Wall clock time and date at job start Wed Apr 1 2020 04:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46509 * 109.47148 * 2 1 4 4 C 1.46499 * 119.99732 * 269.99841 * 3 2 1 5 5 C 1.50693 * 109.47468 * 269.99786 * 4 3 2 6 6 H 1.08006 * 119.99555 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00373 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99652 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99945 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47371 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47185 * 119.99667 * 9 7 5 12 12 H 1.48504 * 109.46813 * 239.99595 * 9 7 5 13 13 C 1.34771 * 120.00003 * 89.99660 * 3 2 1 14 14 O 1.21283 * 119.99914 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00151 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47095 * 179.97438 * 15 13 3 17 17 C 1.46843 * 111.00190 * 293.95517 * 16 15 13 18 18 C 1.53040 * 109.52392 * 185.84009 * 17 16 15 19 19 C 1.53115 * 109.27691 * 300.82256 * 18 17 16 20 20 C 1.53119 * 109.16284 * 57.65464 * 19 18 17 21 21 H 1.09002 * 109.50244 * 62.28522 * 20 19 18 22 22 N 1.46501 * 109.50296 * 182.36303 * 20 19 18 23 23 C 1.34774 * 120.00443 * 274.92120 * 22 20 19 24 24 O 1.21287 * 119.99818 * 359.97438 * 23 22 20 25 25 C 1.50697 * 119.99961 * 180.02562 * 23 22 20 26 26 F 1.39902 * 109.46750 * 184.99703 * 25 23 22 27 27 F 1.39895 * 109.46953 * 304.99268 * 25 23 22 28 28 C 1.46846 * 110.99745 * 58.16785 * 16 15 13 29 29 H 1.09002 * 109.47225 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47532 * 300.00402 * 1 2 3 31 31 H 1.09004 * 109.47078 * 60.00048 * 1 2 3 32 32 H 1.08998 * 109.47596 * 240.00071 * 2 1 3 33 33 H 1.08995 * 109.47277 * 119.99388 * 2 1 3 34 34 H 1.08999 * 109.47261 * 30.00108 * 4 3 2 35 35 H 1.09006 * 109.47026 * 149.99590 * 4 3 2 36 36 H 0.97004 * 119.99461 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.47030 * 60.00051 * 15 13 3 38 38 H 1.08998 * 109.47135 * 300.00144 * 15 13 3 39 39 H 1.08997 * 109.46271 * 65.82450 * 17 16 15 40 40 H 1.08996 * 109.46613 * 305.85583 * 17 16 15 41 41 H 1.09001 * 109.50523 * 180.88031 * 18 17 16 42 42 H 1.08999 * 109.50216 * 60.76494 * 18 17 16 43 43 H 1.09003 * 109.52471 * 297.74888 * 19 18 17 44 44 H 1.08999 * 109.57685 * 177.59259 * 19 18 17 45 45 H 0.97002 * 119.99771 * 94.92285 * 22 20 19 46 46 H 1.08999 * 109.47494 * 65.00405 * 25 23 22 47 47 H 1.08996 * 109.46322 * 54.14706 * 28 16 15 48 48 H 1.08991 * 109.46240 * 294.17139 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0961 7 6 4.1494 2.3905 -2.8775 8 7 3.3493 3.1265 -3.6176 9 14 5.9134 2.0964 -3.4170 10 1 6.6008 1.2405 -2.4170 11 1 5.9205 1.4181 -4.7381 12 1 6.6215 3.3973 -3.5247 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1603 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2060 3.5888 17 6 3.7470 2.5097 3.6266 18 6 4.0641 3.3271 4.8809 19 6 3.2496 4.6235 4.8587 20 6 1.7601 4.2798 4.7705 21 1 1.4635 3.7166 5.6553 22 7 0.9769 5.5154 4.6919 23 6 0.6261 6.1639 5.8201 24 8 0.9585 5.7243 6.9005 25 6 -0.1800 7.4346 5.7391 26 9 -0.3214 7.9794 7.0199 27 9 0.4772 8.3518 4.9122 28 6 1.5098 3.4348 3.5193 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0954 3.1411 -1.1385 36 1 3.6756 3.5176 -4.4432 37 1 2.6228 0.4189 2.5299 38 1 0.9444 1.0115 2.5302 39 1 4.0204 3.0830 2.7408 40 1 4.3146 1.5794 3.6463 41 1 5.1275 3.5657 4.9007 42 1 3.8038 2.7489 5.7675 43 1 3.5377 5.2200 3.9931 44 1 3.4394 5.1897 5.7706 45 1 0.7107 5.8668 3.8278 46 1 -1.1649 7.2145 5.3273 47 1 0.4526 3.1763 3.4612 48 1 1.7937 4.0037 2.6341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001373366046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:16 Heat of formation + Delta-G solvation = -164.215253 kcal Electronic energy + Delta-G solvation = -31947.657810 eV Core-core repulsion = 27287.460592 eV Total energy + Delta-G solvation = -4660.197218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.46931 -47.49624 -40.47464 -39.63991 -37.88009 -35.54699 -34.85634 -33.07246 -32.64038 -30.38310 -30.19539 -28.43065 -27.71440 -26.36087 -23.63125 -23.11055 -22.99982 -22.20578 -21.05774 -20.14178 -18.73160 -18.39494 -18.10710 -17.77444 -16.70997 -16.43782 -16.39351 -15.89485 -15.50248 -15.08030 -14.98519 -14.78124 -14.51118 -14.29895 -14.22786 -13.88605 -13.82181 -13.65740 -13.51066 -13.45157 -13.12625 -12.68989 -12.64370 -12.46368 -12.32131 -12.07004 -11.78111 -11.61220 -11.30020 -11.15057 -10.98545 -10.94684 -10.79552 -10.69720 -10.63619 -10.53679 -10.22122 -10.18227 -9.74798 -9.66009 -9.39657 -8.51878 -7.89787 -7.74527 -6.12721 -4.17606 1.85058 2.27810 3.21145 3.23548 3.31858 3.35481 3.47236 3.72415 3.83810 4.04376 4.20794 4.37120 4.37561 4.71677 4.80740 4.97964 5.00293 5.11580 5.22152 5.25220 5.35301 5.42618 5.50292 5.54242 5.58927 5.66415 5.69287 5.88029 5.93947 5.94969 5.99215 6.08573 6.11346 6.15687 6.22307 6.38890 6.42866 6.88189 6.94595 7.02945 7.06905 7.33888 7.44408 7.58189 7.83321 8.14578 8.30144 8.79701 8.95580 9.48000 10.95326 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.002636 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.173528 B =10618.957822 C =11087.999648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.593 5.593 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.474 3.526 14 O -0.542 6.542 15 C 0.033 3.967 16 N -0.510 5.510 17 C 0.036 3.964 18 C -0.108 4.108 19 C -0.130 4.130 20 C 0.151 3.849 21 H 0.096 0.904 22 N -0.705 5.705 23 C 0.474 3.526 24 O -0.504 6.504 25 C 0.257 3.743 26 F -0.177 7.177 27 F -0.187 7.187 28 C 0.026 3.974 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.408 0.592 46 H 0.137 0.863 47 H 0.070 0.930 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.460 -0.193 15.439 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.324 5.324 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.260 3.740 14 O -0.421 6.421 15 C -0.098 4.098 16 N -0.233 5.233 17 C -0.091 4.091 18 C -0.146 4.146 19 C -0.169 4.169 20 C 0.047 3.953 21 H 0.114 0.886 22 N -0.356 5.356 23 C 0.254 3.746 24 O -0.377 6.377 25 C 0.200 3.800 26 F -0.158 7.158 27 F -0.168 7.168 28 C -0.103 4.103 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.243 0.757 46 H 0.155 0.845 47 H 0.089 0.911 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.115 -0.034 16.490 18.379 hybrid contribution 1.015 0.477 -1.704 2.040 sum -7.100 0.443 14.786 16.409 Atomic orbital electron populations 1.22208 0.96674 1.01550 1.02239 1.21442 0.93575 0.84149 1.02806 1.48427 1.62770 1.13224 1.08021 1.19260 0.96291 0.93538 0.78300 1.21434 0.96852 1.31869 1.06287 0.92528 1.24933 0.97856 0.94899 0.96386 1.69937 1.35590 1.33419 1.14352 0.86459 0.84598 0.78087 0.78374 1.19813 1.20923 1.20868 1.21595 0.78670 0.87490 0.86231 1.90545 1.46540 1.18213 1.86819 1.22341 1.03442 0.96750 0.87285 1.62330 1.06287 1.14563 1.40098 1.22344 0.87829 1.00187 0.98784 1.21474 0.99411 0.95391 0.98358 1.21948 0.94071 0.98401 1.02465 1.21053 0.90720 0.83367 1.00154 0.88627 1.45968 1.54593 1.26471 1.08609 1.21008 0.81634 0.86335 0.85584 1.90819 1.52837 1.66481 1.27612 1.21670 0.98059 0.84225 0.76077 1.93060 1.96501 1.86480 1.39795 1.93075 1.83441 1.68728 1.71574 1.22589 0.97804 0.92022 0.97848 0.92044 0.93088 0.92097 0.89915 0.91595 0.95160 0.94043 0.92743 0.88123 0.88320 0.91166 0.91066 0.91154 0.91323 0.91296 0.91643 0.75717 0.84547 0.91109 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.48 16 3 N -0.59 -11.36 2.46 -175.06 -0.43 -11.79 16 4 C 0.25 6.04 5.16 -5.20 -0.03 6.02 16 5 C -0.53 -14.28 9.39 -34.44 -0.32 -14.61 16 6 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 9 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.47 8.62 7.09 -10.99 -0.08 8.54 16 14 O -0.54 -11.70 11.20 5.55 0.06 -11.64 16 15 C 0.03 0.44 4.41 -4.98 -0.02 0.42 16 16 N -0.51 -6.71 4.86 -236.12 -1.15 -7.86 16 17 C 0.04 0.50 5.09 -3.83 -0.02 0.48 16 18 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 19 C -0.13 -1.61 5.58 -26.61 -0.15 -1.76 16 20 C 0.15 1.78 2.62 -67.85 -0.18 1.60 16 21 H 0.10 1.23 7.58 -51.93 -0.39 0.83 16 22 N -0.70 -7.04 5.08 -53.72 -0.27 -7.32 16 23 C 0.47 5.17 7.60 -10.99 -0.08 5.09 16 24 O -0.50 -7.43 16.28 5.55 0.09 -7.34 16 25 C 0.26 2.13 5.72 36.00 0.21 2.33 16 26 F -0.18 -1.92 16.95 2.25 0.04 -1.88 16 27 F -0.19 -1.78 17.32 2.25 0.04 -1.74 16 28 C 0.03 0.33 4.45 -3.83 -0.02 0.31 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.56 7.22 -51.93 -0.38 0.19 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 33 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 34 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.04 1.16 7.42 -51.93 -0.39 0.77 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.10 1.20 7.32 -51.93 -0.38 0.82 16 38 H 0.10 1.11 7.19 -51.93 -0.37 0.74 16 39 H 0.07 1.21 6.00 -51.93 -0.31 0.90 16 40 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.41 3.31 8.60 -40.82 -0.35 2.96 16 46 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 48 H 0.09 1.40 5.36 -51.93 -0.28 1.12 16 LS Contribution 391.69 15.07 5.90 5.90 Total: -1.00 -33.46 391.69 -7.96 -41.42 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.37 Total: 2.60 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -0.59 Total: 8.43 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -1.11 Total: -52.04 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.15 Total: -18.98 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.08 Total: -3.62 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.46 -7.96 -41.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001373366046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.791 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds