Wall clock time and date at job start Wed Apr 1 2020 04:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47495 * 2 1 4 4 C 1.46502 * 119.99822 * 270.00411 * 3 2 1 5 5 C 1.50697 * 109.47261 * 269.99867 * 4 3 2 6 6 H 1.08002 * 120.00012 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00153 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99846 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99889 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46912 * 90.00020 * 9 7 5 11 11 H 1.48494 * 109.46681 * 209.99619 * 9 7 5 12 12 H 1.48490 * 109.47290 * 329.99816 * 9 7 5 13 13 C 1.34772 * 119.99952 * 89.99890 * 3 2 1 14 14 O 1.21289 * 119.99510 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00155 * 0.02562 * 13 3 2 16 16 N 1.46908 * 109.47129 * 179.97438 * 15 13 3 17 17 C 1.48530 * 110.99944 * 307.40180 * 16 15 13 18 18 C 1.54943 * 103.22323 * 200.27674 * 17 16 15 19 19 C 1.54595 * 102.92356 * 37.41485 * 18 17 16 20 20 H 1.08996 * 110.39309 * 96.99632 * 19 18 17 21 21 N 1.46497 * 110.30799 * 219.12800 * 19 18 17 22 22 C 1.46496 * 120.00129 * 55.71621 * 21 19 18 23 23 C 1.34777 * 119.99525 * 235.71128 * 21 19 18 24 24 O 1.21283 * 120.00463 * 0.02562 * 23 21 19 25 25 C 1.50700 * 119.99675 * 179.72583 * 23 21 19 26 26 F 1.39898 * 109.47431 * 55.27777 * 25 23 21 27 27 F 1.39900 * 109.47316 * 175.27886 * 25 23 21 28 28 C 1.47900 * 111.00088 * 190.00183 * 16 15 13 29 29 H 1.09001 * 109.46929 * 299.99737 * 1 2 3 30 30 H 1.08997 * 109.47365 * 59.99794 * 1 2 3 31 31 H 1.08999 * 109.46860 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47214 * 239.99892 * 2 1 3 33 33 H 1.08997 * 109.47365 * 120.00205 * 2 1 3 34 34 H 1.09012 * 109.47212 * 29.99877 * 4 3 2 35 35 H 1.09004 * 109.47194 * 149.99270 * 4 3 2 36 36 H 0.96995 * 120.00010 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47164 * 60.00140 * 15 13 3 38 38 H 1.08996 * 109.47583 * 300.00098 * 15 13 3 39 39 H 1.09000 * 110.66945 * 318.70783 * 17 16 15 40 40 H 1.08998 * 110.67166 * 81.67639 * 17 16 15 41 41 H 1.08998 * 110.72446 * 279.05407 * 18 17 16 42 42 H 1.09001 * 110.72340 * 155.77313 * 18 17 16 43 43 H 1.08997 * 109.47115 * 269.99822 * 22 21 19 44 44 H 1.08995 * 109.47364 * 30.00213 * 22 21 19 45 45 H 1.09002 * 109.47090 * 149.99764 * 22 21 19 46 46 H 1.09004 * 109.47439 * 295.27683 * 25 23 21 47 47 H 1.09005 * 109.91596 * 26.49304 * 28 16 15 48 48 H 1.08996 * 109.91975 * 265.20340 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8349 -1.7039 6 1 4.3429 1.2308 -1.0960 7 6 4.1493 2.3904 -2.8777 8 7 3.3492 3.1265 -3.6177 9 14 5.9137 2.0974 -3.4166 10 1 5.9774 0.8766 -4.2599 11 1 6.3925 3.2650 -4.1992 12 1 6.7736 1.9175 -2.2195 13 6 2.2430 2.0165 1.1672 14 8 2.6470 3.1601 1.1671 15 6 1.9924 1.3060 2.4722 16 7 2.3111 2.2059 3.5888 17 6 3.6783 2.7683 3.4456 18 6 4.0277 3.2217 4.8854 19 6 3.3949 2.1148 5.7596 20 1 4.1443 1.3723 6.0336 21 7 2.7943 2.6977 6.9620 22 6 1.7892 3.7564 6.8393 23 6 3.1665 2.2598 8.1811 24 8 3.9989 1.3836 8.2827 25 6 2.5533 2.8637 9.4182 26 9 1.1600 2.7617 9.3454 27 9 3.0126 2.1788 10.5483 28 6 2.3080 1.4761 4.8752 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5816 1.6877 -2.0285 35 1 2.0955 3.1410 -1.1385 36 1 3.6752 3.5169 -4.4436 37 1 2.6229 0.4187 2.5298 38 1 0.9446 1.0114 2.5302 39 1 4.3752 2.0031 3.1035 40 1 3.6754 3.6174 2.7622 41 1 3.5784 4.1903 5.1044 42 1 5.1078 3.2554 5.0278 43 1 2.2833 4.7279 6.8365 44 1 1.2369 3.6269 5.9086 45 1 1.0995 3.7020 7.6816 46 1 2.8375 3.9136 9.4893 47 1 2.5379 0.4241 4.7059 48 1 1.3342 1.5735 5.3550 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001378137383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:13 Heat of formation + Delta-G solvation = -140.257561 kcal Electronic energy + Delta-G solvation = -31625.036133 eV Core-core repulsion = 26965.877799 eV Total energy + Delta-G solvation = -4659.158334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.68194 -47.69289 -40.64022 -39.49692 -38.09033 -35.75273 -35.15922 -32.88956 -31.80764 -30.13708 -29.30670 -28.32706 -27.89443 -26.88964 -25.56427 -23.09005 -22.60150 -21.82781 -21.23492 -19.89300 -18.79692 -18.37566 -18.14158 -17.72709 -16.94046 -16.58252 -16.30942 -16.06550 -15.75938 -15.36619 -14.89792 -14.84584 -14.44658 -14.36143 -14.16704 -14.10244 -13.86131 -13.56995 -13.42067 -13.37395 -12.81193 -12.64887 -12.55735 -12.51482 -12.36657 -12.13815 -12.04404 -11.97909 -11.74805 -11.51173 -11.33575 -11.16217 -10.97494 -10.86713 -10.67089 -10.55444 -10.30195 -10.12348 -9.66855 -9.23253 -8.83135 -8.46822 -8.34620 -7.69583 -6.07580 -4.12439 1.68484 2.07133 3.23688 3.27027 3.33155 3.35258 3.40110 3.46066 3.64573 4.06496 4.13095 4.18020 4.40186 4.46081 4.52664 4.71022 4.88375 4.98744 5.09291 5.18563 5.20155 5.25406 5.27847 5.36996 5.43745 5.47799 5.54057 5.58456 5.62239 5.75182 5.77746 5.97566 6.00128 6.05742 6.19223 6.36049 6.44882 6.67691 6.84711 6.88403 7.08380 7.33844 7.42183 7.52317 7.88893 8.20173 8.38797 8.86908 9.06870 9.52810 11.00400 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018827 B = 0.002244 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.839189 B =12473.039950 C =13198.142711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.597 5.597 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.507 3.493 14 O -0.528 6.528 15 C 0.026 3.974 16 N -0.497 5.497 17 C 0.034 3.966 18 C -0.133 4.133 19 C 0.128 3.872 20 H 0.109 0.891 21 N -0.587 5.587 22 C 0.047 3.953 23 C 0.472 3.528 24 O -0.506 6.506 25 C 0.260 3.740 26 F -0.184 7.184 27 F -0.176 7.176 28 C 0.024 3.976 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.042 0.958 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.137 0.863 47 H 0.054 0.946 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.554 -1.686 22.493 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.329 5.329 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.293 3.707 14 O -0.405 6.405 15 C -0.105 4.105 16 N -0.221 5.221 17 C -0.093 4.093 18 C -0.172 4.172 19 C 0.025 3.975 20 H 0.127 0.873 21 N -0.319 5.319 22 C -0.095 4.095 23 C 0.254 3.746 24 O -0.380 6.380 25 C 0.203 3.797 26 F -0.165 7.165 27 F -0.157 7.157 28 C -0.105 4.105 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.061 0.939 40 H 0.141 0.859 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.114 0.886 45 H 0.106 0.894 46 H 0.154 0.846 47 H 0.072 0.928 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.324 -1.051 22.348 22.998 hybrid contribution 1.338 -1.006 -0.412 1.724 sum -3.986 -2.058 21.936 22.390 Atomic orbital electron populations 1.22218 0.96695 1.01418 1.02408 1.21421 0.93600 0.84246 1.02586 1.48254 1.63769 1.13197 1.07696 1.19262 0.96194 0.93655 0.78034 1.21410 0.96902 1.31873 1.06265 0.92619 1.24932 0.97813 0.94918 0.96421 1.69928 1.35683 1.33372 1.14309 0.86512 0.84707 0.77694 0.78595 1.20667 1.21073 1.19943 1.20051 0.78802 0.87060 0.84807 1.90591 1.45416 1.17832 1.86652 1.22346 1.02716 0.94644 0.90808 1.64696 1.27578 1.29848 1.00000 1.23538 0.87665 1.01897 0.96195 1.22941 1.00752 0.98679 0.94818 1.22155 0.95339 0.96557 0.83446 0.87344 1.47876 1.40993 1.38168 1.04912 1.22330 0.91612 0.89671 1.05909 1.21070 0.84124 0.84039 0.85320 1.90813 1.32169 1.29309 1.85706 1.21628 0.75945 0.98517 0.83653 1.92974 1.30136 1.97337 1.96095 1.93066 1.88338 1.82570 1.51704 1.23292 0.99522 0.96598 0.91078 0.93012 0.91968 0.92191 0.89927 0.91971 0.95069 0.93834 0.92703 0.92285 0.88343 0.93922 0.85877 0.89901 0.90465 0.91680 0.88609 0.89418 0.84556 0.92764 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.62 5.93 -4.04 -0.02 1.59 16 3 N -0.60 -12.03 2.46 -175.06 -0.43 -12.46 16 4 C 0.25 6.28 5.16 -5.19 -0.03 6.25 16 5 C -0.53 -14.53 9.39 -34.44 -0.32 -14.85 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 9 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.51 9.91 7.38 -10.99 -0.08 9.83 16 14 O -0.53 -12.30 13.10 5.55 0.07 -12.23 16 15 C 0.03 0.37 4.07 -4.98 -0.02 0.35 16 16 N -0.50 -6.68 5.26 -231.89 -1.22 -7.90 16 17 C 0.03 0.49 5.31 -1.90 -0.01 0.48 16 18 C -0.13 -1.44 6.65 -24.87 -0.17 -1.61 16 19 C 0.13 1.33 3.39 -66.57 -0.23 1.11 16 20 H 0.11 1.25 6.96 -51.93 -0.36 0.89 16 21 N -0.59 -5.20 2.77 -172.39 -0.48 -5.67 16 22 C 0.05 0.30 8.83 59.84 0.53 0.82 16 23 C 0.47 4.71 7.53 -10.98 -0.08 4.63 16 24 O -0.51 -7.05 15.98 5.55 0.09 -6.96 16 25 C 0.26 1.85 4.90 36.01 0.18 2.03 16 26 F -0.18 -1.37 14.89 2.25 0.03 -1.34 16 27 F -0.18 -1.72 16.95 2.25 0.04 -1.68 16 28 C 0.02 0.26 5.86 -2.75 -0.02 0.24 16 29 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 34 H 0.03 0.81 8.07 -51.92 -0.42 0.39 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.06 0.77 7.07 -51.93 -0.37 0.40 16 38 H 0.10 1.22 7.19 -51.93 -0.37 0.84 16 39 H 0.04 0.64 8.02 -51.93 -0.42 0.22 16 40 H 0.12 2.17 5.96 -51.93 -0.31 1.86 16 41 H 0.08 0.84 6.84 -51.93 -0.36 0.49 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.32 7.87 -51.93 -0.41 -0.08 16 44 H 0.10 0.71 6.97 -51.93 -0.36 0.35 16 45 H 0.09 0.44 5.10 -51.93 -0.26 0.18 16 46 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.05 0.56 7.57 -51.93 -0.39 0.17 16 48 H 0.09 0.85 7.11 -51.93 -0.37 0.48 16 LS Contribution 388.21 15.07 5.85 5.85 Total: -1.00 -34.10 388.21 -7.47 -41.56 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -7.15 Total: -0.96 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 0.01 Total: 10.71 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -1.39 Total: -51.46 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.16 Total: -19.19 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.07 Total: -3.02 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.10 -7.47 -41.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001378137383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.694 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds