Wall clock time and date at job start Wed Apr 1 2020 04:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.46957 * 2 1 4 4 C 1.46501 * 120.00200 * 269.99971 * 3 2 1 5 5 C 1.50696 * 109.47236 * 269.99971 * 4 3 2 6 6 H 1.08001 * 120.00135 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00229 * 179.97438 * 5 4 3 8 8 N 1.31525 * 119.99813 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00385 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47137 * 60.00143 * 9 7 5 11 11 H 1.48503 * 109.47238 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47228 * 300.00488 * 9 7 5 13 13 C 1.34780 * 120.00059 * 90.00111 * 3 2 1 14 14 O 1.21275 * 120.00012 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99823 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47063 * 180.02562 * 15 13 3 17 17 C 1.46902 * 111.00074 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47469 * 185.07532 * 17 16 15 19 19 H 1.09002 * 109.87123 * 304.25390 * 18 17 16 20 20 C 1.54323 * 109.88473 * 65.26700 * 18 17 16 21 21 C 1.55155 * 102.94325 * 141.61261 * 20 18 17 22 22 C 1.54912 * 101.58130 * 324.50081 * 21 20 18 23 23 N 1.47019 * 109.88433 * 183.23987 * 18 17 16 24 24 C 1.34774 * 125.64942 * 61.60757 * 23 18 17 25 25 O 1.21284 * 120.00200 * 5.01762 * 24 23 18 26 26 C 1.50697 * 119.99933 * 185.02249 * 24 23 18 27 27 F 1.39899 * 109.47066 * 184.99740 * 26 24 23 28 28 F 1.39898 * 109.47028 * 304.99519 * 26 24 23 29 29 H 1.09002 * 109.47149 * 299.99568 * 1 2 3 30 30 H 1.09001 * 109.47676 * 59.99750 * 1 2 3 31 31 H 1.09007 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47149 * 240.00432 * 2 1 3 33 33 H 1.08995 * 109.47401 * 119.99920 * 2 1 3 34 34 H 1.09007 * 109.47026 * 30.00191 * 4 3 2 35 35 H 1.08999 * 109.47275 * 150.00096 * 4 3 2 36 36 H 0.96999 * 119.99539 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47408 * 59.99644 * 15 13 3 38 38 H 1.09005 * 109.46968 * 299.99749 * 15 13 3 39 39 H 1.00892 * 110.99963 * 303.95350 * 16 15 13 40 40 H 1.09005 * 109.46923 * 65.06940 * 17 16 15 41 41 H 1.08999 * 109.47273 * 305.07409 * 17 16 15 42 42 H 1.09001 * 110.71919 * 259.97782 * 20 18 17 43 43 H 1.09002 * 110.71921 * 23.07460 * 20 18 17 44 44 H 1.09002 * 110.99982 * 82.57109 * 21 20 18 45 45 H 1.08997 * 111.00479 * 206.38993 * 21 20 18 46 46 H 1.08994 * 110.36509 * 155.84561 * 22 21 20 47 47 H 1.08992 * 110.36649 * 278.06114 * 22 21 20 48 48 H 1.08998 * 109.47367 * 64.99532 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3426 1.2304 -1.0962 7 6 4.1490 2.3898 -2.8779 8 7 3.3489 3.1260 -3.6181 9 14 5.9130 2.0958 -3.4175 10 1 6.1401 0.6391 -3.5949 11 1 6.1605 2.7961 -4.7035 12 1 6.8409 2.6191 -2.3830 13 6 2.2429 2.0166 1.1672 14 8 2.6466 3.1602 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3098 2.2062 3.5889 17 6 2.0763 1.5460 4.8802 18 6 2.2952 2.5502 6.0135 19 1 3.2924 2.9836 5.9370 20 6 1.2312 3.6656 5.9393 21 6 0.9014 3.9312 7.4319 22 6 1.0128 2.5078 8.0331 23 7 2.1397 1.8799 7.3127 24 6 2.8977 0.8625 7.7674 25 8 3.8551 0.4855 7.1253 26 6 2.5556 0.1932 9.0735 27 9 3.5422 -0.7475 9.3879 28 9 2.4886 1.1552 10.0869 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5815 1.6878 -2.0284 35 1 2.0954 3.1411 -1.1384 36 1 3.6750 3.5165 -4.4439 37 1 2.6228 0.4187 2.5298 38 1 0.9444 1.0114 2.5302 39 1 3.2577 2.5451 3.5218 40 1 2.7707 0.7133 4.9933 41 1 1.0528 1.1731 4.9179 42 1 1.6418 4.5596 5.4700 43 1 0.3479 3.3207 5.4018 44 1 1.6335 4.6030 7.8802 45 1 -0.1084 4.3256 7.5447 46 1 1.2297 2.5625 9.0998 47 1 0.0919 1.9506 7.8620 48 1 1.5916 -0.3076 8.9836 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001380267232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:23 Heat of formation + Delta-G solvation = -159.420676 kcal Electronic energy + Delta-G solvation = -31104.667886 eV Core-core repulsion = 26444.678577 eV Total energy + Delta-G solvation = -4659.989309 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -49.65930 -47.68139 -40.61707 -39.10584 -38.02005 -35.73162 -35.05552 -32.79771 -32.33573 -30.75421 -30.06906 -28.40271 -27.76271 -26.13951 -24.33276 -23.04567 -22.93557 -22.12289 -21.57124 -20.16417 -18.71659 -18.26936 -18.17076 -17.65765 -16.92661 -16.56465 -16.41483 -15.95494 -15.65341 -15.56939 -14.92786 -14.59777 -14.46633 -14.38153 -14.31543 -13.91024 -13.74048 -13.72483 -13.59863 -13.33200 -13.22247 -13.08356 -12.75725 -12.47006 -12.41193 -12.01247 -11.96440 -11.88082 -11.57731 -11.48288 -11.21446 -11.12250 -11.05326 -10.91239 -10.72483 -10.51569 -10.38082 -10.11794 -9.63683 -9.29537 -8.89286 -8.41914 -8.36108 -7.64040 -6.03057 -4.07787 1.68635 1.96940 3.18515 3.32743 3.37135 3.39032 3.41806 3.46940 3.76250 4.01852 4.09224 4.14389 4.33373 4.38664 4.48009 4.53010 4.69275 4.94095 5.00805 5.06789 5.15746 5.28020 5.30792 5.31548 5.41206 5.46719 5.51242 5.55137 5.59889 5.65531 5.67314 5.80613 5.93773 5.97219 6.02667 6.23052 6.47496 6.72836 6.83849 7.12356 7.29052 7.36487 7.47089 7.57312 7.93663 8.25197 8.45159 8.91772 9.13188 9.57358 11.04906 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.002129 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.615819 B =13148.910598 C =13456.630870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.505 3.495 14 O -0.528 6.528 15 C 0.043 3.957 16 N -0.667 5.667 17 C 0.050 3.950 18 C 0.139 3.861 19 H 0.083 0.917 20 C -0.112 4.112 21 C -0.135 4.135 22 C 0.084 3.916 23 N -0.601 5.601 24 C 0.485 3.515 25 O -0.497 6.497 26 C 0.262 3.738 27 F -0.175 7.175 28 F -0.187 7.187 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.354 0.646 40 H 0.041 0.959 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.609 -5.519 26.264 28.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.405 6.405 15 C -0.089 4.089 16 N -0.300 5.300 17 C -0.081 4.081 18 C 0.037 3.963 19 H 0.101 0.899 20 C -0.150 4.150 21 C -0.173 4.173 22 C -0.039 4.039 23 N -0.336 5.336 24 C 0.268 3.732 25 O -0.370 6.370 26 C 0.205 3.795 27 F -0.156 7.156 28 F -0.169 7.169 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.173 0.827 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.095 0.905 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.405 -4.759 25.760 28.186 hybrid contribution 1.724 -0.966 -0.249 1.992 sum -8.680 -5.726 25.510 27.548 Atomic orbital electron populations 1.22220 0.96806 1.01322 1.02348 1.21405 0.93504 0.84329 1.02579 1.48253 1.64035 1.13176 1.07719 1.19244 0.96143 0.93655 0.78087 1.21397 0.96975 1.31904 1.06241 0.92635 1.24931 0.97815 0.94938 0.96397 1.69927 1.35699 1.33408 1.14363 0.86568 0.84852 0.78221 0.77828 1.20296 1.21170 1.20189 1.20133 0.78905 0.87064 0.84827 1.90671 1.45141 1.17713 1.86927 1.21883 1.02203 0.94390 0.90459 1.60025 1.32910 1.37413 0.99648 1.22244 1.01494 0.95479 0.88846 1.21634 1.01024 0.92671 0.81016 0.89917 1.22598 0.98692 0.98143 0.95562 1.22823 1.03172 0.95085 0.96176 1.22750 0.88943 0.94537 0.97622 1.48594 1.32827 1.33087 1.19124 1.20687 0.83582 0.81056 0.87844 1.90855 1.26082 1.62156 1.57899 1.21610 0.92929 0.81345 0.83620 1.93075 1.65038 1.64390 1.93063 1.93014 1.96964 1.64664 1.62238 0.93091 0.91982 0.92257 0.89970 0.91961 0.95081 0.93878 0.92681 0.92910 0.88844 0.82679 0.94040 0.90814 0.89026 0.89653 0.90356 0.89297 0.89284 0.90501 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.15 0.38 -1.83 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.66 16 3 N -0.60 -12.56 2.46 -175.06 -0.43 -12.99 16 4 C 0.25 6.48 5.16 -5.19 -0.03 6.46 16 5 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 C 0.51 10.39 7.71 -10.98 -0.08 10.30 16 14 O -0.53 -13.20 15.78 5.56 0.09 -13.11 16 15 C 0.04 0.64 4.71 -4.98 -0.02 0.62 16 16 N -0.67 -9.26 5.85 -115.06 -0.67 -9.93 16 17 C 0.05 0.55 5.05 -3.82 -0.02 0.53 16 18 C 0.14 1.34 3.07 -66.96 -0.21 1.14 16 19 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 20 C -0.11 -0.86 6.24 -24.90 -0.16 -1.02 16 21 C -0.13 -0.69 7.09 -24.58 -0.17 -0.87 16 22 C 0.08 0.42 6.64 -2.35 -0.02 0.40 16 23 N -0.60 -5.00 3.08 -162.77 -0.50 -5.50 16 24 C 0.49 4.89 7.42 -10.99 -0.08 4.81 16 25 O -0.50 -7.20 15.80 5.55 0.09 -7.11 16 26 C 0.26 1.86 5.23 36.00 0.19 2.04 16 27 F -0.17 -1.74 16.95 2.25 0.04 -1.70 16 28 F -0.19 -1.36 15.27 2.25 0.03 -1.32 16 29 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 33 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 34 H 0.03 0.82 8.07 -51.92 -0.42 0.40 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.05 0.74 7.40 -51.93 -0.38 0.35 16 38 H 0.09 1.19 7.19 -51.93 -0.37 0.82 16 39 H 0.35 5.42 8.49 -39.30 -0.33 5.09 16 40 H 0.04 0.53 6.93 -51.93 -0.36 0.17 16 41 H 0.07 0.72 8.06 -51.93 -0.42 0.31 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.68 7.80 -51.93 -0.40 0.27 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.09 0.38 6.16 -51.93 -0.32 0.06 16 47 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 48 H 0.14 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -35.87 399.17 -7.74 -43.61 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.45 Total: 0.40 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -0.66 Total: 10.58 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.87 Total: -54.42 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.18 Total: -20.22 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.07 Total: -3.03 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.87 -7.74 -43.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001380267232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.809 kcal (2) G-P(sol) polarization free energy of solvation -35.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds