Wall clock time and date at job start Wed Apr 1 2020 04:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47229 * 2 1 4 4 C 1.46499 * 120.00075 * 270.00123 * 3 2 1 5 5 C 1.50703 * 109.46932 * 269.99888 * 4 3 2 6 6 H 1.08003 * 119.99966 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00246 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99533 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00242 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46949 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46868 * 120.00310 * 9 7 5 12 12 H 1.48499 * 109.47045 * 240.00269 * 9 7 5 13 13 C 1.34777 * 120.00094 * 90.00205 * 3 2 1 14 14 O 1.21272 * 120.00239 * 180.02562 * 13 3 2 15 15 C 1.50707 * 119.99544 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.46733 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99953 * 179.97438 * 16 15 13 18 18 H 1.09007 * 109.47209 * 325.00624 * 17 16 15 19 19 C 1.53008 * 109.46818 * 85.00184 * 17 16 15 20 20 C 1.52998 * 109.47340 * 205.00137 * 17 16 15 21 21 N 1.46495 * 109.46945 * 55.00185 * 20 17 16 22 22 C 1.34783 * 120.00138 * 179.97438 * 21 20 17 23 23 O 1.21280 * 119.99508 * 0.02562 * 22 21 20 24 24 C 1.50702 * 120.00171 * 179.97438 * 22 21 20 25 25 H 1.09002 * 115.56044 * 34.30916 * 24 22 21 26 26 C 1.52997 * 117.49669 * 248.62535 * 24 22 21 27 27 C 1.53000 * 117.49604 * 180.02562 * 24 22 21 28 28 F 1.39894 * 117.49876 * 0.02562 * 27 24 22 29 29 F 1.39897 * 117.49410 * 214.97794 * 27 24 22 30 30 H 1.08998 * 109.46969 * 59.99860 * 1 2 3 31 31 H 1.09002 * 109.47491 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46792 * 300.00409 * 1 2 3 33 33 H 1.08997 * 109.46894 * 239.99993 * 2 1 3 34 34 H 1.08998 * 109.46969 * 120.00140 * 2 1 3 35 35 H 1.08992 * 109.47200 * 29.99939 * 4 3 2 36 36 H 1.09001 * 109.47035 * 150.00529 * 4 3 2 37 37 H 0.96999 * 120.00009 * 180.02562 * 8 7 5 38 38 H 1.08996 * 109.46835 * 60.00952 * 15 13 3 39 39 H 1.08993 * 109.47276 * 299.99799 * 15 13 3 40 40 H 1.00901 * 110.99701 * 56.04781 * 16 15 13 41 41 H 1.08996 * 109.46888 * 300.00236 * 19 17 16 42 42 H 1.08995 * 109.46888 * 59.99869 * 19 17 16 43 43 H 1.09004 * 109.46826 * 179.97438 * 19 17 16 44 44 H 1.08998 * 109.47042 * 295.00594 * 20 17 16 45 45 H 1.09000 * 109.47170 * 175.00167 * 20 17 16 46 46 H 0.96998 * 120.00377 * 359.97438 * 21 20 17 47 47 H 1.08999 * 117.49685 * 145.02383 * 26 24 22 48 48 H 1.08999 * 117.52022 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3896 -2.8779 8 7 3.3492 3.1256 -3.6180 9 14 5.9133 2.0954 -3.4175 10 1 6.6006 1.2394 -2.4175 11 1 5.9202 1.4163 -4.7380 12 1 6.6211 3.3963 -3.5262 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9913 1.3062 2.4723 16 7 2.3103 2.2060 3.5889 17 6 2.0758 1.5461 4.8802 18 1 1.2150 0.8825 4.7981 19 6 3.3119 0.7324 5.2689 20 6 1.8040 2.6040 5.9516 21 7 0.6947 3.4594 5.5229 22 6 0.2766 4.4676 6.3136 23 8 0.8190 4.6669 7.3799 24 6 -0.8642 5.3480 5.8723 25 1 -1.6438 4.8527 5.2934 26 6 -0.5401 6.8017 5.5223 27 6 -1.2915 6.4755 6.8140 28 9 -0.5931 6.6107 8.0186 29 9 -2.6532 6.7919 6.8667 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5818 1.6878 -2.0283 36 1 2.0957 3.1411 -1.1383 37 1 3.6750 3.5155 -4.4443 38 1 2.6213 0.4186 2.5302 39 1 0.9433 1.0125 2.5299 40 1 1.7859 3.0654 3.5218 41 1 3.5055 -0.0212 4.5056 42 1 4.1726 1.3959 5.3510 43 1 3.1380 0.2431 6.2274 44 1 2.6968 3.2122 6.0965 45 1 1.5428 2.1129 6.8891 46 1 0.2611 3.3002 4.6699 47 1 -1.1065 7.2628 4.7132 48 1 0.4980 7.1218 5.6115 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001371184961.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:06 Heat of formation + Delta-G solvation = -158.214502 kcal Electronic energy + Delta-G solvation = -30800.487809 eV Core-core repulsion = 26140.550804 eV Total energy + Delta-G solvation = -4659.937005 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -49.73515 -48.41275 -41.14451 -40.65755 -38.44794 -36.88383 -36.64838 -35.17800 -34.81250 -32.28157 -31.49784 -29.38691 -28.09800 -26.99550 -24.96649 -24.57137 -23.80378 -23.55674 -21.73634 -21.41435 -19.96753 -19.38447 -18.64541 -18.36190 -17.81342 -17.59082 -17.33660 -17.09848 -16.93499 -16.61331 -16.37667 -16.12124 -15.76588 -15.50929 -15.05983 -14.97995 -14.70282 -14.65637 -14.49532 -14.45672 -14.24193 -13.76033 -13.63264 -13.59951 -13.52685 -13.32621 -13.15359 -13.07687 -12.86225 -12.67959 -12.56357 -12.44712 -12.32317 -12.15360 -11.96831 -11.76466 -11.66080 -11.32175 -10.99766 -10.63506 -10.50606 -10.26107 -9.45475 -9.32611 -8.21174 -6.35167 1.12859 1.36355 1.39038 1.50309 1.68187 1.90450 2.01292 2.26434 2.28894 2.42812 3.08318 3.12673 3.17531 3.29917 3.48762 3.66671 3.75711 3.80189 4.14437 4.16296 4.30508 4.34907 4.44635 4.48845 4.51689 4.55600 4.60752 4.68894 4.72341 4.81154 4.89354 5.00201 5.03450 5.05179 5.09788 5.21808 5.25552 5.42878 5.45596 5.60797 5.86710 5.98435 6.09445 6.27933 6.31661 6.73703 6.88214 7.00903 7.31364 7.56920 8.85616 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.002224 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.455167 B =12587.809903 C =13241.513788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.964 3.036 10 H -0.268 1.268 11 H -0.270 1.270 12 H -0.283 1.283 13 C 0.493 3.507 14 O -0.586 6.586 15 C 0.058 3.942 16 N -0.689 5.689 17 C 0.083 3.917 18 H 0.079 0.921 19 C -0.140 4.140 20 C 0.120 3.880 21 N -0.711 5.711 22 C 0.539 3.461 23 O -0.564 6.564 24 C -0.189 4.189 25 H 0.184 0.816 26 C -0.126 4.126 27 C 0.201 3.799 28 F -0.164 7.164 29 F -0.160 7.160 30 H 0.036 0.964 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.021 0.979 36 H -0.003 1.003 37 H 0.266 0.734 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.345 0.655 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.412 0.588 47 H 0.166 0.834 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 -5.298 18.509 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.142 3.858 5 C -0.577 4.577 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.192 1.192 11 H -0.195 1.195 12 H -0.209 1.209 13 C 0.281 3.719 14 O -0.466 6.466 15 C -0.074 4.074 16 N -0.325 5.325 17 C -0.026 4.026 18 H 0.097 0.903 19 C -0.198 4.198 20 C -0.003 4.003 21 N -0.364 5.364 22 C 0.325 3.675 23 O -0.442 6.442 24 C -0.211 4.211 25 H 0.201 0.799 26 C -0.164 4.164 27 C 0.164 3.836 28 F -0.144 7.144 29 F -0.140 7.140 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.039 0.961 36 H 0.015 0.985 37 H 0.075 0.925 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.166 0.834 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.249 0.751 47 H 0.184 0.816 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.748 -4.641 19.132 22.430 hybrid contribution -0.205 0.326 -0.925 1.002 sum -10.954 -4.315 18.207 21.682 Atomic orbital electron populations 1.22148 0.94423 1.03441 1.01776 1.21744 0.95377 0.81400 1.03845 1.48275 1.64071 1.15078 1.06195 1.18657 0.94988 0.91570 0.80625 1.21748 0.98053 1.31645 1.06296 0.93077 1.25818 1.02130 0.94611 0.96566 1.70047 1.37576 1.34384 1.14818 0.85421 0.79382 0.77953 0.78379 1.19204 1.19476 1.20918 1.21304 0.77359 0.86709 0.86490 1.90648 1.47335 1.20748 1.87884 1.21893 1.02431 0.96236 0.86829 1.60113 1.64292 1.07176 1.00897 1.21825 0.99383 0.94551 0.86845 0.90296 1.21772 0.96554 0.99442 1.02052 1.21621 0.88962 0.91819 0.97927 1.45835 1.36066 1.31593 1.22914 1.19628 0.83388 0.80711 0.83823 1.90794 1.58153 1.71224 1.24068 1.23756 1.01284 0.93294 1.02736 0.79867 1.24466 1.03857 0.92883 0.95169 1.19846 0.76076 1.05873 0.81787 1.93069 1.77511 1.96301 1.47557 1.93041 1.30739 1.93433 1.96796 0.94483 0.88819 0.91667 0.91415 0.88060 0.96133 0.98485 0.92488 0.86781 0.89024 0.83433 0.91839 0.93216 0.90122 0.92122 0.89555 0.75099 0.81608 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 10.24 71.98 0.74 -2.55 16 2 C 0.10 2.65 5.93 86.38 0.51 3.16 16 3 N -0.60 -23.57 2.46 -826.17 -2.03 -25.60 16 4 C 0.26 13.72 5.16 85.63 0.44 14.16 16 5 C -0.54 -30.56 9.39 25.60 0.24 -30.32 16 6 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.43 5.46 84.66 0.46 0.89 16 8 N -0.93 -55.51 13.29 21.45 0.28 -55.23 16 9 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 C 0.49 18.49 7.71 87.66 0.68 19.17 16 14 O -0.59 -28.52 15.78 -3.01 -0.05 -28.57 16 15 C 0.06 1.31 4.52 85.56 0.39 1.69 16 16 N -0.69 -15.36 5.93 -495.55 -2.94 -18.30 16 17 C 0.08 1.22 2.81 44.92 0.13 1.34 16 18 H 0.08 0.78 7.80 -2.38 -0.02 0.76 16 19 C -0.14 -2.04 9.42 71.98 0.68 -1.36 16 20 C 0.12 1.97 5.31 86.38 0.46 2.43 16 21 N -0.71 -10.88 4.99 -463.07 -2.31 -13.19 16 22 C 0.54 10.65 7.61 87.66 0.67 11.32 16 23 O -0.56 -16.25 15.14 -3.03 -0.05 -16.29 16 24 C -0.19 -2.60 6.18 -11.54 -0.07 -2.67 16 25 H 0.18 1.17 8.14 -2.39 -0.02 1.15 16 26 C -0.13 -1.54 10.20 30.58 0.31 -1.23 16 27 C 0.20 3.69 5.19 30.58 0.16 3.85 16 28 F -0.16 -4.26 15.71 44.97 0.71 -3.56 16 29 F -0.16 -2.96 17.60 44.97 0.79 -2.17 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.13 7.22 -2.39 -0.02 1.11 16 33 H 0.07 2.02 8.07 -2.39 -0.02 2.00 16 34 H 0.10 1.96 6.44 -2.39 -0.02 1.94 16 35 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 36 H 0.00 -0.18 7.42 -2.39 -0.02 -0.20 16 37 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.11 2.26 6.69 -2.39 -0.02 2.24 16 39 H 0.09 1.39 7.10 -2.39 -0.02 1.38 16 40 H 0.34 8.02 6.41 -89.69 -0.57 7.44 16 41 H 0.06 0.92 7.45 -2.39 -0.02 0.91 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.41 4.50 7.37 -92.71 -0.68 3.82 16 47 H 0.17 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -83.25 406.31 1.96 -81.29 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -0.26 Total: 15.02 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 5.79 Total: 19.89 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -6.99 Total: -112.32 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -0.09 Total: -44.86 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 1.50 Total: -5.72 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -83.25 1.96 -81.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371184961.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.921 kcal (2) G-P(sol) polarization free energy of solvation -83.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds