Wall clock time and date at job start Wed Apr 1 2020 04:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46499 * 109.47595 * 2 1 4 4 C 1.46498 * 120.00515 * 270.00348 * 3 2 1 5 5 C 1.50699 * 109.47102 * 269.99985 * 4 3 2 6 6 H 1.08007 * 120.00168 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00383 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99865 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00431 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47146 * 89.99990 * 9 7 5 11 11 H 1.48493 * 109.47258 * 209.99891 * 9 7 5 12 12 H 1.48500 * 109.46709 * 329.99983 * 9 7 5 13 13 C 1.34784 * 120.00093 * 89.99728 * 3 2 1 14 14 O 1.21279 * 120.00237 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99676 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.46913 * 179.97438 * 15 13 3 17 17 C 1.47446 * 110.99969 * 55.55834 * 16 15 13 18 18 C 1.54317 * 107.22945 * 123.25871 * 17 16 15 19 19 C 1.55142 * 103.01992 * 22.28451 * 18 17 16 20 20 C 1.47840 * 110.99936 * 176.40384 * 16 15 13 21 21 H 1.08996 * 110.37282 * 332.57738 * 20 16 15 22 22 C 1.53006 * 110.37250 * 94.80782 * 20 16 15 23 23 N 1.46493 * 109.47152 * 298.45406 * 22 20 16 24 24 C 1.34780 * 120.00359 * 173.46088 * 23 22 20 25 25 O 1.21285 * 119.99687 * 359.97438 * 24 23 22 26 26 C 1.50698 * 120.00238 * 179.72457 * 24 23 22 27 27 F 1.39900 * 109.47109 * 185.27017 * 26 24 23 28 28 F 1.39897 * 109.46962 * 305.27357 * 26 24 23 29 29 H 1.09000 * 109.47269 * 300.00157 * 1 2 3 30 30 H 1.08999 * 109.47320 * 59.99479 * 1 2 3 31 31 H 1.08995 * 109.47415 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47269 * 239.99843 * 2 1 3 33 33 H 1.09007 * 109.47408 * 120.00207 * 2 1 3 34 34 H 1.09006 * 109.46757 * 29.99428 * 4 3 2 35 35 H 1.08995 * 109.47643 * 149.99575 * 4 3 2 36 36 H 0.97000 * 120.00654 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.46991 * 60.00152 * 15 13 3 38 38 H 1.08993 * 109.47391 * 300.00145 * 15 13 3 39 39 H 1.08997 * 109.88789 * 242.66357 * 17 16 15 40 40 H 1.08999 * 109.88784 * 3.69407 * 17 16 15 41 41 H 1.08996 * 110.70511 * 140.66916 * 18 17 16 42 42 H 1.09005 * 110.70311 * 263.90556 * 18 17 16 43 43 H 1.09006 * 110.98916 * 206.25877 * 19 18 17 44 44 H 1.09003 * 110.99214 * 82.43981 * 19 18 17 45 45 H 1.08996 * 109.46972 * 178.45516 * 22 20 16 46 46 H 1.08995 * 109.47251 * 58.45440 * 22 20 16 47 47 H 0.97005 * 119.99974 * 353.45945 * 23 22 20 48 48 H 1.09002 * 109.46785 * 65.27305 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1492 2.3896 -2.8779 8 7 3.3490 3.1250 -3.6184 9 14 5.9136 2.0966 -3.4168 10 1 5.9775 0.8753 -4.2592 11 1 6.3922 3.2638 -4.2002 12 1 6.7736 1.9178 -2.2195 13 6 2.2430 2.0166 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9922 1.3059 2.4724 16 7 2.3109 2.2057 3.5889 17 6 1.5524 3.4659 3.4851 18 6 0.7502 3.6256 4.7936 19 6 1.5356 2.7390 5.7956 20 6 1.9955 1.5719 4.8868 21 1 1.1942 0.8426 4.7681 22 6 3.2418 0.9024 5.4694 23 7 3.7023 -0.1488 4.5589 24 6 4.8639 -0.7882 4.8002 25 8 5.5284 -0.4930 5.7709 26 6 5.3345 -1.8739 3.8669 27 9 6.4914 -2.4655 4.3854 28 9 4.3337 -2.8426 3.7362 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6878 -2.0283 35 1 2.0956 3.1411 -1.1383 36 1 3.6748 3.5150 -4.4447 37 1 2.6227 0.4187 2.5299 38 1 0.9445 1.0114 2.5303 39 1 2.2396 4.3036 3.3667 40 1 0.8730 3.4206 2.6340 41 1 0.7475 4.6658 5.1194 42 1 -0.2680 3.2570 4.6689 43 1 0.8846 2.3799 6.5927 44 1 2.3915 3.2761 6.2046 45 1 2.9997 0.4640 6.4376 46 1 4.0291 1.6458 5.5938 47 1 3.1710 -0.3847 3.7823 48 1 5.5533 -1.4433 2.8897 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001377393387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:40 Heat of formation + Delta-G solvation = -181.966226 kcal Electronic energy + Delta-G solvation = -32441.327858 eV Core-core repulsion = 27780.360901 eV Total energy + Delta-G solvation = -4660.966957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.20311 -48.23893 -41.44219 -40.63102 -39.44307 -36.92374 -35.91730 -34.93020 -33.30982 -31.62100 -31.53089 -29.51204 -29.01058 -27.40990 -25.74152 -24.67698 -23.94941 -22.59598 -21.75058 -21.44445 -19.82192 -19.45997 -18.83402 -18.58996 -18.54819 -17.97304 -17.40176 -17.16866 -16.90732 -16.57056 -16.17733 -16.02614 -15.76795 -15.68733 -15.04574 -14.83269 -14.71230 -14.59453 -14.56788 -14.51162 -14.27925 -13.88631 -13.66202 -13.50890 -13.32714 -13.22801 -13.13958 -13.05101 -12.92995 -12.65832 -12.47255 -12.39346 -12.26192 -12.14952 -12.00969 -11.78615 -11.68842 -11.57856 -11.11892 -10.62922 -10.49696 -10.30110 -9.41768 -9.29513 -8.21204 -6.35342 1.02277 1.36719 1.39833 1.49204 1.50206 1.86120 2.23017 2.41208 2.82984 2.90359 3.03780 3.08949 3.52524 3.53472 3.68214 3.71833 3.78718 3.97381 4.07694 4.17819 4.20515 4.26297 4.31733 4.46174 4.56926 4.60375 4.65618 4.75610 4.89916 4.95831 5.00861 5.01926 5.08027 5.10474 5.11387 5.22928 5.24493 5.37934 5.40619 5.59844 5.84951 5.90513 6.03526 6.08169 6.08535 6.73134 6.74538 6.84688 7.31136 7.54411 8.85600 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.007856 B = 0.003982 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3563.383666 B = 7030.422769 C = 8962.154496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.603 5.603 4 C 0.265 3.735 5 C -0.537 4.537 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.963 3.037 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.494 3.506 14 O -0.578 6.578 15 C 0.045 3.955 16 N -0.530 5.530 17 C 0.062 3.938 18 C -0.136 4.136 19 C -0.110 4.110 20 C 0.061 3.939 21 H 0.093 0.907 22 C 0.134 3.866 23 N -0.696 5.696 24 C 0.471 3.529 25 O -0.549 6.549 26 C 0.258 3.742 27 F -0.192 7.192 28 F -0.185 7.185 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.020 0.980 35 H -0.007 1.007 36 H 0.266 0.734 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.034 0.966 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.063 0.937 47 H 0.411 0.589 48 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 -10.812 18.391 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.335 5.335 4 C 0.144 3.856 5 C -0.576 4.576 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.788 3.212 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.197 1.197 13 C 0.282 3.718 14 O -0.457 6.457 15 C -0.086 4.086 16 N -0.255 5.255 17 C -0.065 4.065 18 C -0.174 4.174 19 C -0.149 4.149 20 C -0.047 4.047 21 H 0.110 0.890 22 C 0.011 3.989 23 N -0.350 5.350 24 C 0.253 3.747 25 O -0.426 6.426 26 C 0.201 3.799 27 F -0.173 7.173 28 F -0.167 7.167 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.038 0.962 35 H 0.011 0.989 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.127 0.873 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.081 0.919 47 H 0.251 0.749 48 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.971 -9.845 18.876 22.401 hybrid contribution 0.068 0.117 -1.469 1.475 sum -6.903 -9.728 17.407 21.102 Atomic orbital electron populations 1.22161 0.94746 1.03538 1.01548 1.21782 0.95200 0.81354 1.04161 1.48271 1.64074 1.15120 1.06062 1.18638 0.95131 0.91375 0.80505 1.21711 0.97905 1.31719 1.06266 0.92650 1.25813 1.02065 0.94578 0.96601 1.70047 1.37719 1.34416 1.14778 0.85476 0.79379 0.78101 0.78232 1.18766 1.21070 1.19746 1.21091 0.77659 0.86802 0.86258 1.90675 1.46944 1.20440 1.87674 1.22323 1.02355 0.95876 0.88021 1.63216 1.57145 1.04074 1.01072 1.22534 0.94824 0.91992 0.97180 1.22828 0.99142 1.01617 0.93815 1.22661 1.00568 0.94406 0.97218 1.22987 0.95691 0.97302 0.88751 0.88950 1.21587 0.96148 0.88607 0.92551 1.46052 1.21531 1.37426 1.29952 1.21366 0.82429 0.84410 0.86505 1.90793 1.55744 1.66539 1.29561 1.21908 0.74772 0.83296 0.99925 1.93025 1.49701 1.85147 1.89419 1.93054 1.61050 1.65682 1.96879 0.92150 0.94592 0.88525 0.90885 0.87808 0.96227 0.98856 0.92557 0.87089 0.88886 0.93248 0.94730 0.90041 0.89959 0.87341 0.90619 0.88910 0.91879 0.74900 0.80942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 10.24 71.98 0.74 -2.63 16 2 C 0.10 2.51 5.93 86.38 0.51 3.03 16 3 N -0.60 -23.23 2.46 -826.15 -2.03 -25.26 16 4 C 0.27 13.75 5.16 85.63 0.44 14.19 16 5 C -0.54 -30.00 9.39 25.60 0.24 -29.76 16 6 H 0.06 3.03 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 9 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 13 C 0.49 18.56 6.99 87.66 0.61 19.17 16 14 O -0.58 -28.22 13.97 -3.03 -0.04 -28.27 16 15 C 0.05 1.04 3.58 85.56 0.31 1.35 16 16 N -0.53 -12.52 4.70 -865.19 -4.07 -16.59 16 17 C 0.06 1.64 5.14 86.65 0.45 2.09 16 18 C -0.14 -2.19 6.94 31.78 0.22 -1.97 16 19 C -0.11 -1.38 6.49 31.98 0.21 -1.17 16 20 C 0.06 0.89 2.68 45.39 0.12 1.01 16 21 H 0.09 0.90 7.72 -2.39 -0.02 0.88 16 22 C 0.13 2.23 5.39 86.38 0.47 2.70 16 23 N -0.70 -11.89 5.35 -463.07 -2.48 -14.37 16 24 C 0.47 10.32 7.63 87.66 0.67 10.98 16 25 O -0.55 -16.65 16.60 -3.05 -0.05 -16.70 16 26 C 0.26 4.55 5.72 71.24 0.41 4.96 16 27 F -0.19 -4.50 16.95 44.97 0.76 -3.74 16 28 F -0.19 -3.09 17.32 44.97 0.78 -2.31 16 29 H 0.06 1.12 7.22 -2.39 -0.02 1.10 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 33 H 0.10 1.78 6.44 -2.38 -0.02 1.76 16 34 H 0.02 1.05 8.07 -2.38 -0.02 1.03 16 35 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 36 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.11 1.96 4.61 -2.39 -0.01 1.95 16 38 H 0.09 1.58 7.05 -2.39 -0.02 1.56 16 39 H 0.05 1.64 8.00 -2.39 -0.02 1.62 16 40 H 0.03 1.05 6.61 -2.39 -0.02 1.03 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.08 1.07 8.06 -2.39 -0.02 1.05 16 45 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.06 1.38 8.11 -2.39 -0.02 1.36 16 47 H 0.41 5.36 5.48 -92.70 -0.51 4.85 16 48 H 0.17 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -81.95 394.22 1.51 -80.44 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.47 Total: 10.96 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 5.85 Total: 24.87 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -8.29 Total: -111.60 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -0.09 Total: -44.97 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 1.54 Total: -6.05 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -81.95 1.51 -80.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001377393387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.525 kcal (2) G-P(sol) polarization free energy of solvation -81.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds