Wall clock time and date at job start Wed Apr 1 2020 04:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46944 * 2 1 4 4 C 1.46499 * 120.00383 * 270.00693 * 3 2 1 5 5 C 1.50707 * 109.46702 * 269.99653 * 4 3 2 6 6 H 1.07993 * 119.99914 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99889 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00166 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99944 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46910 * 90.00313 * 9 7 5 11 11 H 1.48500 * 109.47206 * 209.99776 * 9 7 5 12 12 H 1.48498 * 109.47515 * 330.00265 * 9 7 5 13 13 C 1.34777 * 119.99758 * 90.00067 * 3 2 1 14 14 O 1.21279 * 119.99813 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00167 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47455 * 179.97438 * 15 13 3 17 17 C 1.46903 * 110.99834 * 293.95548 * 16 15 13 18 18 C 1.46896 * 111.00083 * 170.00188 * 16 15 13 19 19 C 1.53005 * 109.47139 * 190.00034 * 18 16 15 20 20 N 1.46496 * 109.47187 * 179.97438 * 19 18 16 21 21 C 1.34774 * 119.99757 * 179.97438 * 20 19 18 22 22 O 1.21282 * 120.00208 * 0.02562 * 21 20 19 23 23 C 1.50703 * 120.00167 * 180.02562 * 21 20 19 24 24 H 1.09007 * 115.55644 * 325.69499 * 23 21 20 25 25 C 1.53069 * 117.49649 * 111.39727 * 23 21 20 26 26 C 1.52995 * 117.50261 * 180.02562 * 23 21 20 27 27 F 1.39905 * 117.50066 * 145.01999 * 26 23 21 28 28 F 1.39897 * 117.49662 * 0.02562 * 26 23 21 29 29 H 1.09000 * 109.46974 * 299.99189 * 1 2 3 30 30 H 1.08993 * 109.47397 * 59.99935 * 1 2 3 31 31 H 1.09002 * 109.46876 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47410 * 240.00544 * 2 1 3 33 33 H 1.09002 * 109.47616 * 119.99934 * 2 1 3 34 34 H 1.08998 * 109.47125 * 29.99431 * 4 3 2 35 35 H 1.08997 * 109.47318 * 149.99943 * 4 3 2 36 36 H 0.96998 * 120.00207 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.47201 * 59.99885 * 15 13 3 38 38 H 1.09006 * 109.47407 * 300.00220 * 15 13 3 39 39 H 1.09001 * 109.47122 * 296.04162 * 17 16 15 40 40 H 1.09008 * 109.47063 * 56.04620 * 17 16 15 41 41 H 1.08999 * 109.47271 * 176.04411 * 17 16 15 42 42 H 1.08994 * 109.47527 * 70.00041 * 18 16 15 43 43 H 1.09004 * 109.47216 * 310.00025 * 18 16 15 44 44 H 1.09001 * 109.46519 * 59.99697 * 19 18 16 45 45 H 1.09004 * 109.47059 * 300.00087 * 19 18 16 46 46 H 0.97002 * 120.00236 * 0.02562 * 20 19 18 47 47 H 1.09000 * 117.49477 * 0.02562 * 25 23 21 48 48 H 1.08999 * 117.51921 * 214.96567 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 3.6857 1.8353 -1.7037 6 1 4.3425 1.2305 -1.0962 7 6 4.1489 2.3900 -2.8779 8 7 5.3908 2.1831 -3.2579 9 14 3.0121 3.4343 -3.9298 10 1 3.1144 4.8549 -3.5090 11 1 3.4056 3.3112 -5.3564 12 1 1.6127 2.9674 -3.7601 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3110 2.2058 3.5889 17 6 3.7477 2.5096 3.6267 18 6 1.8589 1.6395 4.8668 19 6 1.9782 2.6986 5.9646 20 7 1.5268 2.1341 7.2388 21 6 1.5434 2.8903 8.3543 22 8 1.9316 4.0382 8.3032 23 6 1.0796 2.3095 9.6653 24 1 0.2624 1.5911 9.5986 25 6 2.1352 2.0808 10.7499 26 6 1.1220 3.2185 10.8952 27 9 0.1094 3.0639 11.8481 28 9 1.5879 4.5255 10.7166 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5815 1.6879 -2.0283 35 1 2.0953 3.1412 -1.1382 36 1 5.7166 2.5730 -4.0841 37 1 2.6229 0.4187 2.5298 38 1 0.9444 1.0113 2.5303 39 1 4.3076 1.5948 3.8212 40 1 4.0560 2.9275 2.6682 41 1 3.9457 3.2320 4.4185 42 1 2.4780 0.7798 5.1226 43 1 0.8192 1.3247 4.7771 44 1 1.3590 3.5584 5.7087 45 1 3.0179 3.0134 6.0542 46 1 1.2167 1.2160 7.2798 47 1 3.1648 2.3509 10.5149 48 1 2.0127 1.2121 11.3968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001390760208.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:47 Heat of formation + Delta-G solvation = -116.918583 kcal Electronic energy + Delta-G solvation = -30231.363018 eV Core-core repulsion = 25573.216738 eV Total energy + Delta-G solvation = -4658.146280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -49.09316 -47.73095 -40.28231 -39.48355 -37.43013 -36.15120 -35.41304 -34.79916 -32.74082 -30.48972 -30.02576 -28.56631 -27.11133 -25.81278 -24.05431 -23.04481 -23.01470 -22.16340 -21.34606 -20.66758 -18.73909 -18.36120 -17.56765 -16.95169 -16.93226 -16.55541 -16.51921 -16.10018 -16.07249 -15.49019 -15.32090 -14.85175 -14.44464 -14.36609 -14.24629 -14.18456 -13.87249 -13.76554 -13.66254 -13.52102 -13.33920 -13.07210 -12.82358 -12.53275 -12.26971 -12.14359 -11.96554 -11.81794 -11.67937 -11.48535 -11.37474 -11.24437 -10.98245 -10.72584 -10.69099 -10.50767 -10.30740 -10.15889 -9.55737 -9.46519 -9.03697 -8.59991 -8.30355 -7.72716 -6.10136 -4.08868 1.78490 2.28224 2.52832 2.83014 3.28604 3.32650 3.34504 3.36982 3.52504 3.62370 3.82502 4.05896 4.14458 4.30724 4.38799 4.57090 4.75761 4.79603 4.93751 4.94334 5.12546 5.14675 5.15262 5.23450 5.27323 5.39014 5.50337 5.56637 5.60587 5.64419 5.68833 5.76431 5.91959 5.97031 6.10849 6.34927 6.35843 6.66475 6.84874 6.96003 6.97651 7.02900 7.34760 7.60224 7.72854 8.24721 8.45648 8.91510 9.00072 9.50482 11.03166 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.001703 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.871410 B =16439.317259 C =16967.908961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.217 3.783 5 C -0.528 4.528 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.521 6.521 15 C 0.039 3.961 16 N -0.519 5.519 17 C 0.014 3.986 18 C 0.046 3.954 19 C 0.120 3.880 20 N -0.720 5.720 21 C 0.539 3.461 22 O -0.515 6.515 23 C -0.197 4.197 24 H 0.150 0.850 25 C -0.148 4.148 26 C 0.230 3.770 27 F -0.156 7.156 28 F -0.137 7.137 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.029 0.971 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.021 0.979 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.040 0.960 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.401 0.599 47 H 0.129 0.871 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.236 -9.010 26.100 29.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.567 4.567 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.397 6.397 15 C -0.092 4.092 16 N -0.244 5.244 17 C -0.134 4.134 18 C -0.083 4.083 19 C -0.003 4.003 20 N -0.373 5.373 21 C 0.323 3.677 22 O -0.389 6.389 23 C -0.219 4.219 24 H 0.167 0.833 25 C -0.186 4.186 26 C 0.193 3.807 27 F -0.137 7.137 28 F -0.117 7.117 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.039 0.961 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.236 0.764 47 H 0.147 0.853 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.857 -7.006 25.806 28.861 hybrid contribution -0.375 -0.762 -0.490 0.981 sum -11.232 -7.768 25.316 28.765 Atomic orbital electron populations 1.22238 0.96763 1.01521 1.02315 1.21434 0.93398 0.83966 1.02993 1.47943 1.64512 1.13302 1.06982 1.19633 0.97225 0.93436 0.80026 1.21316 0.95356 1.32875 1.07105 0.90870 1.24859 0.95002 0.95804 0.97380 1.69893 1.15153 1.45010 1.23557 0.86847 0.81439 0.81653 0.79720 1.19877 1.21118 1.19091 1.20092 0.78695 0.87085 0.84676 1.90651 1.44549 1.17754 1.86717 1.22067 1.02321 0.94229 0.90580 1.61489 1.18369 1.43659 1.00866 1.22683 0.85682 0.99668 1.05343 1.22235 1.01196 0.95284 0.89583 1.21395 1.01279 0.96944 0.80680 1.45778 1.66944 1.16235 1.08316 1.19177 0.78685 0.85964 0.83888 1.90844 1.45582 1.16964 1.85542 1.23657 1.04498 1.03249 0.90486 0.83257 1.24316 0.97344 0.98821 0.98105 1.19460 0.90694 0.79828 0.90744 1.93061 1.60639 1.95394 1.64560 1.93147 1.87621 1.35969 1.94960 0.92975 0.92151 0.92027 0.89720 0.91648 0.95323 0.94546 0.92571 0.92210 0.88461 0.96069 0.88332 0.91337 0.94189 0.90157 0.89937 0.90764 0.76440 0.85265 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 37.16 0.38 -1.59 16 2 C 0.11 1.54 5.93 -4.04 -0.02 1.51 16 3 N -0.59 -11.67 2.46 -175.06 -0.43 -12.10 16 4 C 0.22 5.20 4.23 -5.19 -0.02 5.18 16 5 C -0.53 -14.91 9.94 -34.44 -0.34 -15.25 16 6 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 9 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 13 C 0.51 9.89 7.36 -10.99 -0.08 9.80 16 14 O -0.52 -12.43 13.91 5.56 0.08 -12.35 16 15 C 0.04 0.53 4.00 -4.98 -0.02 0.51 16 16 N -0.52 -6.94 4.50 -244.36 -1.10 -8.04 16 17 C 0.01 0.20 8.96 60.07 0.54 0.73 16 18 C 0.05 0.41 5.07 -3.82 -0.02 0.39 16 19 C 0.12 1.15 5.60 -4.04 -0.02 1.12 16 20 N -0.72 -5.03 5.56 -60.29 -0.33 -5.36 16 21 C 0.54 4.92 7.61 -10.99 -0.08 4.83 16 22 O -0.51 -7.22 15.14 5.56 0.08 -7.13 16 23 C -0.20 -1.11 6.17 -91.74 -0.57 -1.68 16 24 H 0.15 0.37 8.14 -51.93 -0.42 -0.06 16 25 C -0.15 -0.62 10.21 -26.67 -0.27 -0.90 16 26 C 0.23 1.82 5.19 -26.71 -0.14 1.68 16 27 F -0.16 -1.28 17.60 2.25 0.04 -1.24 16 28 F -0.14 -1.60 15.71 2.25 0.04 -1.56 16 29 H 0.05 0.57 7.22 -51.93 -0.38 0.19 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 33 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 34 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 35 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.06 0.73 7.38 -51.93 -0.38 0.35 16 38 H 0.10 1.07 6.98 -51.93 -0.36 0.71 16 39 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 1.82 5.83 -51.92 -0.30 1.52 16 41 H 0.07 0.89 6.47 -51.93 -0.34 0.55 16 42 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 43 H 0.08 0.58 7.93 -51.93 -0.41 0.17 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 0.81 6.55 -51.93 -0.34 0.47 16 46 H 0.40 1.40 8.47 -40.82 -0.35 1.06 16 47 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -37.44 399.86 -7.58 -45.01 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -7.31 Total: -1.73 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -0.77 Total: 8.33 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -1.09 Total: -52.18 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.16 Total: -19.48 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.08 Total: -2.80 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.44 -7.58 -45.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390760208.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.904 kcal (2) G-P(sol) polarization free energy of solvation -37.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds