Wall clock time and date at job start Wed Apr 1 2020 04:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46509 * 109.47148 * 2 1 4 4 C 1.46499 * 119.99732 * 269.99841 * 3 2 1 5 5 C 1.50693 * 109.47468 * 269.99786 * 4 3 2 6 6 H 1.08006 * 119.99555 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00373 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99652 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99945 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47371 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47185 * 119.99667 * 9 7 5 12 12 H 1.48504 * 109.46813 * 239.99595 * 9 7 5 13 13 C 1.34771 * 120.00003 * 89.99660 * 3 2 1 14 14 O 1.21283 * 119.99914 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00151 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47095 * 179.97438 * 15 13 3 17 17 C 1.46843 * 111.00190 * 293.95517 * 16 15 13 18 18 C 1.53040 * 109.52392 * 185.84009 * 17 16 15 19 19 C 1.53115 * 109.27691 * 300.82256 * 18 17 16 20 20 C 1.53119 * 109.16284 * 57.65464 * 19 18 17 21 21 H 1.09002 * 109.50244 * 62.28522 * 20 19 18 22 22 N 1.46501 * 109.50296 * 182.36303 * 20 19 18 23 23 C 1.34774 * 120.00443 * 274.92120 * 22 20 19 24 24 O 1.21287 * 119.99818 * 359.97438 * 23 22 20 25 25 C 1.50697 * 119.99961 * 180.02562 * 23 22 20 26 26 F 1.39902 * 109.46750 * 184.99703 * 25 23 22 27 27 F 1.39895 * 109.46953 * 304.99268 * 25 23 22 28 28 C 1.46846 * 110.99745 * 58.16785 * 16 15 13 29 29 H 1.09002 * 109.47225 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47532 * 300.00402 * 1 2 3 31 31 H 1.09004 * 109.47078 * 60.00048 * 1 2 3 32 32 H 1.08998 * 109.47596 * 240.00071 * 2 1 3 33 33 H 1.08995 * 109.47277 * 119.99388 * 2 1 3 34 34 H 1.08999 * 109.47261 * 30.00108 * 4 3 2 35 35 H 1.09006 * 109.47026 * 149.99590 * 4 3 2 36 36 H 0.97004 * 119.99461 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.47030 * 60.00051 * 15 13 3 38 38 H 1.08998 * 109.47135 * 300.00144 * 15 13 3 39 39 H 1.08997 * 109.46271 * 65.82450 * 17 16 15 40 40 H 1.08996 * 109.46613 * 305.85583 * 17 16 15 41 41 H 1.09001 * 109.50523 * 180.88031 * 18 17 16 42 42 H 1.08999 * 109.50216 * 60.76494 * 18 17 16 43 43 H 1.09003 * 109.52471 * 297.74888 * 19 18 17 44 44 H 1.08999 * 109.57685 * 177.59259 * 19 18 17 45 45 H 0.97002 * 119.99771 * 94.92285 * 22 20 19 46 46 H 1.08999 * 109.47494 * 65.00405 * 25 23 22 47 47 H 1.08996 * 109.46322 * 54.14706 * 28 16 15 48 48 H 1.08991 * 109.46240 * 294.17139 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0961 7 6 4.1494 2.3905 -2.8775 8 7 3.3493 3.1265 -3.6176 9 14 5.9134 2.0964 -3.4170 10 1 6.6008 1.2405 -2.4170 11 1 5.9205 1.4181 -4.7381 12 1 6.6215 3.3973 -3.5247 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1603 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2060 3.5888 17 6 3.7470 2.5097 3.6266 18 6 4.0641 3.3271 4.8809 19 6 3.2496 4.6235 4.8587 20 6 1.7601 4.2798 4.7705 21 1 1.4635 3.7166 5.6553 22 7 0.9769 5.5154 4.6919 23 6 0.6261 6.1639 5.8201 24 8 0.9585 5.7243 6.9005 25 6 -0.1800 7.4346 5.7391 26 9 -0.3214 7.9794 7.0199 27 9 0.4772 8.3518 4.9122 28 6 1.5098 3.4348 3.5193 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0954 3.1411 -1.1385 36 1 3.6756 3.5176 -4.4432 37 1 2.6228 0.4189 2.5299 38 1 0.9444 1.0115 2.5302 39 1 4.0204 3.0830 2.7408 40 1 4.3146 1.5794 3.6463 41 1 5.1275 3.5657 4.9007 42 1 3.8038 2.7489 5.7675 43 1 3.5377 5.2200 3.9931 44 1 3.4394 5.1897 5.7706 45 1 0.7107 5.8668 3.8278 46 1 -1.1649 7.2145 5.3273 47 1 0.4526 3.1763 3.4612 48 1 1.7937 4.0037 2.6341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001373366046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:13 Heat of formation + Delta-G solvation = -188.670622 kcal Electronic energy + Delta-G solvation = -31948.718274 eV Core-core repulsion = 27287.460592 eV Total energy + Delta-G solvation = -4661.257682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -50.20687 -48.24797 -41.59711 -40.78359 -39.06718 -36.94666 -35.93972 -34.93179 -33.86111 -31.58581 -31.34653 -29.85064 -28.59688 -27.89101 -25.18070 -24.33508 -23.98941 -23.55876 -21.97510 -21.19198 -19.92160 -19.45788 -18.81334 -18.63248 -18.56456 -17.89869 -17.52453 -17.04203 -16.68969 -16.46830 -16.01992 -15.95252 -15.91036 -15.52117 -15.11505 -15.02758 -14.73265 -14.63552 -14.59849 -14.56252 -14.32284 -14.10321 -13.79096 -13.58913 -13.42613 -13.25002 -13.21074 -13.07674 -12.69330 -12.68916 -12.48990 -12.28795 -12.11479 -11.95812 -11.85464 -11.79705 -11.63989 -11.56381 -11.11400 -11.09032 -10.66243 -10.33924 -9.39962 -9.11677 -8.23718 -6.37992 0.98379 1.34356 1.36483 1.46362 1.47709 1.82792 2.31040 2.47457 2.75339 2.96680 3.06072 3.09391 3.54950 3.67967 3.70662 3.75858 3.86597 3.98107 4.08084 4.18345 4.34140 4.41469 4.47424 4.47743 4.57579 4.64089 4.67901 4.85262 4.88670 4.96191 4.98055 5.01570 5.06644 5.08397 5.11200 5.16326 5.23226 5.37249 5.41988 5.58961 5.85691 5.89194 5.96179 6.06644 6.11964 6.70362 6.74722 6.84385 7.28508 7.51120 8.82926 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.002636 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.173528 B =10618.957822 C =11087.999648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.264 3.736 5 C -0.537 4.537 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.963 3.037 10 H -0.267 1.267 11 H -0.271 1.271 12 H -0.283 1.283 13 C 0.466 3.534 14 O -0.583 6.583 15 C 0.045 3.955 16 N -0.500 5.500 17 C 0.039 3.961 18 C -0.102 4.102 19 C -0.128 4.128 20 C 0.159 3.841 21 H 0.093 0.907 22 N -0.696 5.696 23 C 0.473 3.527 24 O -0.545 6.545 25 C 0.262 3.738 26 F -0.192 7.192 27 F -0.194 7.194 28 C 0.032 3.968 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.016 0.984 35 H -0.003 1.003 36 H 0.266 0.734 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.031 0.969 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.061 0.939 45 H 0.418 0.582 46 H 0.193 0.807 47 H 0.088 0.912 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.028 -1.947 16.712 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.142 3.858 5 C -0.576 4.576 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.788 3.212 10 H -0.191 1.191 11 H -0.196 1.196 12 H -0.210 1.210 13 C 0.254 3.746 14 O -0.465 6.465 15 C -0.086 4.086 16 N -0.223 5.223 17 C -0.089 4.089 18 C -0.140 4.140 19 C -0.166 4.166 20 C 0.054 3.946 21 H 0.111 0.889 22 N -0.348 5.348 23 C 0.255 3.745 24 O -0.422 6.422 25 C 0.205 3.795 26 F -0.173 7.173 27 F -0.175 7.175 28 C -0.096 4.096 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.034 0.966 35 H 0.015 0.985 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.049 0.951 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.255 0.745 46 H 0.209 0.791 47 H 0.106 0.894 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.706 -1.813 17.761 19.863 hybrid contribution 1.181 1.037 -2.102 2.624 sum -7.526 -0.776 15.659 17.391 Atomic orbital electron populations 1.22140 0.94526 1.03465 1.01671 1.21750 0.95325 0.81453 1.03895 1.48449 1.63374 1.15003 1.06448 1.18630 0.94903 0.91503 0.80748 1.21720 0.97956 1.31588 1.06338 0.93030 1.25810 1.02073 0.94620 0.96561 1.70051 1.37553 1.34352 1.14843 0.85434 0.79424 0.77936 0.78419 1.19092 1.19605 1.20951 1.22631 0.77389 0.87187 0.87393 1.90553 1.48059 1.20336 1.87546 1.22497 1.05796 0.96599 0.83756 1.62427 1.05884 1.14639 1.39304 1.22295 0.88415 1.00351 0.97852 1.21447 0.99823 0.94871 0.97888 1.21905 0.94863 0.98521 1.01355 1.20877 0.90406 0.83904 0.99390 0.88946 1.45901 1.53885 1.25906 1.09126 1.21511 0.81098 0.86978 0.84865 1.90799 1.54530 1.67877 1.29027 1.22013 0.99611 0.82356 0.75494 1.93030 1.96545 1.86592 1.41145 1.93064 1.83932 1.68868 1.71653 1.22502 0.98565 0.91685 0.96871 0.88804 0.91733 0.94599 0.91441 0.87863 0.96574 0.98526 0.92518 0.85835 0.85189 0.95096 0.89879 0.90431 0.90081 0.92977 0.92070 0.74539 0.79065 0.89395 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 10.24 71.98 0.74 -2.70 16 2 C 0.10 2.65 5.93 86.38 0.51 3.17 16 3 N -0.60 -23.11 2.46 -826.17 -2.03 -25.14 16 4 C 0.26 13.57 5.16 85.63 0.44 14.01 16 5 C -0.54 -29.98 9.39 25.60 0.24 -29.73 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 7 C 0.01 0.47 5.46 84.66 0.46 0.93 16 8 N -0.93 -55.11 13.29 21.45 0.28 -54.83 16 9 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 13 C 0.47 16.82 7.09 87.66 0.62 17.44 16 14 O -0.58 -26.14 11.20 -3.04 -0.03 -26.18 16 15 C 0.04 1.06 4.41 85.56 0.38 1.44 16 16 N -0.50 -12.23 4.86 -900.96 -4.38 -16.61 16 17 C 0.04 1.04 5.09 86.33 0.44 1.48 16 18 C -0.10 -2.34 6.09 30.65 0.19 -2.16 16 19 C -0.13 -3.17 5.58 30.67 0.17 -3.00 16 20 C 0.16 3.61 2.62 45.04 0.12 3.73 16 21 H 0.09 2.24 7.58 -2.39 -0.02 2.22 16 22 N -0.70 -13.34 5.08 -442.27 -2.25 -15.59 16 23 C 0.47 9.86 7.60 87.66 0.67 10.53 16 24 O -0.55 -15.87 16.28 -3.05 -0.05 -15.92 16 25 C 0.26 3.85 5.72 71.23 0.41 4.26 16 26 F -0.19 -3.93 16.95 44.97 0.76 -3.17 16 27 F -0.19 -3.44 17.32 44.97 0.78 -2.66 16 28 C 0.03 0.79 4.45 86.33 0.38 1.17 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.21 7.22 -2.39 -0.02 1.20 16 31 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 33 H 0.10 2.02 6.44 -2.39 -0.02 2.01 16 34 H 0.02 0.86 8.07 -2.39 -0.02 0.84 16 35 H 0.00 -0.20 7.42 -2.38 -0.02 -0.22 16 36 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.12 2.45 7.32 -2.39 -0.02 2.43 16 38 H 0.13 2.34 7.19 -2.39 -0.02 2.33 16 39 H 0.03 1.09 6.00 -2.39 -0.01 1.08 16 40 H 0.08 2.00 8.06 -2.39 -0.02 1.98 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 45 H 0.42 6.43 8.60 -92.71 -0.80 5.63 16 46 H 0.19 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.09 1.85 8.12 -2.39 -0.02 1.83 16 48 H 0.06 1.91 5.36 -2.39 -0.01 1.90 16 Total: -1.00 -77.37 391.69 1.07 -76.31 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.19 Total: 17.04 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 5.76 Total: 20.57 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -8.37 Total: -112.16 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -0.08 Total: -42.10 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 1.54 Total: -5.83 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -77.37 1.07 -76.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001373366046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.364 kcal (2) G-P(sol) polarization free energy of solvation -77.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds