * 119.99747 * 269.99740 * 3 2 1 5 5 C 1.50701 * 109.47302 * 269.99486 * 4 3 2 6 6 H 1.07996 * 119.99995 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99962 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00003 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99881 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46940 * 60.00791 * 9 7 5 11 11 H 1.48499 * 109.46898 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47207 * 300.00158 * 9 7 5 13 13 C 1.34777 * 120.00062 * 90.00228 * 3 2 1 14 14 O 1.21281 * 119.99890 * 180.02562 * 13 3 2 15 15 C 1.50696 * 119.99785 * 359.97438 * 13 3 2 16 16 N 1.46905 * 109.47026 * 180.02562 * 15 13 3 17 17 C 1.46900 * 110.99977 * 180.02562 * 16 15 13 18 18 H 1.08991 * 109.47118 * 34.99650 * 17 16 15 19 19 C 1.53006 * 109.46916 * 274.99671 * 17 16 15 20 20 C 1.53000 * 109.47017 * 155.00200 * 17 16 15 21 21 N 1.46499 * 109.46840 * 304.99523 * 20 17 16 22 22 C 1.34779 * 119.99872 * 180.02562 * 21 20 17 23 23 O 1.21278 * 120.00071 * 359.97438 * 22 21 20 24 24 C 1.50703 * 119.99944 * 180.02562 * 22 21 20 25 25 H 1.08995 * 115.54910 * 34.33041 * 24 22 21 26 26 C 1.53001 * 117.49930 * 248.62367 * 24 22 21 27 27 C 1.52997 * 117.49802 * 179.97438 * 24 22 21 28 28 F 1.39901 * 117.50118 * 214.97749 * 27 24 22 29 29 F 1.39906 * 117.50211 * 0.02562 * 27 24 22 30 30 H 1.08992 * 109.47442 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46997 * 300.00518 * 1 2 3 32 32 H 1.09008 * 109.46490 * 59.99780 * 1 2 3 33 33 H 1.09005 * 109.46966 * 239.99838 * 2 1 3 34 34 H 1.09004 * 109.47201 * 120.00217 * 2 1 3 35 35 H 1.08991 * 109.47168 * 30.00363 * 4 3 2 36 36 H 1.09005 * 109.46700 * 149.99864 * 4 3 2 37 37 H 0.96999 * 120.00084 * 179.97438 * 8 7 5 38 38 H 1.08994 * 109.47235 * 60.00241 * 15 13 3 39 39 H 1.09001 * 109.47154 * 299.99893 * 15 13 3 40 40 H 1.00900 * 110.99959 * 56.04514 * 16 15 13 41 41 H 1.09001 * 109.47241 * 299.99904 * 19 17 16 42 42 H 1.08996 * 109.46751 * 60.00267 * 19 17 16 43 43 H 1.09002 * 109.46824 * 180.02562 * 19 17 16 44 44 H 1.09002 * 109.47398 * 64.99849 * 20 17 16 45 45 H 1.09001 * 109.47194 * 185.00030 * 20 17 16 46 46 H 0.97000 * 120.00420 * 0.02562 * 21 20 17 47 47 H 1.09000 * 117.49429 * 0.02562 * 26 24 22 48 48 H 1.08999 * 117.50024 * 145.02120 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3493 3.1254 -3.6181 9 14 5.9133 2.0954 -3.4174 10 1 6.1404 0.6386 -3.5947 11 1 6.1609 2.7954 -4.7035 12 1 6.8412 2.6188 -2.3829 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1601 1.1672 15 6 1.9914 1.3063 2.4722 16 7 2.3092 2.2064 3.5888 17 6 2.0758 1.5461 4.8802 18 1 2.3274 0.4888 4.7983 19 6 0.6030 1.6914 5.2684 20 6 2.9523 2.1976 5.9518 21 7 4.3529 2.1644 5.5235 22 6 5.3119 2.6851 6.3145 23 8 5.0153 3.1815 7.3806 24 6 6.7526 2.6516 5.8737 25 1 6.9190 2.7610 4.8021 26 6 7.7073 1.7404 6.6479 27 6 7.7939 3.2593 6.8156 28 9 8.8870 3.9118 6.2356 29 9 7.3358 3.8031 8.0205 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.5818 1.6877 -2.0284 36 1 2.0956 3.1410 -1.1384 37 1 3.6753 3.5159 -4.4440 38 1 2.6212 0.4186 2.5302 39 1 0.9432 1.0126 2.5298 40 1 1.7842 3.0655 3.5215 41 1 0.3514 2.7488 5.3503 42 1 -0.0214 1.2274 4.5049 43 1 0.4299 1.2019 6.2268 44 1 2.6409 3.2321 6.0964 45 1 2.8460 1.6517 6.8893 46 1 4.5901 1.7677 4.6707 47 1 7.2931 1.1650 7.4758 48 1 8.5019 1.2501 6.0857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001371184958.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:02 Heat of formation + Delta-G solvation = -162.692545 kcal Electronic energy + Delta-G solvation = -30847.828200 eV Core-core repulsion = 26187.697012 eV Total energy + Delta-G solvation = -4660.131188 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.70364 -48.38578 -40.96813 -40.63830 -38.34147 -36.87179 -36.59338 -35.17313 -34.81660 -32.14655 -31.47879 -29.31898 -27.93622 -26.91314 -24.90507 -24.55013 -23.77852 -23.53021 -22.02439 -21.22349 -19.91467 -19.27015 -18.60537 -18.25564 -17.77501 -17.47316 -17.39039 -17.06881 -16.69061 -16.54364 -16.35253 -16.00583 -15.63084 -15.41617 -15.04420 -14.95406 -14.69351 -14.63585 -14.47778 -14.45664 -14.13018 -13.87091 -13.68212 -13.49417 -13.43352 -13.39813 -13.24442 -13.08598 -12.88537 -12.65082 -12.52220 -12.46622 -12.27025 -12.12570 -11.91028 -11.80442 -11.70102 -11.25243 -10.92601 -10.62022 -10.49780 -10.05199 -9.44419 -9.30905 -8.19865 -6.34697 1.22408 1.38302 1.42706 1.49620 1.84363 1.93196 2.07749 2.28293 2.34329 2.44855 3.09761 3.18849 3.22056 3.39844 3.53570 3.77484 3.85153 3.91942 4.12275 4.17685 4.30114 4.39661 4.47616 4.49527 4.52843 4.57722 4.66317 4.69004 4.76436 4.79041 4.87110 4.96466 5.02408 5.02712 5.08979 5.25147 5.28524 5.41868 5.45206 5.61149 5.87562 6.00517 6.09725 6.30256 6.52268 6.74298 6.89743 7.17627 7.32238 7.58958 8.86783 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008496 B = 0.002812 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3294.817285 B = 9956.264828 C =12643.309257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.539 4.539 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.966 3.034 10 H -0.258 1.258 11 H -0.282 1.282 12 H -0.277 1.277 13 C 0.492 3.508 14 O -0.588 6.588 15 C 0.060 3.940 16 N -0.683 5.683 17 C 0.081 3.919 18 H 0.110 0.890 19 C -0.178 4.178 20 C 0.132 3.868 21 N -0.694 5.694 22 C 0.534 3.466 23 O -0.574 6.574 24 C -0.199 4.199 25 H 0.166 0.834 26 C -0.106 4.106 27 C 0.192 3.808 28 F -0.165 7.165 29 F -0.164 7.164 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.018 0.982 36 H -0.008 1.008 37 H 0.266 0.734 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.345 0.655 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.049 0.951 45 H 0.082 0.918 46 H 0.417 0.583 47 H 0.138 0.862 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 -13.120 20.197 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.578 4.578 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.791 3.209 10 H -0.182 1.182 11 H -0.208 1.208 12 H -0.202 1.202 13 C 0.281 3.719 14 O -0.468 6.468 15 C -0.072 4.072 16 N -0.316 5.316 17 C -0.029 4.029 18 H 0.128 0.872 19 C -0.237 4.237 20 C 0.008 3.992 21 N -0.345 5.345 22 C 0.320 3.680 23 O -0.454 6.454 24 C -0.221 4.221 25 H 0.184 0.816 26 C -0.143 4.143 27 C 0.155 3.845 28 F -0.146 7.146 29 F -0.144 7.144 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.036 0.964 36 H 0.011 0.989 37 H 0.074 0.926 38 H 0.141 0.859 39 H 0.102 0.898 40 H 0.164 0.836 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.067 0.933 45 H 0.100 0.900 46 H 0.254 0.746 47 H 0.156 0.844 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.038 -12.209 20.761 24.085 hybrid contribution -0.086 0.930 -1.252 1.562 sum -0.048 -11.279 19.510 22.536 Atomic orbital electron populations 1.22158 0.94883 1.03393 1.01508 1.21737 0.95028 0.81387 1.04041 1.48280 1.64116 1.15122 1.06180 1.18635 0.95152 0.91357 0.80690 1.21706 0.97926 1.31810 1.06361 0.92516 1.25872 1.02323 0.94558 0.96554 1.70051 1.37862 1.34378 1.14839 0.85488 0.79136 0.79074 0.77251 1.18236 1.20777 1.20222 1.21380 0.77278 0.86684 0.86567 1.90661 1.47466 1.20778 1.87917 1.21856 1.02484 0.96182 0.86665 1.60165 1.63528 1.07104 1.00794 1.21851 0.94274 0.99480 0.87286 0.87205 1.22397 0.95256 1.02581 1.03447 1.21447 0.79668 1.00854 0.97246 1.45679 1.06621 1.59417 1.22739 1.19570 0.86641 0.77880 0.83911 1.90761 1.83582 1.46561 1.24483 1.23722 0.90370 1.05640 1.02361 0.81625 1.24477 0.99607 0.88261 1.02003 1.20015 0.87473 0.94156 0.82903 1.93032 1.54185 1.83741 1.83599 1.93061 1.88434 1.87914 1.45014 0.88698 0.92031 0.94767 0.91323 0.87602 0.96439 0.98945 0.92550 0.85896 0.89762 0.83585 0.92842 0.91280 0.90005 0.93298 0.89968 0.74571 0.84404 0.81491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 10.24 71.98 0.74 -2.71 16 2 C 0.10 2.66 5.93 86.38 0.51 3.17 16 3 N -0.61 -23.54 2.46 -826.16 -2.03 -25.57 16 4 C 0.26 13.83 5.16 85.63 0.44 14.27 16 5 C -0.54 -30.31 9.39 25.60 0.24 -30.07 16 6 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 9 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 10 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 C 0.49 18.31 7.71 87.66 0.68 18.98 16 14 O -0.59 -28.74 15.78 -3.03 -0.05 -28.79 16 15 C 0.06 1.28 4.52 85.55 0.39 1.67 16 16 N -0.68 -14.38 5.31 -495.58 -2.63 -17.01 16 17 C 0.08 1.08 2.75 44.92 0.12 1.20 16 18 H 0.11 1.01 7.80 -2.39 -0.02 0.99 16 19 C -0.18 -1.94 9.16 71.98 0.66 -1.28 16 20 C 0.13 2.26 5.37 86.38 0.46 2.73 16 21 N -0.69 -13.07 5.39 -463.05 -2.50 -15.56 16 22 C 0.53 12.37 7.61 87.66 0.67 13.04 16 23 O -0.57 -17.93 15.14 -3.02 -0.05 -17.98 16 24 C -0.20 -3.55 6.17 -11.54 -0.07 -3.62 16 25 H 0.17 2.44 8.14 -2.39 -0.02 2.42 16 26 C -0.11 -1.23 10.21 30.61 0.31 -0.92 16 27 C 0.19 4.09 5.19 30.61 0.16 4.25 16 28 F -0.17 -3.80 17.60 44.97 0.79 -3.01 16 29 F -0.16 -4.63 15.71 44.97 0.71 -3.93 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.17 7.22 -2.39 -0.02 1.15 16 32 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.07 2.01 8.07 -2.38 -0.02 2.00 16 34 H 0.11 1.91 6.44 -2.38 -0.02 1.89 16 35 H 0.02 0.95 8.07 -2.39 -0.02 0.93 16 36 H -0.01 -0.47 7.42 -2.38 -0.02 -0.49 16 37 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.12 2.01 7.31 -2.39 -0.02 1.99 16 39 H 0.08 1.36 6.48 -2.39 -0.02 1.34 16 40 H 0.35 8.64 8.17 -89.69 -0.73 7.91 16 41 H 0.05 0.71 8.13 -2.39 -0.02 0.69 16 42 H 0.07 0.69 7.45 -2.39 -0.02 0.67 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.42 6.98 8.14 -92.71 -0.75 6.23 16 47 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.17 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -83.46 408.37 1.83 -81.63 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -0.49 Total: 18.51 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 5.77 Total: 21.49 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -6.87 Total: -114.02 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -0.09 Total: -46.77 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 1.50 Total: -6.94 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -83.46 1.83 -81.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371184958.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.066 kcal (2) G-P(sol) polarization free energy of solvation -83.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds