Wall clock time and date at job start Wed Apr 1 2020 04:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46498 * 109.47103 * 2 1 4 4 C 1.46497 * 120.00548 * 270.00111 * 3 2 1 5 5 C 1.50703 * 109.47345 * 270.00324 * 4 3 2 6 6 H 1.07999 * 119.99738 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00265 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99843 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00057 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46690 * 90.00131 * 9 7 5 11 11 H 1.48500 * 109.47205 * 210.00122 * 9 7 5 12 12 H 1.48496 * 109.47094 * 330.00384 * 9 7 5 13 13 C 1.34781 * 120.00102 * 89.99793 * 3 2 1 14 14 O 1.21276 * 120.00176 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99687 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47113 * 179.97438 * 15 13 3 17 17 C 1.46899 * 111.00065 * 66.04389 * 16 15 13 18 18 C 1.46902 * 111.00087 * 190.00034 * 16 15 13 19 19 C 1.52997 * 109.47052 * 169.99876 * 18 16 15 20 20 N 1.46497 * 109.46995 * 180.02562 * 19 18 16 21 21 C 1.34776 * 120.00175 * 180.02562 * 20 19 18 22 22 O 1.21281 * 119.99608 * 359.97438 * 21 20 19 23 23 C 1.50699 * 120.00426 * 180.02562 * 21 20 19 24 24 H 1.09002 * 115.55636 * 325.68296 * 23 21 20 25 25 C 1.53000 * 117.50321 * 179.97438 * 23 21 20 26 26 C 1.52997 * 117.50247 * 111.36997 * 23 21 20 27 27 F 1.39902 * 117.49965 * 0.02562 * 26 23 21 28 28 F 1.39899 * 117.50367 * 214.98005 * 26 23 21 29 29 H 1.08994 * 109.47454 * 59.99973 * 1 2 3 30 30 H 1.09007 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47555 * 299.99557 * 1 2 3 32 32 H 1.09000 * 109.47555 * 240.00443 * 2 1 3 33 33 H 1.09002 * 109.47707 * 119.99769 * 2 1 3 34 34 H 1.09010 * 109.47033 * 29.99443 * 4 3 2 35 35 H 1.08996 * 109.47968 * 149.99613 * 4 3 2 36 36 H 0.96999 * 119.99801 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47262 * 60.00162 * 15 13 3 38 38 H 1.09003 * 109.47047 * 299.99695 * 15 13 3 39 39 H 1.08998 * 109.46880 * 183.95787 * 17 16 15 40 40 H 1.09008 * 109.47296 * 303.95563 * 17 16 15 41 41 H 1.08998 * 109.46835 * 63.95222 * 17 16 15 42 42 H 1.09002 * 109.46601 * 49.99618 * 18 16 15 43 43 H 1.08996 * 109.46958 * 290.00113 * 18 16 15 44 44 H 1.08997 * 109.47037 * 59.99685 * 19 18 16 45 45 H 1.09000 * 109.47064 * 299.99624 * 19 18 16 46 46 H 0.97006 * 120.00064 * 359.97438 * 20 19 18 47 47 H 1.08990 * 117.49990 * 145.01584 * 25 23 21 48 48 H 1.09004 * 117.49237 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1490 2.3898 -2.8779 8 7 3.3487 3.1252 -3.6184 9 14 5.9135 2.0968 -3.4168 10 1 5.9773 0.8756 -4.2592 11 1 6.3921 3.2641 -4.2002 12 1 6.7735 1.9179 -2.2196 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 1.3843 3.3451 3.6278 18 6 2.3077 1.4809 4.8666 19 6 2.8814 2.3793 5.9641 20 7 2.8788 1.6562 7.2382 21 6 3.3421 2.2544 8.3535 22 8 3.7615 3.3912 8.3023 23 6 3.3400 1.5103 9.6640 24 1 2.5077 0.8224 9.8129 25 6 3.8794 2.2437 10.8937 26 6 4.6952 1.1180 10.2559 27 9 5.8417 1.4780 9.5394 28 9 4.7714 -0.0961 10.9468 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5816 1.6878 -2.0284 35 1 2.0954 3.1411 -1.1384 36 1 3.6748 3.5157 -4.4443 37 1 2.6227 0.4187 2.5299 38 1 0.9443 1.0114 2.5302 39 1 1.6852 4.0311 4.4196 40 1 1.4063 3.8642 2.6695 41 1 0.3741 2.9854 3.8230 42 1 2.9184 0.5826 4.7761 43 1 1.2859 1.2012 5.1232 44 1 2.2707 3.2776 6.0545 45 1 3.9032 2.6589 5.7076 46 1 2.5430 0.7470 7.2792 47 1 3.4017 2.0386 11.8517 48 1 4.2361 3.2643 10.7547 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001390760209.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:57 Heat of formation + Delta-G solvation = -122.426533 kcal Electronic energy + Delta-G solvation = -30282.045547 eV Core-core repulsion = 25623.660424 eV Total energy + Delta-G solvation = -4658.385123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -49.20314 -47.87071 -40.30060 -39.38872 -37.39200 -36.11949 -35.30687 -34.77687 -32.79145 -30.24607 -29.96832 -28.38926 -26.76679 -25.75969 -23.99506 -23.09079 -23.03510 -22.34716 -21.38238 -20.65074 -18.78653 -18.34787 -17.77285 -16.96779 -16.60047 -16.51345 -16.34063 -16.28155 -15.96038 -15.43069 -15.24286 -14.61863 -14.50875 -14.44839 -14.27713 -14.25150 -14.05661 -13.92298 -13.58642 -13.44708 -13.27390 -12.85792 -12.77031 -12.45683 -12.16429 -12.01174 -11.82099 -11.72117 -11.66218 -11.33617 -11.26048 -11.16516 -10.89889 -10.82407 -10.73504 -10.51541 -10.36435 -10.10715 -9.60604 -9.45723 -8.91730 -8.41866 -8.27186 -7.64019 -6.02756 -4.07117 1.64846 2.37585 2.54441 2.85945 3.31521 3.38173 3.40253 3.46295 3.56970 3.60816 3.87825 4.01348 4.19133 4.30428 4.47334 4.59898 4.78669 4.85601 4.96378 5.01240 5.15228 5.21495 5.22579 5.31036 5.32041 5.43908 5.55403 5.59831 5.62233 5.64266 5.73867 5.77688 5.96906 5.98444 6.19550 6.28946 6.43260 6.82900 6.98356 7.01230 7.12281 7.45560 7.56751 7.71167 7.94102 8.25271 8.43551 8.92743 9.13310 9.58089 11.05263 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.001865 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.812121 B =15007.568890 C =15791.454465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.522 6.522 15 C 0.038 3.962 16 N -0.519 5.519 17 C 0.016 3.984 18 C 0.046 3.954 19 C 0.120 3.880 20 N -0.720 5.720 21 C 0.542 3.458 22 O -0.520 6.520 23 C -0.195 4.195 24 H 0.150 0.850 25 C -0.140 4.140 26 C 0.223 3.777 27 F -0.149 7.149 28 F -0.154 7.154 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.018 0.982 42 H 0.081 0.919 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.402 0.598 47 H 0.133 0.867 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 -9.285 27.330 29.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.398 6.398 15 C -0.093 4.093 16 N -0.243 5.243 17 C -0.132 4.132 18 C -0.083 4.083 19 C -0.003 4.003 20 N -0.371 5.371 21 C 0.326 3.674 22 O -0.395 6.395 23 C -0.217 4.217 24 H 0.168 0.832 25 C -0.178 4.178 26 C 0.185 3.815 27 F -0.129 7.129 28 F -0.135 7.135 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.037 0.963 42 H 0.099 0.901 43 H 0.057 0.943 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.236 0.764 47 H 0.151 0.849 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.030 -7.552 26.978 28.657 hybrid contribution 0.055 -1.345 -0.347 1.390 sum -5.975 -8.896 26.631 28.706 Atomic orbital electron populations 1.22222 0.96920 1.01335 1.02229 1.21397 0.93372 0.84394 1.02610 1.48265 1.64055 1.13206 1.07700 1.19249 0.96237 0.93598 0.78039 1.21433 0.96931 1.31809 1.06130 0.92479 1.24938 0.97845 0.94946 0.96450 1.69933 1.35676 1.33525 1.14325 0.86500 0.84752 0.77617 0.78588 1.20712 1.21109 1.19853 1.20070 0.78928 0.87167 0.84668 1.90647 1.44586 1.17836 1.86706 1.22092 1.00375 0.96026 0.90767 1.61448 1.52839 1.09091 1.00903 1.22654 0.91906 0.93500 1.05122 1.22238 0.99606 0.96886 0.89563 1.21410 1.03345 0.94928 0.80650 1.45784 1.64607 1.18297 1.08432 1.19117 0.77986 0.86393 0.83883 1.90774 1.45441 1.17799 1.85522 1.23740 0.98385 1.04270 0.95327 0.83190 1.24310 0.97930 0.98754 0.96835 1.19640 0.81859 0.84419 0.95570 1.93110 1.50966 1.90987 1.77818 1.93069 1.96579 1.45060 1.78767 0.91981 0.92217 0.93306 0.89901 0.91951 0.95108 0.93933 0.92764 0.88471 0.92479 0.91357 0.88608 0.96322 0.90059 0.94286 0.90744 0.89813 0.76407 0.84864 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.15 0.38 -1.74 16 2 C 0.11 1.62 5.93 -4.05 -0.02 1.59 16 3 N -0.60 -12.26 2.46 -175.06 -0.43 -12.69 16 4 C 0.25 6.39 5.16 -5.19 -0.03 6.36 16 5 C -0.52 -14.83 9.39 -34.44 -0.32 -15.15 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 9 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.51 10.19 7.37 -10.98 -0.08 10.10 16 14 O -0.52 -12.86 13.91 5.56 0.08 -12.78 16 15 C 0.04 0.54 4.00 -4.97 -0.02 0.52 16 16 N -0.52 -7.18 4.50 -244.37 -1.10 -8.28 16 17 C 0.02 0.22 8.96 60.06 0.54 0.75 16 18 C 0.05 0.44 5.07 -3.82 -0.02 0.42 16 19 C 0.12 1.21 5.60 -4.05 -0.02 1.19 16 20 N -0.72 -5.59 5.56 -60.30 -0.33 -5.93 16 21 C 0.54 5.13 7.25 -10.99 -0.08 5.05 16 22 O -0.52 -7.11 16.26 5.56 0.09 -7.02 16 23 C -0.19 -1.15 6.18 -91.77 -0.57 -1.72 16 24 H 0.15 0.38 8.14 -51.93 -0.42 -0.04 16 25 C -0.14 -0.73 10.01 -26.75 -0.27 -1.00 16 26 C 0.22 1.68 5.19 -26.75 -0.14 1.54 16 27 F -0.15 -1.60 17.13 2.25 0.04 -1.56 16 28 F -0.15 -1.19 17.60 2.25 0.04 -1.15 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.58 7.22 -51.93 -0.38 0.20 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 34 H 0.03 0.80 8.07 -51.92 -0.42 0.38 16 35 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 37 H 0.10 1.21 7.19 -51.93 -0.37 0.84 16 38 H 0.06 0.68 7.17 -51.93 -0.37 0.31 16 39 H 0.07 0.86 6.47 -51.93 -0.34 0.52 16 40 H 0.10 1.65 5.82 -51.92 -0.30 1.35 16 41 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.08 0.68 7.93 -51.93 -0.41 0.27 16 43 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 44 H 0.07 0.81 6.55 -51.93 -0.34 0.47 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.40 1.80 8.47 -40.82 -0.35 1.46 16 47 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.14 0.86 7.67 -51.93 -0.40 0.46 16 LS Contribution 404.95 15.07 6.10 6.10 Total: -1.00 -36.44 404.95 -7.87 -44.30 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.32 Total: -1.68 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -0.75 Total: 9.55 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -1.13 Total: -52.80 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: 0.17 Total: -19.80 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.08 Total: -2.71 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.44 -7.87 -44.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390760209.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.123 kcal (2) G-P(sol) polarization free energy of solvation -36.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds