Wall clock time and date at job start Wed Apr 1 2020 04:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46938 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47198 * 120.00527 * 9 7 5 12 12 H 1.48498 * 109.47360 * 240.00281 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 N 1.46889 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99739 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.47014 * 179.97438 * 17 16 15 19 19 H 1.08992 * 110.88458 * 302.57104 * 18 17 16 20 20 C 1.55158 * 111.00201 * 178.64486 * 18 17 16 21 21 C 1.54323 * 102.94205 * 206.42214 * 20 18 17 22 22 N 1.47018 * 107.27170 * 22.19838 * 21 20 18 23 23 C 1.34778 * 125.65135 * 181.09740 * 22 21 20 24 24 O 1.21277 * 120.00346 * 179.97438 * 23 22 21 25 25 C 1.50702 * 119.99663 * 359.95258 * 23 22 21 26 26 F 1.39901 * 109.47062 * 185.00494 * 25 23 22 27 27 F 1.39905 * 109.47297 * 305.00199 * 25 23 22 28 28 C 1.47426 * 108.70350 * 1.05674 * 22 21 20 29 29 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 30 30 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 32 32 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 33 33 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 34 34 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 35 35 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 36 36 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46762 * 300.00389 * 15 13 3 38 38 H 1.08998 * 109.46924 * 59.99727 * 15 13 3 39 39 H 1.00903 * 111.00618 * 56.04690 * 16 15 13 40 40 H 1.09002 * 109.46999 * 299.99576 * 17 16 15 41 41 H 1.08995 * 109.47671 * 59.99925 * 17 16 15 42 42 H 1.08995 * 110.72530 * 324.78682 * 20 18 17 43 43 H 1.09001 * 110.71692 * 88.06561 * 20 18 17 44 44 H 1.09000 * 109.88387 * 262.77761 * 21 20 18 45 45 H 1.09003 * 110.00990 * 141.68825 * 21 20 18 46 46 H 1.09005 * 109.47375 * 65.00420 * 25 23 22 47 47 H 1.09002 * 110.36739 * 217.03946 * 28 22 21 48 48 H 1.08997 * 110.46363 * 94.75747 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3493 3.1266 3.6176 9 14 5.9133 2.0964 3.4172 10 1 6.6007 1.2403 2.4172 11 1 6.6214 3.3972 3.5249 12 1 5.9203 1.4182 4.7383 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 7 2.2990 2.2100 -3.5888 17 6 2.0649 1.5500 -4.8801 18 6 2.3999 2.5186 -6.0161 19 1 1.8099 3.4315 -5.9351 20 6 2.1971 1.8452 -7.3991 21 6 3.1710 2.6235 -8.3087 22 7 4.1932 3.2251 -7.4400 23 6 5.2145 4.0028 -7.8508 24 8 6.0015 4.4473 -7.0422 25 6 5.3786 4.3195 -9.3150 26 9 6.5624 5.0401 -9.5063 27 9 5.4345 3.1282 -10.0464 28 6 3.9155 2.8377 -6.0449 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0955 3.1411 1.1383 35 1 1.5816 1.6877 2.0284 36 1 3.6753 3.5170 4.4435 37 1 2.6203 0.4232 -2.5321 38 1 0.9397 1.0094 -2.5279 39 1 3.2462 2.5517 -3.5235 40 1 2.6986 0.6664 -4.9567 41 1 1.0184 1.2538 -4.9524 42 1 2.4678 0.7902 -7.3578 43 1 1.1693 1.9677 -7.7407 44 1 2.6330 3.4055 -8.8446 45 1 3.6416 1.9439 -9.0192 46 1 4.5316 4.9153 -9.6551 47 1 4.1423 3.6628 -5.3697 48 1 4.4942 1.9552 -5.7721 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001371558562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:19 Heat of formation + Delta-G solvation = -162.877030 kcal Electronic energy + Delta-G solvation = -30596.260386 eV Core-core repulsion = 25936.121199 eV Total energy + Delta-G solvation = -4660.139188 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.61952 -47.64276 -40.51005 -39.16040 -38.23278 -35.84427 -35.12814 -32.88138 -32.46729 -30.13282 -29.93834 -29.04580 -27.68817 -26.14526 -24.64484 -23.13951 -22.98695 -22.07953 -20.91381 -20.45798 -18.73922 -18.42072 -18.13026 -17.73165 -16.96424 -16.51979 -16.29161 -16.15993 -15.79541 -15.60557 -15.02860 -14.52845 -14.45392 -14.34016 -14.22188 -14.06450 -13.90287 -13.67721 -13.48082 -13.38557 -13.30710 -13.17413 -12.70751 -12.55658 -12.45647 -12.38067 -12.02191 -11.86989 -11.53308 -11.46042 -11.22081 -11.18336 -11.12491 -10.88878 -10.73933 -10.53834 -10.38816 -10.12368 -9.60916 -9.25247 -8.93965 -8.43016 -8.40704 -7.64870 -6.03687 -4.08380 1.70622 2.01649 3.21314 3.30270 3.37790 3.40357 3.43818 3.45785 3.65056 3.98401 4.04806 4.10876 4.19868 4.27760 4.45461 4.51601 4.73066 4.87937 4.93553 5.04439 5.10931 5.21823 5.27152 5.31059 5.32455 5.36920 5.43993 5.46692 5.50263 5.56831 5.64157 5.66836 5.79066 5.89780 6.00617 6.21890 6.46546 6.74924 6.79233 7.11548 7.29744 7.33291 7.46943 7.56574 7.93132 8.24484 8.44160 8.91565 9.12301 9.56959 11.04386 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.002139 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.784669 B =13089.279214 C =14880.437647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.284 1.284 13 C 0.503 3.497 14 O -0.528 6.528 15 C 0.041 3.959 16 N -0.675 5.675 17 C 0.072 3.928 18 C -0.097 4.097 19 H 0.100 0.900 20 C -0.125 4.125 21 C 0.089 3.911 22 N -0.605 5.605 23 C 0.484 3.516 24 O -0.496 6.496 25 C 0.263 3.737 26 F -0.175 7.175 27 F -0.188 7.188 28 C 0.104 3.896 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.352 0.648 40 H 0.033 0.967 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.136 0.864 47 H 0.091 0.909 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.536 -6.435 -27.613 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.210 1.210 13 C 0.289 3.711 14 O -0.404 6.404 15 C -0.091 4.091 16 N -0.308 5.308 17 C -0.058 4.058 18 C -0.117 4.117 19 H 0.118 0.882 20 C -0.163 4.163 21 C -0.033 4.033 22 N -0.340 5.340 23 C 0.267 3.733 24 O -0.369 6.369 25 C 0.205 3.795 26 F -0.156 7.156 27 F -0.169 7.169 28 C -0.018 4.018 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.172 0.828 40 H 0.051 0.949 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.153 0.847 47 H 0.110 0.890 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.393 -5.121 -27.007 28.222 hybrid contribution 1.748 -0.913 0.276 1.992 sum -4.645 -6.034 -26.731 27.795 Atomic orbital electron populations 1.22228 0.96809 1.01331 1.02397 1.21402 0.93496 0.84323 1.02547 1.48254 1.64070 1.13122 1.07730 1.19262 0.96198 0.93691 0.78093 1.21460 0.96925 1.31782 1.06206 0.92537 1.24938 0.97832 0.94938 0.96441 1.69944 1.35578 1.33488 1.14339 0.86454 0.84671 0.78082 0.78266 1.19859 1.20849 1.20988 1.20169 0.78965 0.87116 0.84894 1.90685 1.45201 1.17617 1.86914 1.21903 1.02334 0.94290 0.90567 1.60108 1.33038 1.37522 1.00096 1.21890 1.01610 0.94256 0.88068 1.22428 0.94999 1.00363 0.93905 0.88185 1.22681 0.99628 0.99932 0.94055 1.22314 0.89471 0.97670 0.93850 1.48409 1.27050 1.48546 1.09955 1.20691 0.81746 0.80180 0.90649 1.90873 1.41642 1.50326 1.54086 1.21561 0.87838 0.80791 0.89261 1.93075 1.49883 1.77270 1.95327 1.93038 1.96990 1.48214 1.78676 1.22504 0.95765 1.01553 0.81930 0.93041 0.92243 0.92001 0.91961 0.89980 0.93869 0.95067 0.92779 0.92919 0.88688 0.82798 0.94872 0.90128 0.89977 0.89180 0.90779 0.90086 0.84662 0.89050 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.60 -12.37 2.46 -175.05 -0.43 -12.80 16 4 C 0.25 6.43 5.17 -5.19 -0.03 6.40 16 5 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 9 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.50 10.19 7.71 -10.98 -0.08 10.11 16 14 O -0.53 -13.22 15.78 5.56 0.09 -13.14 16 15 C 0.04 0.57 4.72 -4.98 -0.02 0.55 16 16 N -0.67 -8.71 6.12 -115.06 -0.70 -9.42 16 17 C 0.07 0.60 5.19 -3.82 -0.02 0.58 16 18 C -0.10 -0.70 3.29 -88.47 -0.29 -0.99 16 19 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 20 C -0.12 -0.53 6.42 -24.90 -0.16 -0.69 16 21 C 0.09 0.43 6.16 -3.07 -0.02 0.41 16 22 N -0.60 -5.18 3.33 -170.52 -0.57 -5.75 16 23 C 0.48 5.17 7.68 -10.98 -0.08 5.08 16 24 O -0.50 -7.69 16.88 5.56 0.09 -7.59 16 25 C 0.26 1.96 5.17 36.01 0.19 2.15 16 26 F -0.17 -1.81 16.95 2.25 0.04 -1.78 16 27 F -0.19 -1.42 15.90 2.25 0.04 -1.39 16 28 C 0.10 0.98 5.61 -2.53 -0.01 0.96 16 29 H 0.05 0.62 7.20 -51.93 -0.37 0.24 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.78 6.45 -51.93 -0.33 0.44 16 33 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 34 H 0.04 1.28 7.41 -51.93 -0.38 0.90 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.05 0.65 7.41 -51.93 -0.38 0.26 16 38 H 0.10 1.13 7.16 -51.93 -0.37 0.76 16 39 H 0.35 5.03 7.60 -39.29 -0.30 4.73 16 40 H 0.03 0.25 8.10 -51.93 -0.42 -0.17 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.32 8.04 -51.93 -0.42 -0.10 16 43 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.08 0.35 7.26 -51.93 -0.38 -0.03 16 46 H 0.14 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 1.07 7.95 -51.93 -0.41 0.66 16 48 H 0.07 0.70 8.00 -51.93 -0.42 0.28 16 LS Contribution 401.52 15.07 6.05 6.05 Total: -1.00 -37.00 401.52 -7.82 -44.82 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.53 Total: -0.86 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -0.60 Total: 10.82 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.97 Total: -53.97 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.18 Total: -20.73 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.07 Total: -3.16 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.00 -7.82 -44.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371558562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.061 kcal (2) G-P(sol) polarization free energy of solvation -36.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds