Wall clock time and date at job start Wed Apr 1 2020 04:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46944 * 2 1 4 4 C 1.46499 * 120.00383 * 270.00693 * 3 2 1 5 5 C 1.50707 * 109.46702 * 269.99653 * 4 3 2 6 6 H 1.07993 * 119.99914 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99889 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00166 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99944 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46910 * 90.00313 * 9 7 5 11 11 H 1.48500 * 109.47206 * 209.99776 * 9 7 5 12 12 H 1.48498 * 109.47515 * 330.00265 * 9 7 5 13 13 C 1.34777 * 119.99758 * 90.00067 * 3 2 1 14 14 O 1.21279 * 119.99813 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00167 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47455 * 179.97438 * 15 13 3 17 17 C 1.46903 * 110.99834 * 293.95548 * 16 15 13 18 18 C 1.46896 * 111.00083 * 170.00188 * 16 15 13 19 19 C 1.53005 * 109.47139 * 190.00034 * 18 16 15 20 20 N 1.46496 * 109.47187 * 179.97438 * 19 18 16 21 21 C 1.34774 * 119.99757 * 179.97438 * 20 19 18 22 22 O 1.21282 * 120.00208 * 0.02562 * 21 20 19 23 23 C 1.50703 * 120.00167 * 180.02562 * 21 20 19 24 24 H 1.09007 * 115.55644 * 325.69499 * 23 21 20 25 25 C 1.53069 * 117.49649 * 111.39727 * 23 21 20 26 26 C 1.52995 * 117.50261 * 180.02562 * 23 21 20 27 27 F 1.39905 * 117.50066 * 145.01999 * 26 23 21 28 28 F 1.39897 * 117.49662 * 0.02562 * 26 23 21 29 29 H 1.09000 * 109.46974 * 299.99189 * 1 2 3 30 30 H 1.08993 * 109.47397 * 59.99935 * 1 2 3 31 31 H 1.09002 * 109.46876 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47410 * 240.00544 * 2 1 3 33 33 H 1.09002 * 109.47616 * 119.99934 * 2 1 3 34 34 H 1.08998 * 109.47125 * 29.99431 * 4 3 2 35 35 H 1.08997 * 109.47318 * 149.99943 * 4 3 2 36 36 H 0.96998 * 120.00207 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.47201 * 59.99885 * 15 13 3 38 38 H 1.09006 * 109.47407 * 300.00220 * 15 13 3 39 39 H 1.09001 * 109.47122 * 296.04162 * 17 16 15 40 40 H 1.09008 * 109.47063 * 56.04620 * 17 16 15 41 41 H 1.08999 * 109.47271 * 176.04411 * 17 16 15 42 42 H 1.08994 * 109.47527 * 70.00041 * 18 16 15 43 43 H 1.09004 * 109.47216 * 310.00025 * 18 16 15 44 44 H 1.09001 * 109.46519 * 59.99697 * 19 18 16 45 45 H 1.09004 * 109.47059 * 300.00087 * 19 18 16 46 46 H 0.97002 * 120.00236 * 0.02562 * 20 19 18 47 47 H 1.09000 * 117.49477 * 0.02562 * 25 23 21 48 48 H 1.08999 * 117.51921 * 214.96567 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 3.6857 1.8353 -1.7037 6 1 4.3425 1.2305 -1.0962 7 6 4.1489 2.3900 -2.8779 8 7 5.3908 2.1831 -3.2579 9 14 3.0121 3.4343 -3.9298 10 1 3.1144 4.8549 -3.5090 11 1 3.4056 3.3112 -5.3564 12 1 1.6127 2.9674 -3.7601 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3110 2.2058 3.5889 17 6 3.7477 2.5096 3.6267 18 6 1.8589 1.6395 4.8668 19 6 1.9782 2.6986 5.9646 20 7 1.5268 2.1341 7.2388 21 6 1.5434 2.8903 8.3543 22 8 1.9316 4.0382 8.3032 23 6 1.0796 2.3095 9.6653 24 1 0.2624 1.5911 9.5986 25 6 2.1352 2.0808 10.7499 26 6 1.1220 3.2185 10.8952 27 9 0.1094 3.0639 11.8481 28 9 1.5879 4.5255 10.7166 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5815 1.6879 -2.0283 35 1 2.0953 3.1412 -1.1382 36 1 5.7166 2.5730 -4.0841 37 1 2.6229 0.4187 2.5298 38 1 0.9444 1.0113 2.5303 39 1 4.3076 1.5948 3.8212 40 1 4.0560 2.9275 2.6682 41 1 3.9457 3.2320 4.4185 42 1 2.4780 0.7798 5.1226 43 1 0.8192 1.3247 4.7771 44 1 1.3590 3.5584 5.7087 45 1 3.0179 3.0134 6.0542 46 1 1.2167 1.2160 7.2798 47 1 3.1648 2.3509 10.5149 48 1 2.0127 1.2121 11.3968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001390760208.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:40 Heat of formation + Delta-G solvation = -146.506360 kcal Electronic energy + Delta-G solvation = -30232.646040 eV Core-core repulsion = 25573.216738 eV Total energy + Delta-G solvation = -4659.429302 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.68900 -48.37477 -41.07221 -40.81611 -38.45259 -36.93116 -36.64014 -35.69573 -34.83962 -31.97075 -30.98287 -29.87933 -28.56299 -26.69432 -25.02021 -24.31038 -23.68553 -23.45393 -22.27108 -21.37056 -19.80588 -19.32916 -19.10103 -18.19910 -18.01309 -17.48656 -17.31632 -17.04078 -16.92311 -16.71128 -16.32769 -16.14578 -15.71857 -15.37965 -15.09704 -15.02529 -14.80649 -14.67298 -14.63103 -14.54382 -14.46655 -14.27182 -13.98391 -13.71242 -13.48397 -13.43344 -13.19518 -12.99166 -12.68500 -12.60023 -12.50541 -12.36330 -12.29835 -12.11526 -12.02155 -11.82377 -11.73728 -11.27551 -10.98891 -10.83372 -10.54004 -10.19412 -9.36954 -9.29741 -8.34346 -6.38510 1.17290 1.31352 1.35890 1.43637 1.68154 1.87373 2.03583 2.21630 2.30202 2.35593 3.00017 3.01915 3.21769 3.39579 3.54116 3.70942 3.80090 3.89029 4.06096 4.12133 4.24733 4.35975 4.44694 4.46046 4.48917 4.54595 4.57397 4.59942 4.68539 4.77678 4.82590 4.84454 4.92873 4.94821 5.04513 5.05216 5.17573 5.28620 5.42967 5.48571 5.69488 5.84389 6.06703 6.25659 6.43195 6.62638 6.79197 7.13326 7.22932 7.52349 8.82389 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.001703 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.871410 B =16439.317259 C =16967.908961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.227 3.773 5 C -0.532 4.532 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.279 1.279 11 H -0.275 1.275 12 H -0.238 1.238 13 C 0.495 3.505 14 O -0.579 6.579 15 C 0.054 3.946 16 N -0.543 5.543 17 C 0.022 3.978 18 C 0.055 3.945 19 C 0.126 3.874 20 N -0.699 5.699 21 C 0.532 3.468 22 O -0.574 6.574 23 C -0.182 4.182 24 H 0.191 0.809 25 C -0.114 4.114 26 C 0.187 3.813 27 F -0.161 7.161 28 F -0.170 7.170 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.014 0.986 36 H 0.268 0.732 37 H 0.083 0.917 38 H 0.136 0.864 39 H 0.037 0.963 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.424 0.576 47 H 0.126 0.874 48 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.115 -12.274 27.564 33.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.104 3.896 5 C -0.570 4.570 6 H 0.048 0.952 7 C -0.188 4.188 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.200 1.200 12 H -0.162 1.162 13 C 0.283 3.717 14 O -0.458 6.458 15 C -0.077 4.077 16 N -0.268 5.268 17 C -0.126 4.126 18 C -0.073 4.073 19 C 0.001 3.999 20 N -0.353 5.353 21 C 0.318 3.682 22 O -0.452 6.452 23 C -0.203 4.203 24 H 0.208 0.792 25 C -0.151 4.151 26 C 0.150 3.850 27 F -0.142 7.142 28 F -0.150 7.150 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.154 0.846 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.127 0.873 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.262 0.738 47 H 0.144 0.856 48 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.786 -10.380 27.294 32.292 hybrid contribution 0.593 0.210 -0.881 1.082 sum -13.193 -10.170 26.414 31.228 Atomic orbital electron populations 1.22162 0.93925 1.03637 1.02122 1.21782 0.95641 0.81032 1.03943 1.48078 1.64555 1.15222 1.05669 1.19236 0.94649 0.92900 0.82807 1.21563 0.97103 1.31831 1.06525 0.95217 1.25833 0.96677 0.97235 0.99046 1.70043 1.17354 1.46656 1.24464 0.85746 0.80566 0.78965 0.77850 1.20513 1.20000 1.16154 1.21277 0.77176 0.86762 0.86471 1.90629 1.46907 1.20574 1.87716 1.22017 1.04955 0.93628 0.87050 1.61357 1.17416 1.45133 1.02898 1.22461 0.87149 1.00335 1.02641 1.22256 1.03167 0.95150 0.86703 1.21153 0.99703 0.96822 0.82177 1.45544 1.65834 1.17024 1.06867 1.19824 0.77694 0.85343 0.85351 1.90831 1.48220 1.19674 1.86512 1.23731 1.06221 1.02511 0.87880 0.79194 1.24505 0.96263 0.97691 0.96684 1.20077 0.92881 0.79442 0.92626 1.93038 1.61052 1.95285 1.64824 1.93070 1.88134 1.38542 1.95277 0.91650 0.93900 0.88669 0.91271 0.88323 0.93592 0.96794 0.92352 0.89972 0.84596 0.94408 0.93278 0.90892 0.91539 0.87266 0.92631 0.92643 0.73811 0.85558 0.80824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 10.24 71.98 0.74 -2.36 16 2 C 0.10 2.60 5.93 86.38 0.51 3.11 16 3 N -0.60 -23.37 2.46 -826.15 -2.03 -25.39 16 4 C 0.23 10.98 4.23 85.64 0.36 11.34 16 5 C -0.53 -31.16 9.94 25.60 0.25 -30.91 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 7 C 0.01 0.59 5.47 84.65 0.46 1.06 16 8 N -0.94 -59.87 13.96 21.45 0.30 -59.57 16 9 Si 0.95 44.94 27.47 68.60 1.88 46.82 16 10 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 13 C 0.49 19.12 7.36 87.66 0.65 19.76 16 14 O -0.58 -28.80 13.91 -3.03 -0.04 -28.84 16 15 C 0.05 1.30 4.00 85.55 0.34 1.64 16 16 N -0.54 -13.53 4.50 -927.02 -4.17 -17.71 16 17 C 0.02 0.64 8.96 127.69 1.14 1.78 16 18 C 0.05 0.77 5.07 86.31 0.44 1.20 16 19 C 0.13 2.22 5.60 86.38 0.48 2.70 16 20 N -0.70 -7.86 5.56 -463.05 -2.57 -10.44 16 21 C 0.53 8.97 7.61 87.66 0.67 9.64 16 22 O -0.57 -16.58 15.14 -3.03 -0.05 -16.62 16 23 C -0.18 -1.54 6.17 -11.52 -0.07 -1.62 16 24 H 0.19 -0.01 8.14 -2.38 -0.02 -0.03 16 25 C -0.11 -0.61 10.21 30.63 0.31 -0.30 16 26 C 0.19 2.77 5.19 30.61 0.16 2.92 16 27 F -0.16 -2.46 17.60 44.97 0.79 -1.67 16 28 F -0.17 -4.18 15.71 44.97 0.71 -3.47 16 29 H 0.06 1.10 7.22 -2.39 -0.02 1.09 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 33 H 0.10 1.94 6.44 -2.39 -0.02 1.92 16 34 H 0.05 2.06 7.13 -2.39 -0.02 2.04 16 35 H 0.01 0.74 6.85 -2.39 -0.02 0.72 16 36 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 37 H 0.08 1.66 7.38 -2.39 -0.02 1.65 16 38 H 0.14 2.25 6.98 -2.38 -0.02 2.24 16 39 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 1.92 5.83 -2.38 -0.01 1.91 16 41 H 0.07 1.97 6.47 -2.39 -0.02 1.95 16 42 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 43 H 0.11 0.97 7.93 -2.39 -0.02 0.95 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.20 6.55 -2.39 -0.02 1.18 16 46 H 0.42 0.99 8.47 -92.71 -0.79 0.20 16 47 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.17 -0.42 8.14 -2.39 -0.02 -0.43 16 Total: -1.00 -92.26 399.86 1.42 -90.84 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 0.15 Total: 6.06 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 6.45 Total: 19.99 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -8.47 Total: -113.11 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.09 Total: -45.46 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 1.50 Total: -5.14 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -92.26 1.42 -90.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390760208.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.665 kcal (2) G-P(sol) polarization free energy of solvation -92.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds