Wall clock time and date at job start Wed Apr 1 2020 04:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46938 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47198 * 120.00527 * 9 7 5 12 12 H 1.48498 * 109.47360 * 240.00281 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 N 1.46889 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99739 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.47014 * 179.97438 * 17 16 15 19 19 H 1.08992 * 110.88458 * 302.57104 * 18 17 16 20 20 C 1.55158 * 111.00201 * 178.64486 * 18 17 16 21 21 C 1.54323 * 102.94205 * 206.42214 * 20 18 17 22 22 N 1.47018 * 107.27170 * 22.19838 * 21 20 18 23 23 C 1.34778 * 125.65135 * 181.09740 * 22 21 20 24 24 O 1.21277 * 120.00346 * 179.97438 * 23 22 21 25 25 C 1.50702 * 119.99663 * 359.95258 * 23 22 21 26 26 F 1.39901 * 109.47062 * 185.00494 * 25 23 22 27 27 F 1.39905 * 109.47297 * 305.00199 * 25 23 22 28 28 C 1.47426 * 108.70350 * 1.05674 * 22 21 20 29 29 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 30 30 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 32 32 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 33 33 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 34 34 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 35 35 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 36 36 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46762 * 300.00389 * 15 13 3 38 38 H 1.08998 * 109.46924 * 59.99727 * 15 13 3 39 39 H 1.00903 * 111.00618 * 56.04690 * 16 15 13 40 40 H 1.09002 * 109.46999 * 299.99576 * 17 16 15 41 41 H 1.08995 * 109.47671 * 59.99925 * 17 16 15 42 42 H 1.08995 * 110.72530 * 324.78682 * 20 18 17 43 43 H 1.09001 * 110.71692 * 88.06561 * 20 18 17 44 44 H 1.09000 * 109.88387 * 262.77761 * 21 20 18 45 45 H 1.09003 * 110.00990 * 141.68825 * 21 20 18 46 46 H 1.09005 * 109.47375 * 65.00420 * 25 23 22 47 47 H 1.09002 * 110.36739 * 217.03946 * 28 22 21 48 48 H 1.08997 * 110.46363 * 94.75747 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3493 3.1266 3.6176 9 14 5.9133 2.0964 3.4172 10 1 6.6007 1.2403 2.4172 11 1 6.6214 3.3972 3.5249 12 1 5.9203 1.4182 4.7383 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 7 2.2990 2.2100 -3.5888 17 6 2.0649 1.5500 -4.8801 18 6 2.3999 2.5186 -6.0161 19 1 1.8099 3.4315 -5.9351 20 6 2.1971 1.8452 -7.3991 21 6 3.1710 2.6235 -8.3087 22 7 4.1932 3.2251 -7.4400 23 6 5.2145 4.0028 -7.8508 24 8 6.0015 4.4473 -7.0422 25 6 5.3786 4.3195 -9.3150 26 9 6.5624 5.0401 -9.5063 27 9 5.4345 3.1282 -10.0464 28 6 3.9155 2.8377 -6.0449 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0955 3.1411 1.1383 35 1 1.5816 1.6877 2.0284 36 1 3.6753 3.5170 4.4435 37 1 2.6203 0.4232 -2.5321 38 1 0.9397 1.0094 -2.5279 39 1 3.2462 2.5517 -3.5235 40 1 2.6986 0.6664 -4.9567 41 1 1.0184 1.2538 -4.9524 42 1 2.4678 0.7902 -7.3578 43 1 1.1693 1.9677 -7.7407 44 1 2.6330 3.4055 -8.8446 45 1 3.6416 1.9439 -9.0192 46 1 4.5316 4.9153 -9.6551 47 1 4.1423 3.6628 -5.3697 48 1 4.4942 1.9552 -5.7721 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001371558562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:18 Heat of formation + Delta-G solvation = -190.724694 kcal Electronic energy + Delta-G solvation = -30597.467952 eV Core-core repulsion = 25936.121199 eV Total energy + Delta-G solvation = -4661.346753 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -50.25598 -48.29551 -41.23792 -40.69062 -39.04297 -37.07628 -36.47903 -34.91439 -33.33982 -31.61077 -30.59227 -29.93104 -29.10456 -27.40833 -25.64103 -24.63752 -23.96714 -23.29475 -21.51892 -21.13305 -19.93535 -19.31034 -18.80401 -18.63377 -18.39187 -18.01528 -17.49984 -17.14366 -17.03336 -16.66501 -16.32799 -15.97093 -15.20861 -15.12146 -15.09203 -14.98617 -14.87698 -14.63277 -14.62058 -14.42919 -14.20849 -14.13773 -14.01238 -13.54419 -13.42638 -13.27151 -13.22902 -13.14641 -13.02722 -12.73554 -12.68930 -12.47800 -12.16043 -12.07052 -11.88231 -11.83549 -11.69759 -11.61396 -11.18595 -10.66711 -10.55598 -9.94647 -9.42394 -9.35881 -8.23999 -6.38816 0.92491 1.33452 1.34805 1.36678 1.47737 1.88434 2.25808 2.41100 2.65657 2.90938 3.05263 3.17722 3.44880 3.53826 3.62810 3.66886 3.75667 3.93115 4.12314 4.23347 4.30680 4.37879 4.40445 4.41249 4.50225 4.58310 4.66225 4.71252 4.78869 4.88320 4.91779 4.94763 5.00853 5.01512 5.06875 5.19451 5.22416 5.37239 5.41994 5.57575 5.84869 5.97810 6.06015 6.09084 6.27416 6.57245 6.70122 6.85203 7.27855 7.54155 8.83117 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.002139 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.784669 B =13089.279214 C =14880.437647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.539 4.539 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.490 3.510 14 O -0.590 6.590 15 C 0.060 3.940 16 N -0.696 5.696 17 C 0.074 3.926 18 C -0.089 4.089 19 H 0.090 0.910 20 C -0.112 4.112 21 C 0.081 3.919 22 N -0.600 5.600 23 C 0.472 3.528 24 O -0.563 6.563 25 C 0.270 3.730 26 F -0.194 7.194 27 F -0.186 7.186 28 C 0.099 3.901 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.034 0.966 32 H 0.103 0.897 33 H 0.069 0.931 34 H -0.007 1.007 35 H 0.021 0.979 36 H 0.267 0.733 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.338 0.662 40 H 0.048 0.952 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.191 0.809 47 H 0.054 0.946 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.906 -9.303 -30.513 32.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.192 1.192 13 C 0.279 3.721 14 O -0.471 6.471 15 C -0.072 4.072 16 N -0.328 5.328 17 C -0.055 4.055 18 C -0.109 4.109 19 H 0.109 0.891 20 C -0.150 4.150 21 C -0.040 4.040 22 N -0.332 5.332 23 C 0.257 3.743 24 O -0.441 6.441 25 C 0.214 3.786 26 F -0.175 7.175 27 F -0.167 7.167 28 C -0.024 4.024 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.054 0.946 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.011 0.989 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.144 0.856 39 H 0.156 0.844 40 H 0.066 0.934 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.135 0.865 44 H 0.120 0.880 45 H 0.112 0.888 46 H 0.208 0.792 47 H 0.072 0.928 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.839 -8.080 -29.959 32.004 hybrid contribution 2.104 -0.047 1.175 2.411 sum -5.734 -8.127 -28.783 30.453 Atomic orbital electron populations 1.22156 0.94494 1.03513 1.01704 1.21756 0.95371 0.81237 1.03906 1.48295 1.64179 1.15097 1.06164 1.18664 0.95165 0.91436 0.80657 1.21733 0.97904 1.31776 1.06401 0.92960 1.25869 1.02354 0.94541 0.96542 1.70062 1.37677 1.34299 1.14843 0.85377 0.79053 0.77949 0.78466 1.19150 1.20970 1.19234 1.21426 0.77294 0.86702 0.86727 1.90649 1.47849 1.20601 1.87966 1.21819 1.04568 0.93945 0.86890 1.60145 1.32278 1.38545 1.01806 1.22032 1.03167 0.94499 0.85784 1.22337 0.92572 1.00280 0.95662 0.89148 1.22709 1.00941 1.00018 0.91292 1.22691 0.88819 0.98814 0.93688 1.48580 1.27025 1.47338 1.10293 1.21428 0.81328 0.79651 0.91897 1.90836 1.44108 1.53058 1.56095 1.21856 0.88576 0.81172 0.87028 1.93033 1.51520 1.77742 1.95235 1.93040 1.97005 1.48406 1.78226 1.22472 0.97816 0.99938 0.82136 0.91838 0.88514 0.94631 0.87939 0.91252 0.98877 0.96097 0.92434 0.90347 0.85574 0.84360 0.93380 0.87906 0.88849 0.86527 0.87981 0.88837 0.79205 0.92767 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 10.24 71.98 0.74 -2.98 16 2 C 0.10 2.89 5.93 86.38 0.51 3.40 16 3 N -0.61 -25.45 2.46 -826.13 -2.03 -27.48 16 4 C 0.26 14.43 5.17 85.63 0.44 14.88 16 5 C -0.54 -31.69 9.39 25.60 0.24 -31.45 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 9 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.49 20.16 7.71 87.66 0.68 20.84 16 14 O -0.59 -31.28 15.78 -3.03 -0.05 -31.33 16 15 C 0.06 1.52 4.72 85.56 0.40 1.92 16 16 N -0.70 -17.27 6.12 -517.94 -3.17 -20.45 16 17 C 0.07 1.01 5.19 86.31 0.45 1.45 16 18 C -0.09 -1.09 3.29 -9.40 -0.03 -1.13 16 19 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 20 C -0.11 -0.49 6.42 31.78 0.20 -0.28 16 21 C 0.08 0.49 6.16 86.73 0.53 1.03 16 22 N -0.60 -9.72 3.33 -811.79 -2.70 -12.42 16 23 C 0.47 10.14 7.68 87.66 0.67 10.81 16 24 O -0.56 -18.73 16.88 -3.02 -0.05 -18.78 16 25 C 0.27 3.60 5.17 71.24 0.37 3.97 16 26 F -0.19 -3.98 16.95 44.97 0.76 -3.22 16 27 F -0.19 -2.38 15.90 44.97 0.71 -1.67 16 28 C 0.10 1.88 5.61 86.86 0.49 2.37 16 29 H 0.06 1.32 7.20 -2.39 -0.02 1.30 16 30 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 2.16 6.45 -2.39 -0.02 2.14 16 33 H 0.07 2.19 8.07 -2.38 -0.02 2.17 16 34 H -0.01 -0.44 7.41 -2.39 -0.02 -0.46 16 35 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 36 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.08 1.63 7.41 -2.39 -0.02 1.61 16 38 H 0.13 2.46 7.16 -2.39 -0.02 2.44 16 39 H 0.34 10.00 7.60 -89.69 -0.68 9.32 16 40 H 0.05 0.55 8.10 -2.39 -0.02 0.53 16 41 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 0.26 8.04 -2.39 -0.02 0.24 16 43 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.09 0.42 7.26 -2.39 -0.02 0.40 16 46 H 0.19 0.46 8.14 -2.38 -0.02 0.44 16 47 H 0.05 1.43 7.95 -2.39 -0.02 1.41 16 48 H 0.07 1.35 8.00 -2.39 -0.02 1.33 16 Total: -1.00 -90.09 401.52 2.24 -87.86 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.29 Total: 10.93 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: 6.16 Total: 25.63 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -7.62 Total: -117.48 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -0.10 Total: -50.11 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 1.48 Total: -4.89 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -90.09 2.24 -87.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371558562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.867 kcal (2) G-P(sol) polarization free energy of solvation -90.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds