Wall clock time and date at job start Wed Apr 1 2020 04:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.46957 * 2 1 4 4 C 1.46501 * 120.00200 * 269.99971 * 3 2 1 5 5 C 1.50696 * 109.47236 * 269.99971 * 4 3 2 6 6 H 1.08001 * 120.00135 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00229 * 179.97438 * 5 4 3 8 8 N 1.31525 * 119.99813 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00385 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47137 * 60.00143 * 9 7 5 11 11 H 1.48503 * 109.47238 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47228 * 300.00488 * 9 7 5 13 13 C 1.34780 * 120.00059 * 90.00111 * 3 2 1 14 14 O 1.21275 * 120.00012 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99823 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47063 * 180.02562 * 15 13 3 17 17 C 1.46902 * 111.00074 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47469 * 185.07532 * 17 16 15 19 19 H 1.09002 * 109.87123 * 304.25390 * 18 17 16 20 20 C 1.54323 * 109.88473 * 65.26700 * 18 17 16 21 21 C 1.55155 * 102.94325 * 141.61261 * 20 18 17 22 22 C 1.54912 * 101.58130 * 324.50081 * 21 20 18 23 23 N 1.47019 * 109.88433 * 183.23987 * 18 17 16 24 24 C 1.34774 * 125.64942 * 61.60757 * 23 18 17 25 25 O 1.21284 * 120.00200 * 5.01762 * 24 23 18 26 26 C 1.50697 * 119.99933 * 185.02249 * 24 23 18 27 27 F 1.39899 * 109.47066 * 184.99740 * 26 24 23 28 28 F 1.39898 * 109.47028 * 304.99519 * 26 24 23 29 29 H 1.09002 * 109.47149 * 299.99568 * 1 2 3 30 30 H 1.09001 * 109.47676 * 59.99750 * 1 2 3 31 31 H 1.09007 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47149 * 240.00432 * 2 1 3 33 33 H 1.08995 * 109.47401 * 119.99920 * 2 1 3 34 34 H 1.09007 * 109.47026 * 30.00191 * 4 3 2 35 35 H 1.08999 * 109.47275 * 150.00096 * 4 3 2 36 36 H 0.96999 * 119.99539 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47408 * 59.99644 * 15 13 3 38 38 H 1.09005 * 109.46968 * 299.99749 * 15 13 3 39 39 H 1.00892 * 110.99963 * 303.95350 * 16 15 13 40 40 H 1.09005 * 109.46923 * 65.06940 * 17 16 15 41 41 H 1.08999 * 109.47273 * 305.07409 * 17 16 15 42 42 H 1.09001 * 110.71919 * 259.97782 * 20 18 17 43 43 H 1.09002 * 110.71921 * 23.07460 * 20 18 17 44 44 H 1.09002 * 110.99982 * 82.57109 * 21 20 18 45 45 H 1.08997 * 111.00479 * 206.38993 * 21 20 18 46 46 H 1.08994 * 110.36509 * 155.84561 * 22 21 20 47 47 H 1.08992 * 110.36649 * 278.06114 * 22 21 20 48 48 H 1.08998 * 109.47367 * 64.99532 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3426 1.2304 -1.0962 7 6 4.1490 2.3898 -2.8779 8 7 3.3489 3.1260 -3.6181 9 14 5.9130 2.0958 -3.4175 10 1 6.1401 0.6391 -3.5949 11 1 6.1605 2.7961 -4.7035 12 1 6.8409 2.6191 -2.3830 13 6 2.2429 2.0166 1.1672 14 8 2.6466 3.1602 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3098 2.2062 3.5889 17 6 2.0763 1.5460 4.8802 18 6 2.2952 2.5502 6.0135 19 1 3.2924 2.9836 5.9370 20 6 1.2312 3.6656 5.9393 21 6 0.9014 3.9312 7.4319 22 6 1.0128 2.5078 8.0331 23 7 2.1397 1.8799 7.3127 24 6 2.8977 0.8625 7.7674 25 8 3.8551 0.4855 7.1253 26 6 2.5556 0.1932 9.0735 27 9 3.5422 -0.7475 9.3879 28 9 2.4886 1.1552 10.0869 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5815 1.6878 -2.0284 35 1 2.0954 3.1411 -1.1384 36 1 3.6750 3.5165 -4.4439 37 1 2.6228 0.4187 2.5298 38 1 0.9444 1.0114 2.5302 39 1 3.2577 2.5451 3.5218 40 1 2.7707 0.7133 4.9933 41 1 1.0528 1.1731 4.9179 42 1 1.6418 4.5596 5.4700 43 1 0.3479 3.3207 5.4018 44 1 1.6335 4.6030 7.8802 45 1 -0.1084 4.3256 7.5447 46 1 1.2297 2.5625 9.0998 47 1 0.0919 1.9506 7.8620 48 1 1.5916 -0.3076 8.9836 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001380267232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:15 Heat of formation + Delta-G solvation = -185.454356 kcal Electronic energy + Delta-G solvation = -31105.796791 eV Core-core repulsion = 26444.678577 eV Total energy + Delta-G solvation = -4661.118214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -50.24768 -48.28887 -41.35459 -40.69921 -38.81474 -37.09497 -36.43938 -34.90221 -33.02275 -31.80783 -31.40137 -29.52114 -28.86062 -27.49040 -25.42417 -24.56666 -23.89373 -23.46148 -22.15850 -20.90889 -19.96261 -19.12924 -18.81109 -18.63153 -18.28769 -17.99062 -17.51653 -17.27314 -17.02779 -16.55782 -16.32058 -15.66566 -15.61724 -15.16586 -15.08096 -15.02666 -14.70797 -14.63728 -14.56952 -14.47797 -14.23969 -14.17961 -13.76765 -13.53960 -13.42972 -13.34828 -13.19801 -13.12239 -12.99660 -12.72173 -12.64616 -12.48496 -12.15608 -12.06720 -11.94330 -11.85440 -11.73943 -11.60745 -11.13629 -10.65381 -10.60317 -9.95347 -9.49313 -9.42038 -8.23423 -6.38282 0.95542 1.31249 1.34522 1.38724 1.45970 1.84901 2.23320 2.40103 2.65912 2.93550 3.05670 3.21382 3.47611 3.59485 3.66612 3.69828 3.72915 3.85220 4.07941 4.18598 4.24680 4.30379 4.34323 4.41430 4.45972 4.60826 4.64314 4.67100 4.79499 4.91333 4.94877 4.99511 4.99863 5.05682 5.14145 5.21528 5.27209 5.38968 5.39557 5.56910 5.76417 5.88941 6.06133 6.12418 6.14847 6.60379 6.69443 6.82003 7.27664 7.50881 8.83290 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.002129 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.615819 B =13148.910598 C =13456.630870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.544 4.544 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.261 1.261 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.495 3.505 14 O -0.584 6.584 15 C 0.060 3.940 16 N -0.674 5.674 17 C 0.060 3.940 18 C 0.137 3.863 19 H 0.055 0.945 20 C -0.108 4.108 21 C -0.127 4.127 22 C 0.081 3.919 23 N -0.595 5.595 24 C 0.476 3.524 25 O -0.554 6.554 26 C 0.268 3.732 27 F -0.194 7.194 28 F -0.187 7.187 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.022 0.978 35 H -0.004 1.004 36 H 0.267 0.733 37 H 0.069 0.931 38 H 0.126 0.874 39 H 0.341 0.659 40 H 0.024 0.976 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.113 0.887 46 H 0.102 0.898 47 H 0.107 0.893 48 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.283 -7.364 28.393 31.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.185 1.185 11 H -0.202 1.202 12 H -0.205 1.205 13 C 0.284 3.716 14 O -0.464 6.464 15 C -0.072 4.072 16 N -0.306 5.306 17 C -0.070 4.070 18 C 0.033 3.967 19 H 0.073 0.927 20 C -0.147 4.147 21 C -0.165 4.165 22 C -0.040 4.040 23 N -0.328 5.328 24 C 0.261 3.739 25 O -0.431 6.431 26 C 0.212 3.788 27 F -0.175 7.175 28 F -0.168 7.168 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.040 0.960 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.144 0.856 39 H 0.159 0.841 40 H 0.042 0.958 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.132 0.868 46 H 0.120 0.880 47 H 0.125 0.875 48 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -12.144 -6.638 27.931 31.172 hybrid contribution 2.202 -0.333 -0.902 2.403 sum -9.942 -6.971 27.029 29.632 Atomic orbital electron populations 1.22144 0.94291 1.03504 1.01826 1.21742 0.95545 0.81355 1.03697 1.48283 1.64124 1.15060 1.06215 1.18668 0.95108 0.91531 0.80446 1.21676 0.97983 1.32029 1.06530 0.93135 1.25843 1.02307 0.94499 0.96439 1.70046 1.37743 1.34111 1.14797 0.85499 0.79113 0.78988 0.77390 1.18544 1.20176 1.20495 1.21179 0.77415 0.86654 0.86396 1.90638 1.47541 1.20390 1.87872 1.21791 1.04321 0.93832 0.87229 1.60061 1.32089 1.37783 1.00672 1.22224 1.02108 0.94969 0.87663 1.21549 1.00435 0.93050 0.81616 0.92666 1.22531 0.97862 0.96665 0.97595 1.22835 1.04434 0.95404 0.93802 1.23056 0.88733 0.94309 0.97853 1.48696 1.33211 1.32268 1.18654 1.21356 0.82842 0.80986 0.88680 1.90828 1.28477 1.63995 1.59843 1.21931 0.94329 0.80871 0.81683 1.93035 1.66336 1.65052 1.93065 1.93014 1.96963 1.64861 1.61981 0.91877 0.94265 0.88632 0.91148 0.88541 0.96008 0.98553 0.92374 0.91297 0.85619 0.84121 0.95790 0.88557 0.90597 0.89238 0.90858 0.86830 0.88023 0.87468 0.79141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 10.24 71.98 0.74 -3.07 16 2 C 0.10 3.00 5.93 86.38 0.51 3.51 16 3 N -0.60 -25.77 2.46 -826.16 -2.03 -27.80 16 4 C 0.26 14.48 5.16 85.63 0.44 14.92 16 5 C -0.54 -31.95 9.39 25.60 0.24 -31.71 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 7 C 0.01 0.48 5.46 84.65 0.46 0.94 16 8 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 9 Si 0.97 45.81 29.54 68.60 2.03 47.84 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 C 0.50 20.68 7.71 87.66 0.68 21.36 16 14 O -0.58 -30.63 15.78 -3.01 -0.05 -30.68 16 15 C 0.06 1.70 4.71 85.56 0.40 2.10 16 16 N -0.67 -18.54 5.85 -517.93 -3.03 -21.57 16 17 C 0.06 1.26 5.05 86.30 0.44 1.70 16 18 C 0.14 2.58 3.07 45.34 0.14 2.71 16 19 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 20 C -0.11 -1.53 6.24 31.78 0.20 -1.34 16 21 C -0.13 -0.97 7.09 31.99 0.23 -0.74 16 22 C 0.08 0.52 6.64 86.79 0.58 1.10 16 23 N -0.59 -8.85 3.08 -787.26 -2.42 -11.27 16 24 C 0.48 9.07 7.42 87.66 0.65 9.72 16 25 O -0.55 -16.38 15.80 -3.04 -0.05 -16.42 16 26 C 0.27 3.12 5.23 71.24 0.37 3.50 16 27 F -0.19 -3.63 16.95 44.97 0.76 -2.87 16 28 F -0.19 -2.21 15.27 44.97 0.69 -1.52 16 29 H 0.06 1.36 7.22 -2.39 -0.02 1.34 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 33 H 0.10 2.27 6.44 -2.39 -0.02 2.26 16 34 H 0.02 1.22 8.07 -2.38 -0.02 1.20 16 35 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 36 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 37 H 0.07 1.76 7.40 -2.39 -0.02 1.75 16 38 H 0.13 2.76 7.19 -2.38 -0.02 2.74 16 39 H 0.34 10.91 8.49 -89.70 -0.76 10.15 16 40 H 0.02 0.60 6.93 -2.38 -0.02 0.58 16 41 H 0.10 1.58 8.06 -2.39 -0.02 1.56 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 1.21 7.80 -2.39 -0.02 1.20 16 44 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.10 0.47 6.16 -2.39 -0.01 0.46 16 47 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 48 H 0.19 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -84.75 399.17 2.47 -82.28 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.22 Total: 13.92 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: 6.07 Total: 24.69 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -7.20 Total: -117.24 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -0.10 Total: -47.10 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 1.45 Total: -4.39 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -84.75 2.47 -82.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001380267232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.179 kcal (2) G-P(sol) polarization free energy of solvation -84.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds