Wall clock time and date at job start Wed Apr 1 2020 04:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46499 * 109.47595 * 2 1 4 4 C 1.46498 * 120.00515 * 270.00348 * 3 2 1 5 5 C 1.50699 * 109.47102 * 269.99985 * 4 3 2 6 6 H 1.08007 * 120.00168 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00383 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99865 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00431 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47146 * 89.99990 * 9 7 5 11 11 H 1.48493 * 109.47258 * 209.99891 * 9 7 5 12 12 H 1.48500 * 109.46709 * 329.99983 * 9 7 5 13 13 C 1.34784 * 120.00093 * 89.99728 * 3 2 1 14 14 O 1.21279 * 120.00237 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99676 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.46913 * 179.97438 * 15 13 3 17 17 C 1.47446 * 110.99969 * 55.55834 * 16 15 13 18 18 C 1.54317 * 107.22945 * 123.25871 * 17 16 15 19 19 C 1.55142 * 103.01992 * 22.28451 * 18 17 16 20 20 C 1.47840 * 110.99936 * 176.40384 * 16 15 13 21 21 H 1.08996 * 110.37282 * 332.57738 * 20 16 15 22 22 C 1.53006 * 110.37250 * 94.80782 * 20 16 15 23 23 N 1.46493 * 109.47152 * 298.45406 * 22 20 16 24 24 C 1.34780 * 120.00359 * 173.46088 * 23 22 20 25 25 O 1.21285 * 119.99687 * 359.97438 * 24 23 22 26 26 C 1.50698 * 120.00238 * 179.72457 * 24 23 22 27 27 F 1.39900 * 109.47109 * 185.27017 * 26 24 23 28 28 F 1.39897 * 109.46962 * 305.27357 * 26 24 23 29 29 H 1.09000 * 109.47269 * 300.00157 * 1 2 3 30 30 H 1.08999 * 109.47320 * 59.99479 * 1 2 3 31 31 H 1.08995 * 109.47415 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47269 * 239.99843 * 2 1 3 33 33 H 1.09007 * 109.47408 * 120.00207 * 2 1 3 34 34 H 1.09006 * 109.46757 * 29.99428 * 4 3 2 35 35 H 1.08995 * 109.47643 * 149.99575 * 4 3 2 36 36 H 0.97000 * 120.00654 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.46991 * 60.00152 * 15 13 3 38 38 H 1.08993 * 109.47391 * 300.00145 * 15 13 3 39 39 H 1.08997 * 109.88789 * 242.66357 * 17 16 15 40 40 H 1.08999 * 109.88784 * 3.69407 * 17 16 15 41 41 H 1.08996 * 110.70511 * 140.66916 * 18 17 16 42 42 H 1.09005 * 110.70311 * 263.90556 * 18 17 16 43 43 H 1.09006 * 110.98916 * 206.25877 * 19 18 17 44 44 H 1.09003 * 110.99214 * 82.43981 * 19 18 17 45 45 H 1.08996 * 109.46972 * 178.45516 * 22 20 16 46 46 H 1.08995 * 109.47251 * 58.45440 * 22 20 16 47 47 H 0.97005 * 119.99974 * 353.45945 * 23 22 20 48 48 H 1.09002 * 109.46785 * 65.27305 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1492 2.3896 -2.8779 8 7 3.3490 3.1250 -3.6184 9 14 5.9136 2.0966 -3.4168 10 1 5.9775 0.8753 -4.2592 11 1 6.3922 3.2638 -4.2002 12 1 6.7736 1.9178 -2.2195 13 6 2.2430 2.0166 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9922 1.3059 2.4724 16 7 2.3109 2.2057 3.5889 17 6 1.5524 3.4659 3.4851 18 6 0.7502 3.6256 4.7936 19 6 1.5356 2.7390 5.7956 20 6 1.9955 1.5719 4.8868 21 1 1.1942 0.8426 4.7681 22 6 3.2418 0.9024 5.4694 23 7 3.7023 -0.1488 4.5589 24 6 4.8639 -0.7882 4.8002 25 8 5.5284 -0.4930 5.7709 26 6 5.3345 -1.8739 3.8669 27 9 6.4914 -2.4655 4.3854 28 9 4.3337 -2.8426 3.7362 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6878 -2.0283 35 1 2.0956 3.1411 -1.1383 36 1 3.6748 3.5150 -4.4447 37 1 2.6227 0.4187 2.5299 38 1 0.9445 1.0114 2.5303 39 1 2.2396 4.3036 3.3667 40 1 0.8730 3.4206 2.6340 41 1 0.7475 4.6658 5.1194 42 1 -0.2680 3.2570 4.6689 43 1 0.8846 2.3799 6.5927 44 1 2.3915 3.2761 6.2046 45 1 2.9997 0.4640 6.4376 46 1 4.0291 1.6458 5.5938 47 1 3.1710 -0.3847 3.7823 48 1 5.5533 -1.4433 2.8897 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001377393387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:47 Heat of formation + Delta-G solvation = -156.341560 kcal Electronic energy + Delta-G solvation = -32440.216689 eV Core-core repulsion = 27780.360901 eV Total energy + Delta-G solvation = -4659.855789 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.38967 -47.41279 -40.40607 -39.50736 -38.30197 -35.44977 -34.97447 -32.99083 -32.23415 -30.75635 -30.18501 -28.20004 -27.94109 -26.03560 -24.79143 -23.12800 -22.59891 -21.68290 -20.92069 -20.57763 -18.66988 -18.35323 -18.04462 -17.71341 -16.95731 -16.44821 -16.25459 -16.00305 -15.86900 -15.25103 -15.07693 -14.86100 -14.69335 -14.28672 -14.21654 -13.91052 -13.74193 -13.52888 -13.42364 -13.35855 -13.08899 -12.74457 -12.50536 -12.38839 -12.28377 -12.13951 -11.93322 -11.71762 -11.56413 -11.42853 -11.25059 -11.13824 -10.96961 -10.84789 -10.77326 -10.58499 -10.20976 -10.17301 -9.68433 -9.47928 -8.95068 -8.47966 -8.37386 -7.74533 -6.08962 -4.13833 1.92055 2.32189 3.25759 3.27474 3.34801 3.38957 3.49234 3.59711 3.81861 3.96357 4.30632 4.37740 4.41678 4.43856 4.46105 4.73502 4.82003 4.97216 5.01180 5.09187 5.18470 5.25602 5.29220 5.29754 5.37154 5.51622 5.56675 5.60513 5.64782 5.74224 5.79976 5.90902 5.94238 6.01894 6.12315 6.31097 6.35573 6.80041 6.86927 6.89682 7.04263 7.37287 7.47073 7.57894 7.87024 8.17799 8.32577 8.84403 9.01408 9.51657 10.99099 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.007856 B = 0.003982 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3563.383666 B = 7030.422769 C = 8962.154496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.504 3.496 14 O -0.520 6.520 15 C 0.030 3.970 16 N -0.507 5.507 17 C 0.059 3.941 18 C -0.146 4.146 19 C -0.117 4.117 20 C 0.055 3.945 21 H 0.063 0.937 22 C 0.135 3.865 23 N -0.706 5.706 24 C 0.474 3.526 25 O -0.505 6.505 26 C 0.255 3.745 27 F -0.176 7.176 28 F -0.189 7.189 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.403 0.597 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.314 -8.169 16.727 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.289 3.711 14 O -0.396 6.396 15 C -0.102 4.102 16 N -0.231 5.231 17 C -0.068 4.068 18 C -0.184 4.184 19 C -0.155 4.155 20 C -0.054 4.054 21 H 0.081 0.919 22 C 0.011 3.989 23 N -0.361 5.361 24 C 0.255 3.745 25 O -0.379 6.379 26 C 0.198 3.802 27 F -0.157 7.157 28 F -0.170 7.170 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.241 0.759 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.085 -7.145 17.209 19.602 hybrid contribution -0.140 -0.745 -0.943 1.210 sum -6.225 -7.890 16.266 19.120 Atomic orbital electron populations 1.22224 0.96776 1.01501 1.02267 1.21414 0.93527 0.84334 1.02579 1.48275 1.63895 1.13190 1.07701 1.19257 0.96298 0.93565 0.77944 1.21400 0.96859 1.31994 1.06226 0.92531 1.24921 0.97814 0.94864 0.96405 1.69922 1.35721 1.33407 1.14292 0.86515 0.84692 0.77710 0.78626 1.20640 1.21082 1.19881 1.20001 0.79207 0.87221 0.84638 1.90697 1.44525 1.17708 1.86688 1.22412 0.99923 0.96261 0.91597 1.63330 1.56261 1.03929 0.99624 1.22736 0.95685 0.92601 0.95745 1.22893 0.98883 1.00738 0.95905 1.22636 1.00464 0.95321 0.97119 1.22903 0.95306 0.96562 0.90636 0.91867 1.21537 0.96588 0.89078 0.91678 1.46073 1.22142 1.38034 1.29855 1.21003 0.82469 0.84149 0.86844 1.90810 1.54442 1.65027 1.27642 1.21715 0.75397 0.83854 0.99274 1.93058 1.48696 1.84882 1.89059 1.93047 1.61246 1.65829 1.96923 0.93326 0.91902 0.92060 0.89709 0.92170 0.95066 0.93949 0.92698 0.89613 0.92200 0.89385 0.92308 0.90424 0.91658 0.90488 0.89960 0.90751 0.89603 0.75931 0.84174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 37.15 0.38 -1.60 16 2 C 0.11 1.49 5.93 -4.05 -0.02 1.46 16 3 N -0.60 -11.45 2.46 -175.06 -0.43 -11.88 16 4 C 0.25 6.14 5.16 -5.20 -0.03 6.11 16 5 C -0.53 -14.32 9.39 -34.44 -0.32 -14.64 16 6 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 9 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 13 C 0.50 9.43 6.99 -10.98 -0.08 9.35 16 14 O -0.52 -12.06 13.97 5.56 0.08 -11.98 16 15 C 0.03 0.38 3.58 -4.97 -0.02 0.36 16 16 N -0.51 -6.39 4.70 -224.82 -1.06 -7.44 16 17 C 0.06 0.78 5.14 -2.83 -0.01 0.76 16 18 C -0.15 -1.33 6.94 -24.91 -0.17 -1.50 16 19 C -0.12 -0.92 6.49 -24.59 -0.16 -1.08 16 20 C 0.05 0.50 2.68 -66.19 -0.18 0.32 16 21 H 0.06 0.49 7.72 -51.93 -0.40 0.09 16 22 C 0.13 1.30 5.39 -4.04 -0.02 1.27 16 23 N -0.71 -7.08 5.35 -60.30 -0.32 -7.40 16 24 C 0.47 5.65 7.63 -10.98 -0.08 5.57 16 25 O -0.51 -7.85 16.60 5.55 0.09 -7.76 16 26 C 0.25 2.56 5.72 36.00 0.21 2.77 16 27 F -0.18 -2.19 16.95 2.25 0.04 -2.15 16 28 F -0.19 -1.87 17.32 2.25 0.04 -1.84 16 29 H 0.05 0.53 7.22 -51.93 -0.38 0.16 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.06 0.65 6.44 -51.92 -0.33 0.32 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.09 0.94 4.61 -51.93 -0.24 0.70 16 38 H 0.06 0.65 7.05 -51.93 -0.37 0.28 16 39 H 0.09 1.35 8.00 -51.93 -0.42 0.93 16 40 H 0.06 0.87 6.61 -51.93 -0.34 0.53 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 47 H 0.40 3.46 5.48 -40.82 -0.22 3.23 16 48 H 0.14 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 394.22 15.07 5.94 5.94 Total: -1.00 -34.53 394.22 -7.78 -42.31 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.27 Total: 0.22 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -0.61 Total: 10.80 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -1.07 Total: -51.95 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.17 Total: -19.73 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.08 Total: -3.98 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.53 -7.78 -42.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001377393387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.035 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds