Wall clock time and date at job start Wed Apr 1 2020 04:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47235 * 59.99855 * 9 7 5 11 11 H 1.48500 * 109.47168 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47142 * 299.99797 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.47480 * 111.00171 * 265.96874 * 16 15 13 18 18 C 1.53513 * 87.93170 * 221.29782 * 17 16 15 19 19 N 1.46500 * 114.34228 * 139.68259 * 18 17 16 20 20 C 1.34783 * 120.00149 * 111.07310 * 19 18 17 21 21 O 1.21281 * 119.99388 * 0.02562 * 20 19 18 22 22 C 1.50692 * 120.00098 * 179.97438 * 20 19 18 23 23 C 1.53002 * 109.46933 * 180.02562 * 22 20 19 24 24 C 1.53000 * 109.47093 * 180.02562 * 23 22 20 25 25 F 1.39899 * 109.47347 * 300.00256 * 23 22 20 26 26 F 1.39897 * 109.47369 * 60.00248 * 23 22 20 27 27 C 1.47482 * 110.99764 * 169.99672 * 16 15 13 28 28 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 30 30 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 31 31 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 32 32 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 33 33 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 34 34 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 35 35 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 37 37 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 38 38 H 1.08999 * 113.47664 * 336.06792 * 17 16 15 39 39 H 1.08994 * 113.47488 * 106.52987 * 17 16 15 40 40 H 1.08999 * 114.16922 * 272.37539 * 18 17 16 41 41 H 0.96996 * 120.00166 * 291.08249 * 19 18 17 42 42 H 1.08996 * 109.47520 * 300.00136 * 22 20 19 43 43 H 1.09001 * 109.47143 * 60.00690 * 22 20 19 44 44 H 1.09001 * 109.47243 * 60.00196 * 24 23 22 45 45 H 1.08998 * 109.47091 * 179.97438 * 24 23 22 46 46 H 1.08996 * 109.47260 * 299.99740 * 24 23 22 47 47 H 1.08994 * 113.48196 * 253.46980 * 27 16 15 48 48 H 1.09003 * 113.47819 * 23.94188 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.1403 0.6387 -3.5947 11 1 6.1604 2.7947 -4.7040 12 1 6.8411 2.6188 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 3.6958 2.0024 4.0530 18 6 3.1733 2.1272 5.4910 19 7 3.7778 1.1861 6.4371 20 6 4.6030 1.6374 7.4025 21 8 4.8446 2.8228 7.4882 22 6 5.2243 0.6694 8.3759 23 6 6.1105 1.4347 9.3608 24 6 6.7419 0.4517 10.3488 25 9 7.1196 2.1023 8.6586 26 9 5.3347 2.3656 10.0599 27 6 1.8567 1.6375 4.8718 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 3.6747 3.5148 -4.4447 36 1 0.9443 1.0114 2.5302 37 1 2.6227 0.4186 2.5299 38 1 4.0915 1.0140 3.8190 39 1 4.3727 2.8069 3.7655 40 1 3.1371 3.1503 5.8655 41 1 3.5843 0.2381 6.3686 42 1 4.4381 0.1495 8.9234 43 1 5.8285 -0.0562 7.8312 44 1 7.3465 -0.2733 9.8038 45 1 7.3735 0.9969 11.0501 46 1 5.9559 -0.0687 10.8960 47 1 0.9750 2.1328 5.2783 48 1 1.7616 0.5517 4.8564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001373452504.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:20 Heat of formation + Delta-G solvation = -129.334294 kcal Electronic energy + Delta-G solvation = -30738.223201 eV Core-core repulsion = 26079.538535 eV Total energy + Delta-G solvation = -4658.684666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.16644 -47.15023 -40.87211 -39.44319 -38.44240 -35.22192 -34.37113 -33.66035 -32.80687 -30.57137 -30.05116 -28.98227 -27.09726 -26.11715 -24.77866 -23.03549 -22.74308 -22.03878 -20.94146 -20.38973 -18.45902 -17.93920 -17.80970 -17.25021 -16.66181 -16.40478 -16.33556 -16.14840 -15.69716 -15.39650 -15.26459 -14.85329 -14.39373 -14.14355 -14.03713 -13.73518 -13.49467 -13.39790 -13.29226 -13.17579 -13.11243 -12.98120 -12.82930 -12.73349 -12.54420 -12.31305 -12.04484 -11.89217 -11.52000 -11.49210 -11.37692 -11.19677 -10.92517 -10.91211 -10.69287 -10.51991 -10.27912 -10.11526 -9.63605 -9.36667 -9.15742 -8.62804 -8.41733 -7.62866 -6.02598 -4.07403 2.21414 2.56677 3.31742 3.31862 3.37002 3.38749 3.47512 3.59399 3.66816 3.94441 3.98296 4.11098 4.31034 4.46375 4.50783 4.58694 4.61908 4.70357 4.97236 4.97545 5.00824 5.13325 5.18057 5.23486 5.25444 5.28412 5.31717 5.42304 5.44185 5.60763 5.69496 5.74573 5.87779 5.98314 6.10747 6.20538 6.22345 6.45145 6.79196 7.05279 7.12491 7.48001 7.58165 7.81809 7.94026 8.25571 8.46072 8.92470 9.16890 9.57643 11.05374 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013701 B = 0.002098 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.165430 B =13344.225450 C =14612.056964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.602 5.602 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.518 6.518 15 C 0.002 3.998 16 N -0.439 5.439 17 C -0.011 4.011 18 C 0.120 3.880 19 N -0.718 5.718 20 C 0.513 3.487 21 O -0.514 6.514 22 C -0.190 4.190 23 C 0.306 3.694 24 C -0.195 4.195 25 F -0.191 7.191 26 F -0.192 7.192 27 C -0.012 4.012 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.132 0.868 41 H 0.401 0.599 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.243 -14.673 26.502 30.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.393 6.393 15 C -0.129 4.129 16 N -0.161 5.161 17 C -0.141 4.141 18 C 0.014 3.986 19 N -0.370 5.370 20 C 0.298 3.702 21 O -0.388 6.388 22 C -0.231 4.231 23 C 0.269 3.731 24 C -0.253 4.253 25 F -0.172 7.172 26 F -0.173 7.173 27 C -0.141 4.141 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.149 0.851 41 H 0.235 0.765 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.109 0.891 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.114 0.886 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.091 -12.358 26.104 28.902 hybrid contribution 1.043 -1.607 -0.480 1.975 sum -0.048 -13.965 25.625 29.183 Atomic orbital electron populations 1.22231 0.96857 1.01289 1.02400 1.21379 0.93463 0.84446 1.02389 1.48266 1.64398 1.13134 1.07709 1.19238 0.96132 0.93680 0.78062 1.21380 0.96949 1.31937 1.06182 0.92698 1.24936 0.97803 0.94955 0.96440 1.69922 1.35688 1.33402 1.14318 0.86572 0.84898 0.78152 0.77863 1.20332 1.21157 1.20181 1.19993 0.79173 0.87141 0.84488 1.90690 1.44267 1.17603 1.86749 1.22721 1.02684 0.94863 0.92682 1.68810 1.06416 1.40845 1.00031 1.24453 0.93639 1.02398 0.93577 1.22693 0.92698 0.95639 0.87543 1.45879 1.48381 1.10904 1.31800 1.20226 0.79187 0.89392 0.81391 1.90833 1.59438 1.16651 1.71907 1.22875 1.01997 1.00005 0.98235 1.20600 0.81338 0.83852 0.87308 1.22806 1.03212 0.99526 0.99764 1.93067 1.61225 1.82782 1.80121 1.93052 1.75738 1.68811 1.79734 1.24318 0.98789 0.99274 0.91760 0.92267 0.93140 0.91933 0.89985 0.92203 0.95093 0.93905 0.92672 0.88498 0.91439 0.91033 0.88474 0.85059 0.76489 0.85806 0.85751 0.89086 0.89569 0.89138 0.88629 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.66 5.93 -4.05 -0.02 1.63 16 3 N -0.60 -12.60 2.46 -175.06 -0.43 -13.03 16 4 C 0.25 6.52 5.16 -5.19 -0.03 6.50 16 5 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 6 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 13 C 0.51 10.61 7.74 -10.98 -0.09 10.52 16 14 O -0.52 -13.54 16.01 5.56 0.09 -13.45 16 15 C 0.00 0.04 3.85 -4.97 -0.02 0.02 16 16 N -0.44 -6.30 5.82 -246.09 -1.43 -7.73 16 17 C -0.01 -0.14 7.53 -7.54 -0.06 -0.20 16 18 C 0.12 1.27 4.59 -67.72 -0.31 0.96 16 19 N -0.72 -5.55 5.39 -53.54 -0.29 -5.84 16 20 C 0.51 5.07 7.60 -10.99 -0.08 4.98 16 21 O -0.51 -7.81 14.43 5.56 0.08 -7.73 16 22 C -0.19 -1.03 5.30 -27.89 -0.15 -1.17 16 23 C 0.31 2.46 1.85 -26.73 -0.05 2.41 16 24 C -0.20 -0.75 9.38 37.16 0.35 -0.40 16 25 F -0.19 -2.24 16.14 2.25 0.04 -2.20 16 26 F -0.19 -2.14 16.14 2.25 0.04 -2.11 16 27 C -0.01 -0.11 7.45 -7.54 -0.06 -0.16 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.61 7.22 -51.93 -0.38 0.24 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.10 1.17 7.13 -51.93 -0.37 0.80 16 37 H 0.07 0.83 6.56 -51.93 -0.34 0.48 16 38 H 0.07 0.82 7.42 -51.93 -0.39 0.44 16 39 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 40 H 0.13 1.70 7.45 -51.93 -0.39 1.31 16 41 H 0.40 1.63 8.75 -40.82 -0.36 1.27 16 42 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 45 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.07 0.48 7.90 -51.93 -0.41 0.07 16 LS Contribution 403.83 15.07 6.09 6.09 Total: -1.00 -39.44 403.83 -8.19 -47.63 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.53 Total: -2.21 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -0.55 Total: 9.64 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -1.41 Total: -52.71 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: 0.17 Total: -21.18 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.07 Total: -4.31 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -39.44 -8.19 -47.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001373452504.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.702 kcal (2) G-P(sol) polarization free energy of solvation -39.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds