Wall clock time and date at job start Wed Apr 1 2020 04:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47206 * 2 1 4 4 C 1.46496 * 120.00058 * 89.99579 * 3 2 1 5 5 C 1.50706 * 109.47106 * 89.99968 * 4 3 2 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 119.99848 * 9 7 5 12 12 H 1.48501 * 109.47057 * 239.99829 * 9 7 5 13 13 C 1.34779 * 119.99726 * 269.99761 * 3 2 1 14 14 O 1.21283 * 119.99426 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99936 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46543 * 179.97438 * 15 13 3 17 17 C 1.46903 * 110.99836 * 180.02562 * 16 15 13 18 18 C 1.52992 * 109.47224 * 180.02562 * 17 16 15 19 19 H 1.08999 * 110.88756 * 57.42227 * 18 17 16 20 20 C 1.55164 * 111.00552 * 181.34686 * 18 17 16 21 21 C 1.54319 * 102.94158 * 153.57255 * 20 18 17 22 22 N 1.47017 * 107.27592 * 337.81091 * 21 20 18 23 23 C 1.34775 * 125.65343 * 178.97556 * 22 21 20 24 24 O 1.21273 * 120.00219 * 179.97438 * 23 22 21 25 25 C 1.50703 * 119.99672 * 359.95777 * 23 22 21 26 26 F 1.39897 * 109.47021 * 184.99613 * 25 23 22 27 27 F 1.39900 * 109.46966 * 304.99765 * 25 23 22 28 28 C 1.47431 * 108.70223 * 358.93931 * 22 21 20 29 29 H 1.09000 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47382 * 300.00011 * 1 2 3 31 31 H 1.09000 * 109.46892 * 59.99987 * 1 2 3 32 32 H 1.09002 * 109.47228 * 239.99692 * 2 1 3 33 33 H 1.09000 * 109.46892 * 120.00013 * 2 1 3 34 34 H 1.09001 * 109.47001 * 330.00259 * 4 3 2 35 35 H 1.09000 * 109.47574 * 210.00475 * 4 3 2 36 36 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.47466 * 299.99727 * 15 13 3 38 38 H 1.09004 * 109.47173 * 60.00207 * 15 13 3 39 39 H 1.00896 * 111.00251 * 303.94989 * 16 15 13 40 40 H 1.09009 * 109.46863 * 300.00001 * 17 16 15 41 41 H 1.09001 * 109.47337 * 59.99363 * 17 16 15 42 42 H 1.09004 * 110.71811 * 271.94287 * 20 18 17 43 43 H 1.09003 * 110.71576 * 35.20714 * 20 18 17 44 44 H 1.08998 * 109.88267 * 218.39054 * 21 20 18 45 45 H 1.09001 * 110.00881 * 97.29868 * 21 20 18 46 46 H 1.09007 * 109.47372 * 64.99974 * 25 23 22 47 47 H 1.09002 * 110.36480 * 265.29351 * 28 22 21 48 48 H 1.08993 * 110.45943 * 143.01750 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0719 1.2687 5 6 3.6857 1.8350 1.7038 6 1 4.3428 1.2309 1.0958 7 6 4.1490 2.3896 2.8780 8 7 3.3486 3.1249 3.6186 9 14 5.9134 2.0966 3.4170 10 1 6.6011 1.2414 2.4166 11 1 6.6204 3.3980 3.5258 12 1 5.9213 1.4171 4.7373 13 6 2.2430 2.0165 -1.1673 14 8 2.6469 3.1601 -1.1672 15 6 1.9913 1.3062 -2.4723 16 7 2.3091 2.2064 -3.5888 17 6 2.0746 1.5466 -4.8802 18 6 2.4164 2.5127 -6.0161 19 1 3.4483 2.8552 -5.9378 20 6 2.1490 1.8621 -7.3991 21 6 1.8741 3.0796 -8.3066 22 7 1.4562 4.1878 -7.4355 23 6 1.1441 5.4336 -7.8442 24 8 0.8104 6.2719 -7.0339 25 6 1.2103 5.7850 -9.3082 26 9 0.9558 7.1508 -9.4719 27 9 2.4842 5.4853 -9.8026 28 6 1.4343 3.7105 -6.0408 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5816 1.6877 2.0283 35 1 2.0954 3.1411 1.1384 36 1 3.6747 3.5154 4.4445 37 1 2.6211 0.4185 -2.5302 38 1 0.9432 1.0125 -2.5299 39 1 1.7841 3.0654 -3.5215 40 1 2.7051 0.6605 -4.9552 41 1 1.0271 1.2544 -4.9540 42 1 3.0262 1.3144 -7.7437 43 1 1.2776 1.2087 -7.3558 44 1 1.0785 2.8433 -9.0131 45 1 2.7800 3.3542 -8.8469 46 1 0.4637 5.2083 -9.8544 47 1 0.4310 3.3839 -5.7673 48 1 1.7749 4.4943 -5.3644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001371558561.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:08 Heat of formation + Delta-G solvation = -162.387653 kcal Electronic energy + Delta-G solvation = -30569.974630 eV Core-core repulsion = 25909.856663 eV Total energy + Delta-G solvation = -4660.117967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -49.62265 -47.64794 -40.52100 -39.16225 -38.24247 -35.84975 -35.13082 -32.87610 -32.46985 -30.13974 -29.94762 -29.05339 -27.68938 -26.14402 -24.65309 -23.14939 -22.98265 -22.08880 -20.94852 -20.44018 -18.73149 -18.31739 -18.22001 -17.71568 -17.08459 -16.44638 -16.33562 -16.20201 -15.91296 -15.44600 -14.82184 -14.53258 -14.45791 -14.36127 -14.27572 -14.03570 -13.97867 -13.91558 -13.62076 -13.39548 -13.14590 -12.88176 -12.83337 -12.57268 -12.54130 -12.36809 -12.03079 -11.74755 -11.60323 -11.50907 -11.22427 -11.18340 -11.12427 -10.88685 -10.72837 -10.52784 -10.40276 -10.11059 -9.59604 -9.26722 -8.91655 -8.42122 -8.41432 -7.64563 -6.02459 -4.06834 1.68162 2.01245 3.20327 3.31303 3.38211 3.40707 3.42429 3.46376 3.65940 3.97708 4.04556 4.09729 4.16115 4.30550 4.46067 4.51136 4.74682 4.85649 4.93212 5.02534 5.10194 5.21262 5.25582 5.31216 5.32283 5.35584 5.40386 5.45282 5.56456 5.57526 5.63358 5.66714 5.75276 5.90887 5.99139 6.20891 6.44368 6.73725 6.79398 7.11647 7.29163 7.32605 7.46448 7.57194 7.94446 8.25728 8.44173 8.93110 9.12823 9.58365 11.05683 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.001950 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.368128 B =14353.260663 C =15056.770692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.042 3.958 16 N -0.674 5.674 17 C 0.072 3.928 18 C -0.098 4.098 19 H 0.101 0.899 20 C -0.124 4.124 21 C 0.089 3.911 22 N -0.604 5.604 23 C 0.484 3.516 24 O -0.497 6.497 25 C 0.263 3.737 26 F -0.175 7.175 27 F -0.187 7.187 28 C 0.105 3.895 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.350 0.650 40 H 0.081 0.919 41 H 0.032 0.968 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.135 0.865 47 H 0.073 0.927 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.052 -7.559 -27.937 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.288 3.712 14 O -0.403 6.403 15 C -0.090 4.090 16 N -0.307 5.307 17 C -0.057 4.057 18 C -0.118 4.118 19 H 0.119 0.881 20 C -0.163 4.163 21 C -0.034 4.034 22 N -0.339 5.339 23 C 0.267 3.733 24 O -0.370 6.370 25 C 0.206 3.794 26 F -0.156 7.156 27 F -0.168 7.168 28 C -0.017 4.017 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.170 0.830 40 H 0.099 0.901 41 H 0.051 0.949 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.152 0.848 47 H 0.091 0.909 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.354 -6.403 -27.326 29.013 hybrid contribution 0.052 -0.203 0.294 0.361 sum -7.301 -6.606 -27.032 28.769 Atomic orbital electron populations 1.22224 0.96927 1.01332 1.02234 1.21397 0.93362 0.84365 1.02632 1.48257 1.63994 1.13212 1.07729 1.19259 0.96270 0.93623 0.78088 1.21471 0.96919 1.31752 1.06104 0.92424 1.24944 0.97855 0.94965 0.96448 1.69947 1.35577 1.33591 1.14342 0.86443 0.84684 0.78067 0.78225 1.19806 1.20872 1.21032 1.20178 0.78954 0.87153 0.84889 1.90688 1.44809 1.17950 1.86902 1.21900 0.99890 0.96697 0.90545 1.60088 1.63253 1.07229 1.00086 1.21888 0.99076 0.96725 0.88053 1.22435 1.00913 0.94547 0.93869 0.88119 1.22677 1.03252 0.96222 0.94119 1.22324 1.00816 0.86553 0.93672 1.48412 1.65935 1.09654 1.09935 1.20696 0.79852 0.82099 0.90609 1.90865 1.45379 1.47074 1.53687 1.21552 0.83999 0.80510 0.93357 1.93074 1.93952 1.32670 1.95873 1.93044 1.42144 1.92887 1.88718 1.22492 0.99835 0.97352 0.81989 0.92212 0.92007 0.93284 0.91870 0.89931 0.95081 0.93947 0.92807 0.88631 0.92987 0.82974 0.90084 0.94950 0.89138 0.90044 0.90848 0.89951 0.84766 0.90881 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.63 5.93 -4.04 -0.02 1.61 16 3 N -0.60 -12.38 2.46 -175.06 -0.43 -12.81 16 4 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 5 C -0.52 -14.92 9.39 -34.44 -0.32 -15.24 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 9 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.50 10.21 7.71 -10.99 -0.08 10.12 16 14 O -0.53 -13.27 15.78 5.55 0.09 -13.18 16 15 C 0.04 0.58 4.72 -4.97 -0.02 0.56 16 16 N -0.67 -8.77 6.13 -115.05 -0.70 -9.47 16 17 C 0.07 0.60 5.19 -3.83 -0.02 0.58 16 18 C -0.10 -0.73 3.29 -88.47 -0.29 -1.02 16 19 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 20 C -0.12 -0.53 6.42 -24.90 -0.16 -0.69 16 21 C 0.09 0.42 6.21 -3.07 -0.02 0.40 16 22 N -0.60 -5.03 3.33 -170.53 -0.57 -5.60 16 23 C 0.48 5.02 7.68 -10.98 -0.08 4.94 16 24 O -0.50 -7.49 16.88 5.56 0.09 -7.39 16 25 C 0.26 1.91 5.17 36.01 0.19 2.09 16 26 F -0.17 -1.78 16.95 2.25 0.04 -1.74 16 27 F -0.19 -1.44 15.84 2.25 0.04 -1.40 16 28 C 0.10 0.95 5.60 -2.53 -0.01 0.94 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.58 7.22 -51.93 -0.37 0.21 16 32 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 33 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.10 1.20 7.40 -51.93 -0.38 0.81 16 38 H 0.05 0.60 7.18 -51.93 -0.37 0.23 16 39 H 0.35 4.87 7.59 -39.29 -0.30 4.57 16 40 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.03 0.23 8.10 -51.93 -0.42 -0.19 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.27 8.04 -51.93 -0.42 -0.15 16 44 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.08 0.37 7.15 -51.93 -0.37 0.00 16 46 H 0.14 0.34 8.14 -51.92 -0.42 -0.08 16 47 H 0.07 0.62 8.00 -51.93 -0.42 0.20 16 48 H 0.09 1.06 7.94 -51.93 -0.41 0.65 16 LS Contribution 401.42 15.07 6.05 6.05 Total: -1.00 -37.27 401.42 -7.81 -45.08 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.53 Total: -1.07 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -0.60 Total: 10.57 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.97 Total: -53.99 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.18 Total: -20.57 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.07 Total: -3.14 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.27 -7.81 -45.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371558561.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.307 kcal (2) G-P(sol) polarization free energy of solvation -37.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds