Wall clock time and date at job start Wed Apr 1 2020 04:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47495 * 2 1 4 4 C 1.46502 * 119.99822 * 270.00411 * 3 2 1 5 5 C 1.50697 * 109.47261 * 269.99867 * 4 3 2 6 6 H 1.08002 * 120.00012 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00153 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99846 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99889 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46912 * 90.00020 * 9 7 5 11 11 H 1.48494 * 109.46681 * 209.99619 * 9 7 5 12 12 H 1.48490 * 109.47290 * 329.99816 * 9 7 5 13 13 C 1.34772 * 119.99952 * 89.99890 * 3 2 1 14 14 O 1.21289 * 119.99510 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00155 * 0.02562 * 13 3 2 16 16 N 1.46908 * 109.47129 * 179.97438 * 15 13 3 17 17 C 1.48530 * 110.99944 * 307.40180 * 16 15 13 18 18 C 1.54943 * 103.22323 * 200.27674 * 17 16 15 19 19 C 1.54595 * 102.92356 * 37.41485 * 18 17 16 20 20 H 1.08996 * 110.39309 * 96.99632 * 19 18 17 21 21 N 1.46497 * 110.30799 * 219.12800 * 19 18 17 22 22 C 1.46496 * 120.00129 * 55.71621 * 21 19 18 23 23 C 1.34777 * 119.99525 * 235.71128 * 21 19 18 24 24 O 1.21283 * 120.00463 * 0.02562 * 23 21 19 25 25 C 1.50700 * 119.99675 * 179.72583 * 23 21 19 26 26 F 1.39898 * 109.47431 * 55.27777 * 25 23 21 27 27 F 1.39900 * 109.47316 * 175.27886 * 25 23 21 28 28 C 1.47900 * 111.00088 * 190.00183 * 16 15 13 29 29 H 1.09001 * 109.46929 * 299.99737 * 1 2 3 30 30 H 1.08997 * 109.47365 * 59.99794 * 1 2 3 31 31 H 1.08999 * 109.46860 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47214 * 239.99892 * 2 1 3 33 33 H 1.08997 * 109.47365 * 120.00205 * 2 1 3 34 34 H 1.09012 * 109.47212 * 29.99877 * 4 3 2 35 35 H 1.09004 * 109.47194 * 149.99270 * 4 3 2 36 36 H 0.96995 * 120.00010 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47164 * 60.00140 * 15 13 3 38 38 H 1.08996 * 109.47583 * 300.00098 * 15 13 3 39 39 H 1.09000 * 110.66945 * 318.70783 * 17 16 15 40 40 H 1.08998 * 110.67166 * 81.67639 * 17 16 15 41 41 H 1.08998 * 110.72446 * 279.05407 * 18 17 16 42 42 H 1.09001 * 110.72340 * 155.77313 * 18 17 16 43 43 H 1.08997 * 109.47115 * 269.99822 * 22 21 19 44 44 H 1.08995 * 109.47364 * 30.00213 * 22 21 19 45 45 H 1.09002 * 109.47090 * 149.99764 * 22 21 19 46 46 H 1.09004 * 109.47439 * 295.27683 * 25 23 21 47 47 H 1.09005 * 109.91596 * 26.49304 * 28 16 15 48 48 H 1.08996 * 109.91975 * 265.20340 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8349 -1.7039 6 1 4.3429 1.2308 -1.0960 7 6 4.1493 2.3904 -2.8777 8 7 3.3492 3.1265 -3.6177 9 14 5.9137 2.0974 -3.4166 10 1 5.9774 0.8766 -4.2599 11 1 6.3925 3.2650 -4.1992 12 1 6.7736 1.9175 -2.2195 13 6 2.2430 2.0165 1.1672 14 8 2.6470 3.1601 1.1671 15 6 1.9924 1.3060 2.4722 16 7 2.3111 2.2059 3.5888 17 6 3.6783 2.7683 3.4456 18 6 4.0277 3.2217 4.8854 19 6 3.3949 2.1148 5.7596 20 1 4.1443 1.3723 6.0336 21 7 2.7943 2.6977 6.9620 22 6 1.7892 3.7564 6.8393 23 6 3.1665 2.2598 8.1811 24 8 3.9989 1.3836 8.2827 25 6 2.5533 2.8637 9.4182 26 9 1.1600 2.7617 9.3454 27 9 3.0126 2.1788 10.5483 28 6 2.3080 1.4761 4.8752 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5816 1.6877 -2.0285 35 1 2.0955 3.1410 -1.1385 36 1 3.6752 3.5169 -4.4436 37 1 2.6229 0.4187 2.5298 38 1 0.9446 1.0114 2.5302 39 1 4.3752 2.0031 3.1035 40 1 3.6754 3.6174 2.7622 41 1 3.5784 4.1903 5.1044 42 1 5.1078 3.2554 5.0278 43 1 2.2833 4.7279 6.8365 44 1 1.2369 3.6269 5.9086 45 1 1.0995 3.7020 7.6816 46 1 2.8375 3.9136 9.4893 47 1 2.5379 0.4241 4.7059 48 1 1.3342 1.5735 5.3550 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001378137383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:12 Heat of formation + Delta-G solvation = -164.537731 kcal Electronic energy + Delta-G solvation = -31626.089000 eV Core-core repulsion = 26965.877799 eV Total energy + Delta-G solvation = -4660.211201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.27105 -48.30231 -41.55381 -40.78590 -39.21855 -37.01066 -36.35320 -34.92547 -32.88513 -31.58581 -30.17596 -29.63420 -28.78577 -27.94258 -26.79589 -24.77787 -23.98395 -22.62410 -22.39567 -20.66913 -19.88307 -19.41516 -18.72936 -18.63023 -18.41236 -17.96745 -17.62023 -17.30667 -16.68400 -16.59793 -16.20921 -16.06044 -15.67523 -15.33000 -15.06490 -14.99079 -14.79250 -14.66904 -14.39695 -14.34475 -14.12723 -14.01976 -13.66431 -13.47196 -13.29197 -13.23916 -13.15967 -13.05867 -12.95018 -12.76586 -12.67649 -12.67589 -12.51654 -12.32663 -12.14264 -11.91766 -11.74526 -11.66964 -11.05962 -10.64517 -10.42927 -9.89402 -9.48456 -9.38672 -8.22536 -6.37176 0.94989 1.35378 1.37884 1.38621 1.47996 1.85405 2.22247 2.40356 2.65969 2.95468 3.00454 3.06870 3.48031 3.51048 3.57616 3.71660 3.75386 3.98833 4.09036 4.18157 4.23057 4.27862 4.31037 4.37746 4.46448 4.57747 4.64046 4.66480 4.73620 4.86814 4.93753 4.98659 4.99295 5.04061 5.06478 5.18610 5.23138 5.27847 5.39663 5.58938 5.74822 5.83102 5.89917 6.02517 6.07037 6.61363 6.70741 6.82897 7.29078 7.52952 8.84252 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018827 B = 0.002244 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.839189 B =12473.039950 C =13198.142711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.496 3.504 14 O -0.575 6.575 15 C 0.040 3.960 16 N -0.504 5.504 17 C 0.036 3.964 18 C -0.121 4.121 19 C 0.133 3.867 20 H 0.097 0.903 21 N -0.581 5.581 22 C 0.044 3.956 23 C 0.468 3.532 24 O -0.553 6.553 25 C 0.265 3.735 26 F -0.184 7.184 27 F -0.192 7.192 28 C 0.030 3.970 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.019 0.981 35 H -0.002 1.002 36 H 0.267 0.733 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.029 0.971 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.189 0.811 47 H 0.063 0.937 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.939 -2.713 24.522 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.285 3.715 14 O -0.455 6.455 15 C -0.091 4.091 16 N -0.229 5.229 17 C -0.092 4.092 18 C -0.159 4.159 19 C 0.029 3.971 20 H 0.115 0.885 21 N -0.313 5.313 22 C -0.097 4.097 23 C 0.252 3.748 24 O -0.431 6.431 25 C 0.209 3.791 26 F -0.165 7.165 27 F -0.174 7.174 28 C -0.098 4.098 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.037 0.963 35 H 0.016 0.984 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.145 0.855 39 H 0.047 0.953 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.123 0.877 46 H 0.205 0.795 47 H 0.082 0.918 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.758 -2.103 24.394 25.153 hybrid contribution 1.400 -0.659 -1.061 1.876 sum -4.358 -2.762 23.334 23.897 Atomic orbital electron populations 1.22146 0.94481 1.03449 1.01770 1.21733 0.95394 0.81453 1.03717 1.48277 1.64103 1.15022 1.06246 1.18662 0.95090 0.91545 0.80366 1.21675 0.97861 1.31801 1.06432 0.93080 1.25835 1.02230 0.94537 0.96509 1.70048 1.37722 1.34217 1.14781 0.85447 0.79209 0.78140 0.78205 1.18982 1.20666 1.19793 1.21048 0.77478 0.86772 0.86223 1.90587 1.47268 1.20154 1.87521 1.22285 1.04735 0.94325 0.87761 1.64676 1.26900 1.30485 1.00845 1.23302 0.88171 1.00224 0.97459 1.22827 1.01256 0.99243 0.92600 1.21953 0.95143 0.96048 0.83960 0.88481 1.47923 1.40863 1.38275 1.04196 1.22515 0.91367 0.89589 1.06200 1.21625 0.83532 0.83350 0.86279 1.90794 1.34405 1.31441 1.86451 1.21918 0.75527 1.00272 0.81430 1.92974 1.30157 1.97433 1.95968 1.93033 1.88587 1.83274 1.52463 1.23302 1.00316 0.96711 0.89490 0.91944 0.94326 0.88736 0.91150 0.88454 0.96259 0.98437 0.92441 0.90322 0.85499 0.95261 0.89756 0.88976 0.89961 0.89832 0.89471 0.87702 0.79466 0.91845 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 10.24 71.98 0.74 -3.04 16 2 C 0.10 2.91 5.93 86.38 0.51 3.42 16 3 N -0.60 -24.82 2.46 -826.14 -2.03 -26.85 16 4 C 0.26 14.12 5.16 85.63 0.44 14.56 16 5 C -0.54 -30.75 9.39 25.60 0.24 -30.51 16 6 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.45 5.46 84.66 0.46 0.91 16 8 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 9 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.50 19.67 7.38 87.66 0.65 20.32 16 14 O -0.58 -28.17 13.10 -3.06 -0.04 -28.21 16 15 C 0.04 1.06 4.07 85.55 0.35 1.41 16 16 N -0.50 -12.92 5.26 -887.56 -4.67 -17.59 16 17 C 0.04 1.05 5.31 86.65 0.46 1.51 16 18 C -0.12 -2.51 6.65 31.80 0.21 -2.30 16 19 C 0.13 2.55 3.39 45.87 0.16 2.70 16 20 H 0.10 2.15 6.96 -2.39 -0.02 2.14 16 21 N -0.58 -8.94 2.77 -817.70 -2.27 -11.21 16 22 C 0.04 0.42 8.83 127.77 1.13 1.55 16 23 C 0.47 8.44 7.53 87.66 0.66 9.10 16 24 O -0.55 -15.02 15.98 -3.04 -0.05 -15.07 16 25 C 0.26 3.02 4.90 71.24 0.35 3.37 16 26 F -0.18 -2.18 14.89 44.97 0.67 -1.51 16 27 F -0.19 -3.43 16.95 44.97 0.76 -2.67 16 28 C 0.03 0.57 5.86 86.45 0.51 1.08 16 29 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 2.23 8.07 -2.38 -0.02 2.21 16 33 H 0.10 2.17 6.44 -2.39 -0.02 2.15 16 34 H 0.02 1.06 8.07 -2.38 -0.02 1.04 16 35 H 0.00 -0.15 7.42 -2.38 -0.02 -0.17 16 36 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.08 1.82 7.07 -2.39 -0.02 1.81 16 38 H 0.13 2.69 7.19 -2.39 -0.02 2.68 16 39 H 0.03 0.90 8.02 -2.39 -0.02 0.88 16 40 H 0.08 3.15 5.96 -2.39 -0.01 3.14 16 41 H 0.09 1.75 6.84 -2.39 -0.02 1.73 16 42 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.08 0.54 7.87 -2.39 -0.02 0.52 16 44 H 0.09 1.06 6.97 -2.39 -0.02 1.04 16 45 H 0.10 0.68 5.10 -2.39 -0.01 0.67 16 46 H 0.19 0.26 8.14 -2.38 -0.02 0.25 16 47 H 0.06 1.13 7.57 -2.38 -0.02 1.11 16 48 H 0.10 1.67 7.11 -2.39 -0.02 1.65 16 Total: -1.00 -79.55 388.21 2.53 -77.03 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.98 Total: 10.91 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 6.86 Total: 24.07 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -8.68 Total: -111.29 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.09 Total: -43.28 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 1.43 Total: -4.17 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -79.55 2.53 -77.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001378137383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.510 kcal (2) G-P(sol) polarization free energy of solvation -79.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds