Wall clock time and date at job start Wed Apr 1 2020 04:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47206 * 2 1 4 4 C 1.46496 * 120.00058 * 89.99579 * 3 2 1 5 5 C 1.50706 * 109.47106 * 89.99968 * 4 3 2 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 119.99848 * 9 7 5 12 12 H 1.48501 * 109.47057 * 239.99829 * 9 7 5 13 13 C 1.34779 * 119.99726 * 269.99761 * 3 2 1 14 14 O 1.21283 * 119.99426 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99936 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46543 * 179.97438 * 15 13 3 17 17 C 1.46903 * 110.99836 * 180.02562 * 16 15 13 18 18 C 1.52992 * 109.47224 * 180.02562 * 17 16 15 19 19 H 1.08999 * 110.88756 * 57.42227 * 18 17 16 20 20 C 1.55164 * 111.00552 * 181.34686 * 18 17 16 21 21 C 1.54319 * 102.94158 * 153.57255 * 20 18 17 22 22 N 1.47017 * 107.27592 * 337.81091 * 21 20 18 23 23 C 1.34775 * 125.65343 * 178.97556 * 22 21 20 24 24 O 1.21273 * 120.00219 * 179.97438 * 23 22 21 25 25 C 1.50703 * 119.99672 * 359.95777 * 23 22 21 26 26 F 1.39897 * 109.47021 * 184.99613 * 25 23 22 27 27 F 1.39900 * 109.46966 * 304.99765 * 25 23 22 28 28 C 1.47431 * 108.70223 * 358.93931 * 22 21 20 29 29 H 1.09000 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47382 * 300.00011 * 1 2 3 31 31 H 1.09000 * 109.46892 * 59.99987 * 1 2 3 32 32 H 1.09002 * 109.47228 * 239.99692 * 2 1 3 33 33 H 1.09000 * 109.46892 * 120.00013 * 2 1 3 34 34 H 1.09001 * 109.47001 * 330.00259 * 4 3 2 35 35 H 1.09000 * 109.47574 * 210.00475 * 4 3 2 36 36 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.47466 * 299.99727 * 15 13 3 38 38 H 1.09004 * 109.47173 * 60.00207 * 15 13 3 39 39 H 1.00896 * 111.00251 * 303.94989 * 16 15 13 40 40 H 1.09009 * 109.46863 * 300.00001 * 17 16 15 41 41 H 1.09001 * 109.47337 * 59.99363 * 17 16 15 42 42 H 1.09004 * 110.71811 * 271.94287 * 20 18 17 43 43 H 1.09003 * 110.71576 * 35.20714 * 20 18 17 44 44 H 1.08998 * 109.88267 * 218.39054 * 21 20 18 45 45 H 1.09001 * 110.00881 * 97.29868 * 21 20 18 46 46 H 1.09007 * 109.47372 * 64.99974 * 25 23 22 47 47 H 1.09002 * 110.36480 * 265.29351 * 28 22 21 48 48 H 1.08993 * 110.45943 * 143.01750 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0719 1.2687 5 6 3.6857 1.8350 1.7038 6 1 4.3428 1.2309 1.0958 7 6 4.1490 2.3896 2.8780 8 7 3.3486 3.1249 3.6186 9 14 5.9134 2.0966 3.4170 10 1 6.6011 1.2414 2.4166 11 1 6.6204 3.3980 3.5258 12 1 5.9213 1.4171 4.7373 13 6 2.2430 2.0165 -1.1673 14 8 2.6469 3.1601 -1.1672 15 6 1.9913 1.3062 -2.4723 16 7 2.3091 2.2064 -3.5888 17 6 2.0746 1.5466 -4.8802 18 6 2.4164 2.5127 -6.0161 19 1 3.4483 2.8552 -5.9378 20 6 2.1490 1.8621 -7.3991 21 6 1.8741 3.0796 -8.3066 22 7 1.4562 4.1878 -7.4355 23 6 1.1441 5.4336 -7.8442 24 8 0.8104 6.2719 -7.0339 25 6 1.2103 5.7850 -9.3082 26 9 0.9558 7.1508 -9.4719 27 9 2.4842 5.4853 -9.8026 28 6 1.4343 3.7105 -6.0408 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5816 1.6877 2.0283 35 1 2.0954 3.1411 1.1384 36 1 3.6747 3.5154 4.4445 37 1 2.6211 0.4185 -2.5302 38 1 0.9432 1.0125 -2.5299 39 1 1.7841 3.0654 -3.5215 40 1 2.7051 0.6605 -4.9552 41 1 1.0271 1.2544 -4.9540 42 1 3.0262 1.3144 -7.7437 43 1 1.2776 1.2087 -7.3558 44 1 1.0785 2.8433 -9.0131 45 1 2.7800 3.3542 -8.8469 46 1 0.4637 5.2083 -9.8544 47 1 0.4310 3.3839 -5.7673 48 1 1.7749 4.4943 -5.3644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001371558561.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:03 Heat of formation + Delta-G solvation = -190.589751 kcal Electronic energy + Delta-G solvation = -30571.197565 eV Core-core repulsion = 25909.856663 eV Total energy + Delta-G solvation = -4661.340902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.24782 -48.29095 -41.23016 -40.69132 -39.03768 -37.07665 -36.48178 -34.90636 -33.33863 -31.61659 -30.58992 -29.92471 -29.10107 -27.40107 -25.64249 -24.62949 -23.96928 -23.30784 -21.54689 -21.09882 -19.91781 -19.25014 -18.82640 -18.65068 -18.37456 -18.05553 -17.55802 -17.08537 -17.04511 -16.65680 -16.19748 -15.93253 -15.36884 -15.17988 -15.08509 -14.93684 -14.82000 -14.65876 -14.62489 -14.44745 -14.26558 -14.06529 -13.85910 -13.67187 -13.38810 -13.26672 -13.22015 -13.10313 -13.06519 -12.73330 -12.68681 -12.48855 -12.17551 -12.07455 -11.87234 -11.83651 -11.68570 -11.60835 -11.17599 -10.65957 -10.54222 -9.93431 -9.45616 -9.31361 -8.23094 -6.37836 0.92278 1.34654 1.37258 1.37825 1.49414 1.88079 2.27156 2.41757 2.66893 2.91933 3.06200 3.18261 3.45592 3.53682 3.61855 3.69830 3.75579 3.92443 4.13388 4.23451 4.29570 4.37554 4.38662 4.46434 4.49629 4.58856 4.65558 4.69857 4.78820 4.89074 4.90926 4.93869 5.00164 5.02480 5.06033 5.19539 5.21910 5.37311 5.39968 5.58343 5.85176 5.99567 6.06667 6.09855 6.30335 6.58028 6.71151 6.85305 7.28780 7.54454 8.84053 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.001950 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.368128 B =14353.260663 C =15056.770692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.539 4.539 6 H 0.053 0.947 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.489 3.511 14 O -0.591 6.591 15 C 0.061 3.939 16 N -0.700 5.700 17 C 0.076 3.924 18 C -0.093 4.093 19 H 0.079 0.921 20 C -0.111 4.111 21 C 0.080 3.920 22 N -0.600 5.600 23 C 0.472 3.528 24 O -0.562 6.562 25 C 0.269 3.731 26 F -0.195 7.195 27 F -0.188 7.188 28 C 0.101 3.899 29 H 0.097 0.903 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.021 0.979 35 H -0.008 1.008 36 H 0.266 0.734 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.340 0.660 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.086 0.914 46 H 0.195 0.805 47 H 0.081 0.919 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.136 -11.488 -30.903 33.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.195 4.195 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.278 3.722 14 O -0.471 6.471 15 C -0.071 4.071 16 N -0.332 5.332 17 C -0.053 4.053 18 C -0.113 4.113 19 H 0.097 0.903 20 C -0.149 4.149 21 C -0.040 4.040 22 N -0.332 5.332 23 C 0.257 3.743 24 O -0.440 6.440 25 C 0.213 3.787 26 F -0.176 7.176 27 F -0.169 7.169 28 C -0.021 4.021 29 H 0.115 0.885 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.010 0.990 36 H 0.075 0.925 37 H 0.138 0.862 38 H 0.104 0.896 39 H 0.158 0.842 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.105 0.895 46 H 0.211 0.789 47 H 0.099 0.901 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.443 -10.442 -30.342 32.941 hybrid contribution 0.067 0.996 1.221 1.577 sum -7.376 -9.446 -29.122 31.491 Atomic orbital electron populations 1.22153 0.94660 1.03507 1.01526 1.21758 0.95198 0.81247 1.04057 1.48298 1.64074 1.15217 1.06138 1.18663 0.95248 0.91360 0.80676 1.21742 0.97896 1.31769 1.06315 0.92847 1.25898 1.02485 0.94548 0.96540 1.70070 1.37720 1.34405 1.14841 0.85352 0.78948 0.77960 0.78453 1.18967 1.20982 1.19274 1.21457 0.77278 0.86707 0.86757 1.90652 1.47563 1.20957 1.87975 1.21804 1.02322 0.96204 0.86768 1.60102 1.63949 1.07304 1.01866 1.22009 1.00862 0.96798 0.85600 1.22340 0.99003 0.93961 0.95979 0.90282 1.22705 1.05016 0.96043 0.91128 1.22687 1.02315 0.85275 0.93751 1.48577 1.64327 1.10045 1.10282 1.21421 0.79021 0.82038 0.91818 1.90830 1.48553 1.48991 1.55651 1.21911 0.85165 0.80012 0.91635 1.93031 1.94096 1.34667 1.95785 1.93040 1.42695 1.92771 1.88401 1.22463 1.00669 0.96951 0.82064 0.88473 0.94676 0.92095 0.87732 0.91176 0.96114 0.99002 0.92474 0.86177 0.89576 0.84196 0.88396 0.92567 0.87306 0.87885 0.87284 0.89533 0.78870 0.90062 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 10.24 71.98 0.74 -2.97 16 2 C 0.10 2.87 5.93 86.38 0.51 3.39 16 3 N -0.61 -25.47 2.46 -826.14 -2.03 -27.49 16 4 C 0.26 14.46 5.16 85.64 0.44 14.90 16 5 C -0.54 -31.72 9.39 25.60 0.24 -31.48 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.00 0.23 5.46 84.65 0.46 0.69 16 8 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 9 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.49 20.20 7.71 87.66 0.68 20.88 16 14 O -0.59 -31.55 15.78 -3.04 -0.05 -31.59 16 15 C 0.06 1.55 4.72 85.56 0.40 1.95 16 16 N -0.70 -17.57 6.13 -517.92 -3.17 -20.74 16 17 C 0.08 1.03 5.19 86.30 0.45 1.48 16 18 C -0.09 -1.22 3.29 -9.40 -0.03 -1.25 16 19 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 20 C -0.11 -0.49 6.42 31.78 0.20 -0.28 16 21 C 0.08 0.48 6.21 86.73 0.54 1.01 16 22 N -0.60 -9.38 3.33 -811.82 -2.70 -12.08 16 23 C 0.47 9.84 7.68 87.66 0.67 10.51 16 24 O -0.56 -18.20 16.88 -3.01 -0.05 -18.26 16 25 C 0.27 3.46 5.17 71.24 0.37 3.83 16 26 F -0.19 -3.92 16.95 44.97 0.76 -3.16 16 27 F -0.19 -2.54 15.84 44.97 0.71 -1.83 16 28 C 0.10 1.84 5.60 86.85 0.49 2.33 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 32 H 0.10 2.17 6.44 -2.39 -0.02 2.15 16 33 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 34 H 0.02 1.16 8.07 -2.39 -0.02 1.15 16 35 H -0.01 -0.53 7.42 -2.39 -0.02 -0.54 16 36 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.12 2.51 7.40 -2.39 -0.02 2.49 16 38 H 0.09 1.64 7.18 -2.38 -0.02 1.62 16 39 H 0.34 9.77 7.59 -89.70 -0.68 9.09 16 40 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.06 0.54 8.10 -2.39 -0.02 0.53 16 42 H 0.11 0.17 8.14 -2.38 -0.02 0.15 16 43 H 0.10 0.09 8.04 -2.39 -0.02 0.07 16 44 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.09 0.50 7.15 -2.39 -0.02 0.48 16 46 H 0.19 0.21 8.14 -2.38 -0.02 0.19 16 47 H 0.08 1.33 8.00 -2.39 -0.02 1.31 16 48 H 0.05 1.30 7.94 -2.39 -0.02 1.28 16 Total: -1.00 -91.25 401.42 2.24 -89.01 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.29 Total: 10.57 kcal Atomic # 6 Polarization: 18.83 SS G_CDS: 6.16 Total: 24.99 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -7.62 Total: -117.73 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.10 Total: -49.85 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 1.47 Total: -4.98 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -91.25 2.24 -89.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371558561.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.582 kcal (2) G-P(sol) polarization free energy of solvation -91.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds