Wall clock time and date at job start Wed Apr 1 2020 04:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47235 * 59.99855 * 9 7 5 11 11 H 1.48500 * 109.47168 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47142 * 299.99797 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.47480 * 111.00171 * 265.96874 * 16 15 13 18 18 C 1.53513 * 87.93170 * 221.29782 * 17 16 15 19 19 N 1.46500 * 114.34228 * 139.68259 * 18 17 16 20 20 C 1.34783 * 120.00149 * 111.07310 * 19 18 17 21 21 O 1.21281 * 119.99388 * 0.02562 * 20 19 18 22 22 C 1.50692 * 120.00098 * 179.97438 * 20 19 18 23 23 C 1.53002 * 109.46933 * 180.02562 * 22 20 19 24 24 C 1.53000 * 109.47093 * 180.02562 * 23 22 20 25 25 F 1.39899 * 109.47347 * 300.00256 * 23 22 20 26 26 F 1.39897 * 109.47369 * 60.00248 * 23 22 20 27 27 C 1.47482 * 110.99764 * 169.99672 * 16 15 13 28 28 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 30 30 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 31 31 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 32 32 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 33 33 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 34 34 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 35 35 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 37 37 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 38 38 H 1.08999 * 113.47664 * 336.06792 * 17 16 15 39 39 H 1.08994 * 113.47488 * 106.52987 * 17 16 15 40 40 H 1.08999 * 114.16922 * 272.37539 * 18 17 16 41 41 H 0.96996 * 120.00166 * 291.08249 * 19 18 17 42 42 H 1.08996 * 109.47520 * 300.00136 * 22 20 19 43 43 H 1.09001 * 109.47143 * 60.00690 * 22 20 19 44 44 H 1.09001 * 109.47243 * 60.00196 * 24 23 22 45 45 H 1.08998 * 109.47091 * 179.97438 * 24 23 22 46 46 H 1.08996 * 109.47260 * 299.99740 * 24 23 22 47 47 H 1.08994 * 113.48196 * 253.46980 * 27 16 15 48 48 H 1.09003 * 113.47819 * 23.94188 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.1403 0.6387 -3.5947 11 1 6.1604 2.7947 -4.7040 12 1 6.8411 2.6188 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 3.6958 2.0024 4.0530 18 6 3.1733 2.1272 5.4910 19 7 3.7778 1.1861 6.4371 20 6 4.6030 1.6374 7.4025 21 8 4.8446 2.8228 7.4882 22 6 5.2243 0.6694 8.3759 23 6 6.1105 1.4347 9.3608 24 6 6.7419 0.4517 10.3488 25 9 7.1196 2.1023 8.6586 26 9 5.3347 2.3656 10.0599 27 6 1.8567 1.6375 4.8718 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 3.6747 3.5148 -4.4447 36 1 0.9443 1.0114 2.5302 37 1 2.6227 0.4186 2.5299 38 1 4.0915 1.0140 3.8190 39 1 4.3727 2.8069 3.7655 40 1 3.1371 3.1503 5.8655 41 1 3.5843 0.2381 6.3686 42 1 4.4381 0.1495 8.9234 43 1 5.8285 -0.0562 7.8312 44 1 7.3465 -0.2733 9.8038 45 1 7.3735 0.9969 11.0501 46 1 5.9559 -0.0687 10.8960 47 1 0.9750 2.1328 5.2783 48 1 1.7616 0.5517 4.8564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001373452504.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:17 Heat of formation + Delta-G solvation = -161.740966 kcal Electronic energy + Delta-G solvation = -30739.628460 eV Core-core repulsion = 26079.538535 eV Total energy + Delta-G solvation = -4660.089924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -49.84487 -47.87426 -41.82788 -40.58073 -39.73453 -36.88368 -35.26497 -34.89768 -34.13269 -31.86422 -31.31608 -29.62804 -28.79498 -27.00919 -26.11710 -24.60249 -23.87205 -23.00247 -21.68814 -21.23648 -19.95152 -18.64852 -18.56890 -18.47854 -18.09636 -17.94290 -17.33275 -16.91433 -16.77847 -16.67570 -16.36022 -16.11058 -15.89705 -15.17695 -15.00721 -14.73694 -14.64844 -14.49105 -14.29553 -14.23315 -13.87224 -13.73130 -13.71412 -13.57594 -13.42224 -13.25736 -13.14117 -13.07557 -13.04417 -12.88078 -12.64985 -12.50884 -12.37719 -12.15542 -11.99553 -11.90965 -11.79590 -11.73005 -11.09354 -10.65784 -10.58802 -10.15691 -9.83199 -9.40594 -8.23279 -6.38431 1.33602 1.38838 1.45753 1.50693 1.89317 1.90115 2.27781 2.41864 2.83761 3.03679 3.05910 3.19494 3.38181 3.48637 3.53406 3.67493 3.83742 3.97350 4.03148 4.09433 4.22654 4.30574 4.37704 4.39508 4.45014 4.46597 4.65453 4.66426 4.69328 4.76354 4.87373 4.90351 4.94795 5.01103 5.06263 5.08183 5.21798 5.26677 5.36980 5.41816 5.57472 5.84364 5.94532 6.06282 6.45917 6.70048 6.85750 7.19461 7.28221 7.57491 8.83445 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013701 B = 0.002098 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.165430 B =13344.225450 C =14612.056964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.263 3.737 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.004 3.996 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.256 1.256 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.493 3.507 14 O -0.588 6.588 15 C 0.020 3.980 16 N -0.484 5.484 17 C -0.014 4.014 18 C 0.127 3.873 19 N -0.696 5.696 20 C 0.503 3.497 21 O -0.580 6.580 22 C -0.178 4.178 23 C 0.280 3.720 24 C -0.186 4.186 25 F -0.221 7.221 26 F -0.218 7.218 27 C 0.010 3.990 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.021 0.979 34 H -0.010 1.010 35 H 0.267 0.733 36 H 0.132 0.868 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.048 0.952 40 H 0.097 0.903 41 H 0.425 0.575 42 H 0.167 0.833 43 H 0.161 0.839 44 H 0.112 0.888 45 H 0.076 0.924 46 H 0.116 0.884 47 H 0.103 0.897 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 -19.767 28.488 34.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.141 3.859 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.195 4.195 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.180 1.180 11 H -0.204 1.204 12 H -0.206 1.206 13 C 0.281 3.719 14 O -0.468 6.468 15 C -0.111 4.111 16 N -0.207 5.207 17 C -0.144 4.144 18 C 0.021 3.979 19 N -0.350 5.350 20 C 0.290 3.710 21 O -0.459 6.459 22 C -0.218 4.218 23 C 0.244 3.756 24 C -0.243 4.243 25 F -0.202 7.202 26 F -0.199 7.199 27 C -0.118 4.118 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.039 0.961 34 H 0.008 0.992 35 H 0.075 0.925 36 H 0.150 0.850 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.115 0.885 41 H 0.264 0.736 42 H 0.185 0.815 43 H 0.178 0.822 44 H 0.131 0.869 45 H 0.095 0.905 46 H 0.135 0.865 47 H 0.121 0.879 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.453 -17.569 28.109 33.180 hybrid contribution 1.102 0.013 -1.098 1.556 sum -0.351 -17.556 27.011 32.217 Atomic orbital electron populations 1.22165 0.94624 1.03542 1.01611 1.21761 0.95268 0.81177 1.04005 1.48312 1.64345 1.15221 1.06037 1.18642 0.95224 0.91302 0.80687 1.21670 0.97882 1.31958 1.06379 0.92878 1.25901 1.02471 0.94543 0.96551 1.70054 1.37838 1.34244 1.14772 0.85471 0.78903 0.79186 0.77267 1.18049 1.20381 1.20615 1.21320 0.77399 0.86684 0.86486 1.90655 1.47292 1.20903 1.87915 1.22651 1.05344 0.94574 0.88524 1.68712 1.07193 1.42740 1.02052 1.24473 0.92833 1.01840 0.95281 1.22253 0.93840 0.95132 0.86722 1.45645 1.47293 1.11649 1.30374 1.21140 0.78608 0.89338 0.81880 1.90818 1.61652 1.19761 1.73648 1.22991 1.02906 0.98843 0.97037 1.21514 0.81420 0.83865 0.88785 1.22823 1.03953 0.98658 0.98891 1.93003 1.62595 1.83684 1.80963 1.92995 1.76427 1.70151 1.80350 1.24319 0.97692 1.01777 0.88039 0.88364 0.91975 0.94757 0.91191 0.87718 0.96085 0.99215 0.92452 0.85047 0.87984 0.88618 0.93291 0.88508 0.73634 0.81542 0.82173 0.86901 0.90479 0.86505 0.87880 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 10.24 71.98 0.74 -2.93 16 2 C 0.10 2.83 5.93 86.38 0.51 3.34 16 3 N -0.61 -25.60 2.46 -826.16 -2.03 -27.63 16 4 C 0.26 14.58 5.16 85.64 0.44 15.02 16 5 C -0.54 -31.77 9.39 25.60 0.24 -31.53 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.00 0.24 5.46 84.65 0.46 0.71 16 8 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 9 Si 0.97 45.83 29.54 68.60 2.03 47.86 16 10 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 13 C 0.49 20.76 7.74 87.66 0.68 21.44 16 14 O -0.59 -32.54 16.01 -3.03 -0.05 -32.59 16 15 C 0.02 0.52 3.85 85.56 0.33 0.85 16 16 N -0.48 -13.23 5.82 -932.48 -5.43 -18.66 16 17 C -0.01 -0.36 7.53 83.58 0.63 0.27 16 18 C 0.13 2.57 4.59 45.45 0.21 2.78 16 19 N -0.70 -8.83 5.39 -441.69 -2.38 -11.21 16 20 C 0.50 9.25 7.60 87.65 0.67 9.91 16 21 O -0.58 -18.42 14.43 -3.03 -0.04 -18.46 16 22 C -0.18 -1.32 5.30 29.85 0.16 -1.16 16 23 C 0.28 4.15 1.85 30.59 0.06 4.21 16 24 C -0.19 -0.91 9.38 71.98 0.68 -0.23 16 25 F -0.22 -5.30 16.14 44.97 0.73 -4.58 16 26 F -0.22 -4.90 16.14 44.97 0.73 -4.17 16 27 C 0.01 0.16 7.45 83.58 0.62 0.78 16 28 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.06 1.27 7.22 -2.39 -0.02 1.26 16 30 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 2.16 8.07 -2.38 -0.02 2.14 16 32 H 0.10 2.04 6.44 -2.39 -0.02 2.03 16 33 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 34 H -0.01 -0.67 7.42 -2.39 -0.02 -0.69 16 35 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.13 2.48 7.13 -2.39 -0.02 2.46 16 37 H 0.10 1.93 6.56 -2.39 -0.02 1.92 16 38 H 0.10 1.94 7.42 -2.39 -0.02 1.92 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.10 2.68 7.45 -2.39 -0.02 2.66 16 41 H 0.42 1.24 8.75 -92.71 -0.81 0.43 16 42 H 0.17 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.16 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 48 H 0.12 0.76 7.90 -2.39 -0.02 0.74 16 Total: -1.00 -99.34 403.83 0.42 -98.92 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 0.17 Total: 4.48 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 6.42 Total: 23.47 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -9.55 Total: -114.92 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -0.09 Total: -51.06 kcal Atomic # 9 Polarization: -10.20 SS G_CDS: 1.45 Total: -8.75 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -99.34 0.42 -98.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001373452504.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.821 kcal (2) G-P(sol) polarization free energy of solvation -99.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds