Wall clock time and date at job start Wed Apr 1 2020 04:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47229 * 2 1 4 4 C 1.46499 * 120.00075 * 270.00123 * 3 2 1 5 5 C 1.50703 * 109.46932 * 269.99888 * 4 3 2 6 6 H 1.08003 * 119.99966 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00246 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99533 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00242 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46949 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46868 * 120.00310 * 9 7 5 12 12 H 1.48499 * 109.47045 * 240.00269 * 9 7 5 13 13 C 1.34777 * 120.00094 * 90.00205 * 3 2 1 14 14 O 1.21272 * 120.00239 * 180.02562 * 13 3 2 15 15 C 1.50707 * 119.99544 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.46733 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99953 * 179.97438 * 16 15 13 18 18 H 1.09007 * 109.47209 * 325.00624 * 17 16 15 19 19 C 1.53008 * 109.46818 * 85.00184 * 17 16 15 20 20 C 1.52998 * 109.47340 * 205.00137 * 17 16 15 21 21 N 1.46495 * 109.46945 * 55.00185 * 20 17 16 22 22 C 1.34783 * 120.00138 * 179.97438 * 21 20 17 23 23 O 1.21280 * 119.99508 * 0.02562 * 22 21 20 24 24 C 1.50702 * 120.00171 * 179.97438 * 22 21 20 25 25 H 1.09002 * 115.56044 * 34.30916 * 24 22 21 26 26 C 1.52997 * 117.49669 * 248.62535 * 24 22 21 27 27 C 1.53000 * 117.49604 * 180.02562 * 24 22 21 28 28 F 1.39894 * 117.49876 * 0.02562 * 27 24 22 29 29 F 1.39897 * 117.49410 * 214.97794 * 27 24 22 30 30 H 1.08998 * 109.46969 * 59.99860 * 1 2 3 31 31 H 1.09002 * 109.47491 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46792 * 300.00409 * 1 2 3 33 33 H 1.08997 * 109.46894 * 239.99993 * 2 1 3 34 34 H 1.08998 * 109.46969 * 120.00140 * 2 1 3 35 35 H 1.08992 * 109.47200 * 29.99939 * 4 3 2 36 36 H 1.09001 * 109.47035 * 150.00529 * 4 3 2 37 37 H 0.96999 * 120.00009 * 180.02562 * 8 7 5 38 38 H 1.08996 * 109.46835 * 60.00952 * 15 13 3 39 39 H 1.08993 * 109.47276 * 299.99799 * 15 13 3 40 40 H 1.00901 * 110.99701 * 56.04781 * 16 15 13 41 41 H 1.08996 * 109.46888 * 300.00236 * 19 17 16 42 42 H 1.08995 * 109.46888 * 59.99869 * 19 17 16 43 43 H 1.09004 * 109.46826 * 179.97438 * 19 17 16 44 44 H 1.08998 * 109.47042 * 295.00594 * 20 17 16 45 45 H 1.09000 * 109.47170 * 175.00167 * 20 17 16 46 46 H 0.96998 * 120.00377 * 359.97438 * 21 20 17 47 47 H 1.08999 * 117.49685 * 145.02383 * 26 24 22 48 48 H 1.08999 * 117.52022 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3896 -2.8779 8 7 3.3492 3.1256 -3.6180 9 14 5.9133 2.0954 -3.4175 10 1 6.6006 1.2394 -2.4175 11 1 5.9202 1.4163 -4.7380 12 1 6.6211 3.3963 -3.5262 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9913 1.3062 2.4723 16 7 2.3103 2.2060 3.5889 17 6 2.0758 1.5461 4.8802 18 1 1.2150 0.8825 4.7981 19 6 3.3119 0.7324 5.2689 20 6 1.8040 2.6040 5.9516 21 7 0.6947 3.4594 5.5229 22 6 0.2766 4.4676 6.3136 23 8 0.8190 4.6669 7.3799 24 6 -0.8642 5.3480 5.8723 25 1 -1.6438 4.8527 5.2934 26 6 -0.5401 6.8017 5.5223 27 6 -1.2915 6.4755 6.8140 28 9 -0.5931 6.6107 8.0186 29 9 -2.6532 6.7919 6.8667 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5818 1.6878 -2.0283 36 1 2.0957 3.1411 -1.1383 37 1 3.6750 3.5155 -4.4443 38 1 2.6213 0.4186 2.5302 39 1 0.9433 1.0125 2.5299 40 1 1.7859 3.0654 3.5218 41 1 3.5055 -0.0212 4.5056 42 1 4.1726 1.3959 5.3510 43 1 3.1380 0.2431 6.2274 44 1 2.6968 3.2122 6.0965 45 1 1.5428 2.1129 6.8891 46 1 0.2611 3.3002 4.6699 47 1 -1.1065 7.2628 4.7132 48 1 0.4980 7.1218 5.6115 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001371184961.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:12 Heat of formation + Delta-G solvation = -132.119479 kcal Electronic energy + Delta-G solvation = -30799.356244 eV Core-core repulsion = 26140.550804 eV Total energy + Delta-G solvation = -4658.805440 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -48.99183 -47.63392 -40.31440 -39.26482 -37.54917 -35.97106 -35.33137 -34.23749 -32.84311 -31.31331 -30.14888 -27.79283 -27.32083 -25.60879 -24.19795 -23.08638 -22.90058 -22.35121 -20.96064 -20.67946 -18.80253 -18.40960 -17.59074 -16.86706 -16.67776 -16.44112 -16.35818 -16.11645 -15.89390 -15.58887 -15.28424 -14.80671 -14.53864 -14.27445 -14.24875 -14.01793 -13.92879 -13.71305 -13.46652 -13.15208 -12.95266 -12.89764 -12.81986 -12.77233 -12.21827 -12.08545 -12.00079 -11.78909 -11.64629 -11.62991 -11.23631 -11.17504 -10.93157 -10.77343 -10.62256 -10.57490 -10.22028 -10.15441 -9.64488 -9.49011 -8.97720 -8.51373 -8.46306 -7.71101 -6.07180 -4.11557 1.86976 2.37596 2.65637 2.95631 3.28143 3.32778 3.36735 3.41649 3.59863 3.76868 3.90267 4.16964 4.18326 4.35524 4.43229 4.43744 4.81403 4.94423 4.97531 5.06365 5.09602 5.18595 5.27282 5.28154 5.29958 5.31213 5.48083 5.53387 5.55538 5.60150 5.68821 5.74434 5.92863 5.94301 6.13340 6.15562 6.38305 6.73352 6.97467 7.05298 7.22524 7.39665 7.50936 7.74864 7.89597 8.20577 8.37362 8.87777 9.05734 9.53862 11.00956 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.002224 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.455167 B =12587.809903 C =13241.513788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.503 3.497 14 O -0.528 6.528 15 C 0.040 3.960 16 N -0.667 5.667 17 C 0.074 3.926 18 H 0.051 0.949 19 C -0.139 4.139 20 C 0.117 3.883 21 N -0.723 5.723 22 C 0.544 3.456 23 O -0.518 6.518 24 C -0.199 4.199 25 H 0.150 0.850 26 C -0.144 4.144 27 C 0.229 3.771 28 F -0.139 7.139 29 F -0.156 7.156 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.348 0.652 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.401 0.599 47 H 0.136 0.864 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.292 -2.905 18.139 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.289 3.711 14 O -0.404 6.404 15 C -0.092 4.092 16 N -0.302 5.302 17 C -0.037 4.037 18 H 0.069 0.931 19 C -0.198 4.198 20 C -0.006 4.006 21 N -0.376 5.376 22 C 0.328 3.672 23 O -0.393 6.393 24 C -0.221 4.221 25 H 0.167 0.833 26 C -0.182 4.182 27 C 0.192 3.808 28 F -0.119 7.119 29 F -0.137 7.137 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.169 0.831 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.236 0.764 47 H 0.154 0.846 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.021 -2.177 18.770 21.388 hybrid contribution -0.411 -0.410 -0.819 1.004 sum -10.432 -2.588 17.951 20.923 Atomic orbital electron populations 1.22221 0.96880 1.01399 1.02168 1.21407 0.93387 0.84349 1.02699 1.48262 1.63884 1.13206 1.07726 1.19259 0.96305 0.93569 0.78060 1.21468 0.96912 1.31780 1.06168 0.92429 1.24934 0.97855 0.94923 0.96417 1.69937 1.35614 1.33566 1.14339 0.86448 0.84654 0.78093 0.78269 1.19790 1.21008 1.20861 1.20155 0.78990 0.87149 0.84850 1.90681 1.44857 1.17975 1.86897 1.21997 0.99822 0.96912 0.90512 1.60144 1.63420 1.06901 0.99766 1.21814 0.98257 0.94688 0.88900 0.93144 1.21748 0.97387 0.99799 1.00832 1.21675 0.89630 0.91980 0.97300 1.45912 1.36577 1.32317 1.22815 1.19181 0.83155 0.80488 0.84349 1.90810 1.56499 1.69985 1.22030 1.23649 1.01599 0.93303 1.03547 0.83277 1.24315 1.04104 0.93599 0.96229 1.19460 0.76069 1.03399 0.81883 1.93130 1.76907 1.96002 1.45829 1.93057 1.30557 1.93246 1.96805 0.91984 0.92169 0.93335 0.89885 0.91869 0.95076 0.93957 0.92786 0.88480 0.92977 0.83089 0.91944 0.91293 0.92252 0.89910 0.90409 0.76428 0.84561 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.16 0.38 -1.61 16 2 C 0.11 1.54 5.93 -4.04 -0.02 1.52 16 3 N -0.60 -11.76 2.46 -175.06 -0.43 -12.19 16 4 C 0.25 6.21 5.16 -5.19 -0.03 6.19 16 5 C -0.52 -14.56 9.39 -34.44 -0.32 -14.88 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 9 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 C 0.50 9.62 7.71 -10.98 -0.08 9.54 16 14 O -0.53 -12.54 15.78 5.56 0.09 -12.45 16 15 C 0.04 0.52 4.52 -4.97 -0.02 0.49 16 16 N -0.67 -8.17 5.93 -107.98 -0.64 -8.81 16 17 C 0.07 0.65 2.81 -67.71 -0.19 0.46 16 18 H 0.05 0.38 7.80 -51.92 -0.40 -0.02 16 19 C -0.14 -1.20 9.42 37.16 0.35 -0.85 16 20 C 0.12 1.06 5.31 -4.05 -0.02 1.04 16 21 N -0.72 -6.18 4.99 -60.30 -0.30 -6.48 16 22 C 0.54 5.62 7.61 -10.98 -0.08 5.53 16 23 O -0.52 -7.36 15.14 5.56 0.08 -7.28 16 24 C -0.20 -1.53 6.18 -91.77 -0.57 -2.10 16 25 H 0.15 0.72 8.14 -51.93 -0.42 0.30 16 26 C -0.14 -0.98 10.20 -26.75 -0.27 -1.26 16 27 C 0.23 2.16 5.19 -26.75 -0.14 2.02 16 28 F -0.14 -1.73 15.71 2.25 0.04 -1.70 16 29 F -0.16 -1.50 17.60 2.25 0.04 -1.46 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.52 7.22 -51.93 -0.37 0.15 16 33 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 34 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 35 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 36 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.10 1.18 6.69 -51.93 -0.35 0.83 16 39 H 0.05 0.54 7.10 -51.93 -0.37 0.17 16 40 H 0.35 4.32 6.41 -39.29 -0.25 4.07 16 41 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.40 2.74 7.37 -40.82 -0.30 2.44 16 47 H 0.14 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 406.31 15.07 6.12 6.12 Total: -1.00 -35.60 406.31 -7.75 -43.35 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.34 Total: 2.02 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.12 Total: 7.69 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.63 Total: -52.93 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.17 Total: -19.73 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.16 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.60 -7.75 -43.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371184961.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.769 kcal (2) G-P(sol) polarization free energy of solvation -35.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds